EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000020897 (Gene tree)
Gene ID
246216
Gene Symbol
Prpf19
Alias
LOC246216|MGC124562|Prp19
Full Name
pre-mRNA processing factor 19
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
11040 bases
Position
chr1:226947105-226958144
Accession
708496
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000028373Prp19PF08606.115.7e-3311
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000028373-2114XM_006231013ENSRNOP00000028373504 (aa)XP_006231075Q9JMJ4
Gene Model
Click here to download ENSRNOG00000020897's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
rno04120Ubiquitin mediated proteolysisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000020897's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000020897Prpf195630.798ENSRNOG00000037295Poc1a7330.798
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000020897Prpf1910099.405ENSG00000110107PRPF19100100.000Homo_sapiens
ENSRNOG00000020897Prpf1910085.941ENSAPOG00000017823prpf1910085.941Acanthochromis_polyacanthus
ENSRNOG00000020897Prpf1910099.195ENSAMEG00000007375PRPF199999.195Ailuropoda_melanoleuca
ENSRNOG00000020897Prpf199984.692ENSACIG00000015876prpf199984.692Amphilophus_citrinellus
ENSRNOG00000020897Prpf1910085.941ENSAOCG00000020444prpf1910085.941Amphiprion_ocellaris
ENSRNOG00000020897Prpf1910085.941ENSAPEG00000016076prpf1910085.941Amphiprion_percula
ENSRNOG00000020897Prpf1910085.941ENSATEG00000008840prpf1910085.941Anabas_testudineus
ENSRNOG00000020897Prpf1910097.421ENSACAG00000017797PRPF1910097.421Anolis_carolinensis
ENSRNOG00000020897Prpf1910099.008ENSANAG00000021762PRPF1910099.008Aotus_nancymaae
ENSRNOG00000020897Prpf1910084.950ENSACLG00000009416prpf1910084.950Astatotilapia_calliptera
ENSRNOG00000020897Prpf1910085.743ENSAMXG00000011547prpf1910085.743Astyanax_mexicanus
ENSRNOG00000020897Prpf1910099.603ENSBTAG00000014366PRPF1910099.603Bos_taurus
ENSRNOG00000020897Prpf1910051.581WBGene00020423prp-1910051.581Caenorhabditis_elegans
ENSRNOG00000020897Prpf1910099.206ENSCJAG00000016509PRPF1910099.206Callithrix_jacchus
ENSRNOG00000020897Prpf1910099.206ENSCAFG00000016438PRPF199899.206Canis_familiaris
ENSRNOG00000020897Prpf1910099.206ENSCAFG00020012565PRPF1910099.206Canis_lupus_dingo
ENSRNOG00000020897Prpf1910099.603ENSCHIG00000018281PRPF1910099.603Capra_hircus
ENSRNOG00000020897Prpf199998.594ENSTSYG00000006860PRPF199998.594Carlito_syrichta
ENSRNOG00000020897Prpf199999.198ENSCAPG00000016225PRPF1910099.198Cavia_aperea
ENSRNOG00000020897Prpf1910099.603ENSCPOG00000020688PRPF1910099.603Cavia_porcellus
ENSRNOG00000020897Prpf1910099.206ENSCCAG00000025839PRPF1910099.206Cebus_capucinus
ENSRNOG00000020897Prpf1910099.405ENSCATG00000041921PRPF1910099.405Cercocebus_atys
ENSRNOG00000020897Prpf199999.598ENSCLAG00000003338PRPF1910099.598Chinchilla_lanigera
ENSRNOG00000020897Prpf1910099.405ENSCSAG00000006254PRPF1910099.405Chlorocebus_sabaeus
ENSRNOG00000020897Prpf196287.460ENSCHOG00000005840PRPF1910087.460Choloepus_hoffmanni
ENSRNOG00000020897Prpf1910097.421ENSCPBG00000027061PRPF1910097.421Chrysemys_picta_bellii
ENSRNOG00000020897Prpf198768.119ENSCING00000016625-9968.119Ciona_intestinalis
ENSRNOG00000020897Prpf1910068.056ENSCSAVG00000002027-9968.056Ciona_savignyi
ENSRNOG00000020897Prpf199999.346ENSCANG00000027155PRPF199945.857Colobus_angolensis_palliatus
ENSRNOG00000020897Prpf19100100.000ENSCGRG00001002699Prpf19100100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000020897Prpf1910099.008ENSCGRG00000008964Prpf1910099.008Cricetulus_griseus_crigri
ENSRNOG00000020897Prpf1910084.950ENSCSEG00000010411prpf1910084.950Cynoglossus_semilaevis
ENSRNOG00000020897Prpf1910084.752ENSCVAG00000012011prpf1910084.752Cyprinodon_variegatus
ENSRNOG00000020897Prpf1910085.347ENSDARG00000015239prpf1910085.347Danio_rerio
ENSRNOG00000020897Prpf1910099.206ENSDNOG00000005797PRPF1910099.206Dasypus_novemcinctus
ENSRNOG00000020897Prpf1910099.603ENSDORG00000006906Prpf1910099.603Dipodomys_ordii
ENSRNOG00000020897Prpf1910065.882FBgn0261119Prp199965.882Drosophila_melanogaster
ENSRNOG00000020897Prpf1910086.905ENSETEG00000012295PRPF1910086.905Echinops_telfairi
ENSRNOG00000020897Prpf198376.667ENSEBUG00000013075prpf1910076.667Eptatretus_burgeri
ENSRNOG00000020897Prpf1910098.950ENSEASG00005008056PRPF199898.950Equus_asinus_asinus
ENSRNOG00000020897Prpf1910099.405ENSECAG00000007322PRPF1910099.405Equus_caballus
ENSRNOG00000020897Prpf1910078.571ENSELUG00000004578prpf1910078.571Esox_lucius
ENSRNOG00000020897Prpf1910084.554ENSELUG00000020276-10084.554Esox_lucius
ENSRNOG00000020897Prpf1910099.206ENSFCAG00000013668PRPF1910099.206Felis_catus
ENSRNOG00000020897Prpf1910097.024ENSFALG00000012084PRPF1910097.024Ficedula_albicollis
ENSRNOG00000020897Prpf198499.289ENSFDAG00000009420PRPF199699.289Fukomys_damarensis
ENSRNOG00000020897Prpf1910084.752ENSFHEG00000022135prpf1910084.752Fundulus_heteroclitus
ENSRNOG00000020897Prpf1910086.139ENSGMOG00000014756prpf1910086.139Gadus_morhua
ENSRNOG00000020897Prpf1910097.024ENSGALG00000036530PRPF1910097.024Gallus_gallus
ENSRNOG00000020897Prpf1910084.158ENSGAFG00000008931prpf1910084.158Gambusia_affinis
ENSRNOG00000020897Prpf1910084.950ENSGACG00000017976prpf1910084.950Gasterosteus_aculeatus
ENSRNOG00000020897Prpf1910097.619ENSGAGG00000013328PRPF1910097.619Gopherus_agassizii
ENSRNOG00000020897Prpf1910099.405ENSGGOG00000008648PRPF1910099.405Gorilla_gorilla
ENSRNOG00000020897Prpf1910084.950ENSHBUG00000008394prpf1910084.950Haplochromis_burtoni
ENSRNOG00000020897Prpf1910099.206ENSHGLG00000003934PRPF1910099.206Heterocephalus_glaber_female
ENSRNOG00000020897Prpf199980.668ENSHGLG00100010649PRPF1910080.483Heterocephalus_glaber_male
ENSRNOG00000020897Prpf1910083.762ENSHCOG00000016720prpf1910083.762Hippocampus_comes
ENSRNOG00000020897Prpf1910085.743ENSIPUG00000013084prpf1910085.743Ictalurus_punctatus
ENSRNOG00000020897Prpf1910099.206ENSSTOG00000001598PRPF1910099.206Ictidomys_tridecemlineatus
ENSRNOG00000020897Prpf1910099.405ENSJJAG00000020609Prpf1910099.405Jaculus_jaculus
ENSRNOG00000020897Prpf1910085.149ENSKMAG00000010257prpf1910085.149Kryptolebias_marmoratus
ENSRNOG00000020897Prpf1910085.347ENSLBEG00000027436prpf1910085.347Labrus_bergylta
ENSRNOG00000020897Prpf1910089.881ENSLACG00000003434PRPF1910089.881Latimeria_chalumnae
ENSRNOG00000020897Prpf199174.200ENSLOCG00000008123prpf1910074.200Lepisosteus_oculatus
ENSRNOG00000020897Prpf1910095.777ENSLAFG00000002644PRPF1910095.777Loxodonta_africana
ENSRNOG00000020897Prpf1910099.405ENSMFAG00000036743PRPF1910099.405Macaca_fascicularis
ENSRNOG00000020897Prpf1910099.405ENSMMUG00000014530PRPF1910099.405Macaca_mulatta
ENSRNOG00000020897Prpf1910099.405ENSMNEG00000044485PRPF1910099.405Macaca_nemestrina
ENSRNOG00000020897Prpf1910099.405ENSMLEG00000043312PRPF1910099.405Mandrillus_leucophaeus
ENSRNOG00000020897Prpf1910085.347ENSMAMG00000006843prpf1910085.347Mastacembelus_armatus
ENSRNOG00000020897Prpf1910084.950ENSMZEG00005013356prpf1910084.950Maylandia_zebra
ENSRNOG00000020897Prpf199890.180ENSMGAG00000003180PRPF1910090.180Meleagris_gallopavo
ENSRNOG00000020897Prpf1910099.206ENSMAUG00000012585Prpf1910099.206Mesocricetus_auratus
ENSRNOG00000020897Prpf1910099.405ENSMICG00000011236PRPF1910099.405Microcebus_murinus
ENSRNOG00000020897Prpf19100100.000ENSMOCG00000010383Prpf19100100.000Microtus_ochrogaster
ENSRNOG00000020897Prpf1910084.921ENSMMOG00000003138prpf1910084.921Mola_mola
ENSRNOG00000020897Prpf1910099.008ENSMODG00000020338PRPF1910099.008Monodelphis_domestica
ENSRNOG00000020897Prpf199976.803ENSMALG00000010981prpf199976.803Monopterus_albus
ENSRNOG00000020897Prpf19100100.000MGP_CAROLIEiJ_G0022704Prpf19100100.000Mus_caroli
ENSRNOG00000020897Prpf19100100.000ENSMUSG00000024735Prpf19100100.000Mus_musculus
ENSRNOG00000020897Prpf19100100.000MGP_PahariEiJ_G0014198Prpf19100100.000Mus_pahari
ENSRNOG00000020897Prpf19100100.000MGP_SPRETEiJ_G0023618Prpf19100100.000Mus_spretus
ENSRNOG00000020897Prpf1910099.206ENSMPUG00000014432PRPF1910099.206Mustela_putorius_furo
ENSRNOG00000020897Prpf1910094.798ENSMLUG00000017597PRPF1910094.798Myotis_lucifugus
ENSRNOG00000020897Prpf1910099.008ENSNGAG00000012671Prpf1910099.008Nannospalax_galili
ENSRNOG00000020897Prpf1910084.950ENSNBRG00000000055prpf1910084.950Neolamprologus_brichardi
ENSRNOG00000020897Prpf1910099.405ENSNLEG00000013618PRPF1910099.405Nomascus_leucogenys
ENSRNOG00000020897Prpf199995.171ENSOPRG00000008630PRPF1910095.171Ochotona_princeps
ENSRNOG00000020897Prpf1910099.008ENSODEG00000004043PRPF1910099.008Octodon_degus
ENSRNOG00000020897Prpf1910084.950ENSONIG00000004880prpf1910084.950Oreochromis_niloticus
ENSRNOG00000020897Prpf1910095.429ENSOCUG00000015689PRPF1910095.429Oryctolagus_cuniculus
ENSRNOG00000020897Prpf1910084.950ENSORLG00000004666prpf1910084.950Oryzias_latipes
ENSRNOG00000020897Prpf1910084.950ENSORLG00020013561prpf1910084.950Oryzias_latipes_hni
ENSRNOG00000020897Prpf1910084.950ENSORLG00015022196prpf1910084.950Oryzias_latipes_hsok
ENSRNOG00000020897Prpf1910084.158ENSOMEG00000004424prpf1910084.158Oryzias_melastigma
ENSRNOG00000020897Prpf1910099.206ENSOGAG00000016756PRPF1910099.206Otolemur_garnettii
ENSRNOG00000020897Prpf1910099.603ENSOARG00000015596PRPF1910099.603Ovis_aries
ENSRNOG00000020897Prpf199996.857ENSPPAG00000030246PRPF1910096.857Pan_paniscus
ENSRNOG00000020897Prpf1910099.206ENSPPRG00000002470PRPF1910099.206Panthera_pardus
ENSRNOG00000020897Prpf199999.195ENSPTIG00000006541PRPF199999.195Panthera_tigris_altaica
ENSRNOG00000020897Prpf1910099.405ENSPTRG00000003724PRPF1910099.405Pan_troglodytes
ENSRNOG00000020897Prpf1910099.405ENSPANG00000002762PRPF1910099.405Papio_anubis
ENSRNOG00000020897Prpf1910084.950ENSPKIG00000019715prpf1910084.950Paramormyrops_kingsleyae
ENSRNOG00000020897Prpf198397.136ENSPSIG00000007497PRPF1910097.136Pelodiscus_sinensis
ENSRNOG00000020897Prpf1910084.921ENSPMGG00000017527prpf1910084.921Periophthalmus_magnuspinnatus
ENSRNOG00000020897Prpf1910098.810ENSPEMG00000019270Prpf1910098.810Peromyscus_maniculatus_bairdii
ENSRNOG00000020897Prpf199998.501ENSPCIG00000003485PRPF197998.501Phascolarctos_cinereus
ENSRNOG00000020897Prpf1910084.158ENSPFOG00000002558prpf1910084.158Poecilia_formosa
ENSRNOG00000020897Prpf1910084.158ENSPLAG00000017942prpf1910084.158Poecilia_latipinna
ENSRNOG00000020897Prpf1910084.158ENSPMEG00000008638prpf1910084.158Poecilia_mexicana
ENSRNOG00000020897Prpf1910086.364ENSPREG00000002489prpf199686.364Poecilia_reticulata
ENSRNOG00000020897Prpf1910097.732ENSPPYG00000003202PRPF199297.732Pongo_abelii
ENSRNOG00000020897Prpf1910098.810ENSPCAG00000001930PRPF1910098.810Procavia_capensis
ENSRNOG00000020897Prpf1910099.364ENSPCOG00000014017PRPF1910099.364Propithecus_coquereli
ENSRNOG00000020897Prpf1910099.405ENSPVAG00000014669PRPF1910099.405Pteropus_vampyrus
ENSRNOG00000020897Prpf1910084.950ENSPNYG00000000859prpf1910084.950Pundamilia_nyererei
ENSRNOG00000020897Prpf1910086.139ENSPNAG00000019245prpf1910086.139Pygocentrus_nattereri
ENSRNOG00000020897Prpf1910099.405ENSRBIG00000036672PRPF1910099.405Rhinopithecus_bieti
ENSRNOG00000020897Prpf1910099.405ENSRROG00000041572PRPF1910099.405Rhinopithecus_roxellana
ENSRNOG00000020897Prpf1910099.206ENSSBOG00000022840PRPF1910099.206Saimiri_boliviensis_boliviensis
ENSRNOG00000020897Prpf1910099.008ENSSHAG00000009462PRPF1910099.008Sarcophilus_harrisii
ENSRNOG00000020897Prpf1910083.135ENSSFOG00015001236prpf1910083.135Scleropages_formosus
ENSRNOG00000020897Prpf1910085.743ENSSMAG00000002273prpf1910085.743Scophthalmus_maximus
ENSRNOG00000020897Prpf1910085.545ENSSDUG00000003299prpf1910085.545Seriola_dumerili
ENSRNOG00000020897Prpf1910085.545ENSSLDG00000003019prpf1910085.545Seriola_lalandi_dorsalis
ENSRNOG00000020897Prpf1910096.825ENSSPUG00000019328PRPF1910096.825Sphenodon_punctatus
ENSRNOG00000020897Prpf1910085.743ENSSPAG00000008546prpf1910085.743Stegastes_partitus
ENSRNOG00000020897Prpf1910099.405ENSSSCG00000013107PRPF1910099.405Sus_scrofa
ENSRNOG00000020897Prpf1910097.024ENSTGUG00000006319PRPF1910097.024Taeniopygia_guttata
ENSRNOG00000020897Prpf1910084.356ENSTRUG00000008502prpf1910084.356Takifugu_rubripes
ENSRNOG00000020897Prpf1910067.921ENSTNIG00000014219prpf1910067.921Tetraodon_nigroviridis
ENSRNOG00000020897Prpf1910099.206ENSTTRG00000012476PRPF1910099.206Tursiops_truncatus
ENSRNOG00000020897Prpf1910099.206ENSUAMG00000011280PRPF1910099.206Ursus_americanus
ENSRNOG00000020897Prpf198498.815ENSUMAG00000011609PRPF198398.815Ursus_maritimus
ENSRNOG00000020897Prpf199998.899ENSVPAG00000010516PRPF1910098.899Vicugna_pacos
ENSRNOG00000020897Prpf1910099.206ENSVVUG00000005291PRPF1910099.206Vulpes_vulpes
ENSRNOG00000020897Prpf1910085.194ENSXETG00000011938prpf1910085.194Xenopus_tropicalis
ENSRNOG00000020897Prpf1910084.158ENSXCOG00000003141prpf1910084.158Xiphophorus_couchianus
ENSRNOG00000020897Prpf1910084.356ENSXMAG00000008485prpf1910084.356Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000209protein polyubiquitination-ISOProcess
GO:0000244spliceosomal tri-snRNP complex assembly-ISOProcess
GO:0000244spliceosomal tri-snRNP complex assembly-ISSProcess
GO:0000245spliceosomal complex assembly-IEAProcess
GO:0000245spliceosomal complex assembly-ISOProcess
GO:0000349generation of catalytic spliceosome for first transesterification step21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISSProcess
GO:0000974Prp19 complex21873635.IBAComponent
GO:0000974Prp19 complex-ISOComponent
GO:0000974Prp19 complex-ISSComponent
GO:0001833inner cell mass cell proliferation-IEAProcess
GO:0001833inner cell mass cell proliferation-ISOProcess
GO:0003674molecular_function-NDFunction
GO:0004842ubiquitin-protein transferase activity21873635.IBAFunction
GO:0005515protein binding16352598.IPIFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus16352598.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005634nucleus-ISSComponent
GO:0005662DNA replication factor A complex-ISOComponent
GO:0005662DNA replication factor A complex-ISSComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0005737cytoplasm-ISSComponent
GO:0005811lipid droplet-IEAComponent
GO:0005811lipid droplet-ISOComponent
GO:0005819spindle-IEAComponent
GO:0006303double-strand break repair via nonhomologous end joining-ISOProcess
GO:0006303double-strand break repair via nonhomologous end joining-ISSProcess
GO:0008610lipid biosynthetic process-IEAProcess
GO:0008610lipid biosynthetic process-ISOProcess
GO:0010498proteasomal protein catabolic process-ISOProcess
GO:0010498proteasomal protein catabolic process-ISSProcess
GO:0016607nuclear speck-ISOComponent
GO:0016607nuclear speck-ISSComponent
GO:0034450ubiquitin-ubiquitin ligase activity-IEAFunction
GO:0034450ubiquitin-ubiquitin ligase activity-ISOFunction
GO:0034613cellular protein localization-ISOProcess
GO:0034613cellular protein localization-ISSProcess
GO:0035861site of double-strand break-ISOComponent
GO:0035861site of double-strand break-ISSComponent
GO:0042802identical protein binding-IEAFunction
GO:0042802identical protein binding-ISOFunction
GO:0045665negative regulation of neuron differentiation-ISOProcess
GO:0045666positive regulation of neuron differentiation16352598.IDAProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-IEAProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0048711positive regulation of astrocyte differentiation23769735.IMPProcess
GO:0048711positive regulation of astrocyte differentiation-ISOProcess
GO:0061630ubiquitin protein ligase activity-ISOFunction
GO:0061630ubiquitin protein ligase activity-ISSFunction
GO:0070534protein K63-linked ubiquitination-ISOProcess
GO:0070534protein K63-linked ubiquitination-ISSProcess
GO:0071006U2-type catalytic step 1 spliceosome21873635.IBAComponent
GO:0071007U2-type catalytic step 2 spliceosome-IEAComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0072422signal transduction involved in DNA damage checkpoint-ISOProcess
GO:0072422signal transduction involved in DNA damage checkpoint-ISSProcess

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