EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000021085 (Gene tree)
Gene ID: 117855
Gene Symbol: Sf1
Alias: Zfp162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 13570 bases
Position: chr1:221735517-221749086
Accession: 620645
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000041676	KH_1	PF00013.29	1.8e-07	1	1
ENSRNOP00000028628	KH_1	PF00013.29	2.6e-07	1	1
ENSRNOP00000041676	zf-CCHC	PF00098.23	0.00013	1	1
ENSRNOP00000028628	zf-CCHC	PF00098.23	0.00019	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000044866	-	2649	XM_006230646	ENSRNOP00000041676	502 (aa)	XP_006230708	F1LM37
ENSRNOT00000028628	-	3374	XM_006230641	ENSRNOP00000028628	639 (aa)	XP_006230703	F1LSC3

Gene Model

Click here to download ENSRNOG00000021085's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000021085's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000021085	Sf1	60	81.290	ENSAPOG00000012341	sf1	60	75.814	Acanthochromis_polyacanthus
ENSRNOG00000021085	Sf1	91	97.380	ENSAMEG00000017828	SF1	83	99.254	Ailuropoda_melanoleuca
ENSRNOG00000021085	Sf1	58	83.245	ENSACIG00000016514	sf1	62	78.282	Amphilophus_citrinellus
ENSRNOG00000021085	Sf1	60	80.645	ENSAOCG00000010934	sf1	61	76.047	Amphiprion_ocellaris
ENSRNOG00000021085	Sf1	60	80.645	ENSAPEG00000009498	sf1	61	76.047	Amphiprion_percula
ENSRNOG00000021085	Sf1	58	82.105	ENSATEG00000001894	sf1	60	77.488	Anabas_testudineus
ENSRNOG00000021085	Sf1	96	86.601	ENSANAG00000022607	-	99	86.899	Aotus_nancymaae
ENSRNOG00000021085	Sf1	100	99.218	ENSANAG00000026664	-	100	99.218	Aotus_nancymaae
ENSRNOG00000021085	Sf1	60	84.590	ENSACLG00000007633	sf1	61	78.177	Astatotilapia_calliptera
ENSRNOG00000021085	Sf1	61	85.484	ENSAMXG00000003630	sf1	50	79.462	Astyanax_mexicanus
ENSRNOG00000021085	Sf1	100	99.374	ENSBTAG00000001035	SF1	100	99.374	Bos_taurus
ENSRNOG00000021085	Sf1	100	99.374	ENSCJAG00000002780	SF1	100	99.374	Callithrix_jacchus
ENSRNOG00000021085	Sf1	94	98.998	ENSCAFG00000014239	SF1	94	98.998	Canis_familiaris
ENSRNOG00000021085	Sf1	100	99.374	ENSCAFG00020014381	SF1	100	99.374	Canis_lupus_dingo
ENSRNOG00000021085	Sf1	100	99.374	ENSCHIG00000025867	SF1	100	99.374	Capra_hircus
ENSRNOG00000021085	Sf1	50	96.154	ENSTSYG00000033618	SF1	88	100.000	Carlito_syrichta
ENSRNOG00000021085	Sf1	74	97.587	ENSCAPG00000010762	SF1	79	97.955	Cavia_aperea
ENSRNOG00000021085	Sf1	94	98.936	ENSCPOG00000012290	SF1	96	98.649	Cavia_porcellus
ENSRNOG00000021085	Sf1	94	99.362	ENSCCAG00000037881	SF1	96	99.263	Cebus_capucinus
ENSRNOG00000021085	Sf1	100	79.812	ENSCCAG00000023781	-	90	87.229	Cebus_capucinus
ENSRNOG00000021085	Sf1	100	99.374	ENSCATG00000011564	SF1	100	99.374	Cercocebus_atys
ENSRNOG00000021085	Sf1	97	96.914	ENSCSAG00000007258	SF1	97	99.055	Chlorocebus_sabaeus
ENSRNOG00000021085	Sf1	73	99.185	ENSCHOG00000006008	SF1	79	93.062	Choloepus_hoffmanni
ENSRNOG00000021085	Sf1	89	84.633	ENSCPBG00000023763	SF1	66	84.942	Chrysemys_picta_bellii
ENSRNOG00000021085	Sf1	89	51.754	ENSCSAVG00000009055	-	56	66.667	Ciona_savignyi
ENSRNOG00000021085	Sf1	100	99.374	ENSCANG00000042201	SF1	100	99.374	Colobus_angolensis_palliatus
ENSRNOG00000021085	Sf1	100	99.844	ENSCGRG00001003677	Sf1	100	99.844	Cricetulus_griseus_chok1gshd
ENSRNOG00000021085	Sf1	94	99.787	ENSCGRG00000001708	Sf1	97	98.476	Cricetulus_griseus_crigri
ENSRNOG00000021085	Sf1	62	78.571	ENSCSEG00000014375	sf1	57	76.077	Cynoglossus_semilaevis
ENSRNOG00000021085	Sf1	60	85.382	ENSCVAG00000001670	sf1	63	78.729	Cyprinodon_variegatus
ENSRNOG00000021085	Sf1	79	81.638	ENSDARG00000008188	sf1	72	78.788	Danio_rerio
ENSRNOG00000021085	Sf1	97	96.502	ENSDNOG00000001282	SF1	97	98.488	Dasypus_novemcinctus
ENSRNOG00000021085	Sf1	100	99.374	ENSDORG00000016334	Sf1	100	99.374	Dipodomys_ordii
ENSRNOG00000021085	Sf1	92	91.795	ENSETEG00000012830	SF1	82	90.769	Echinops_telfairi
ENSRNOG00000021085	Sf1	97	96.502	ENSEASG00005018272	SF1	97	98.677	Equus_asinus_asinus
ENSRNOG00000021085	Sf1	97	96.708	ENSECAG00000024544	SF1	97	98.866	Equus_caballus
ENSRNOG00000021085	Sf1	77	95.325	ENSEEUG00000001058	SF1	100	98.473	Erinaceus_europaeus
ENSRNOG00000021085	Sf1	60	81.494	ENSELUG00000013225	sf1	54	79.426	Esox_lucius
ENSRNOG00000021085	Sf1	94	99.362	ENSFCAG00000012231	SF1	94	98.998	Felis_catus
ENSRNOG00000021085	Sf1	89	95.991	ENSFDAG00000009833	SF1	89	94.957	Fukomys_damarensis
ENSRNOG00000021085	Sf1	60	81.029	ENSFHEG00000022656	sf1	61	76.102	Fundulus_heteroclitus
ENSRNOG00000021085	Sf1	60	85.016	ENSGAFG00000019284	sf1	78	80.476	Gambusia_affinis
ENSRNOG00000021085	Sf1	61	80.063	ENSGACG00000000826	sf1	68	77.014	Gasterosteus_aculeatus
ENSRNOG00000021085	Sf1	77	87.339	ENSGAGG00000021691	SF1	72	84.942	Gopherus_agassizii
ENSRNOG00000021085	Sf1	58	83.421	ENSHBUG00000011598	sf1	61	75.973	Haplochromis_burtoni
ENSRNOG00000021085	Sf1	94	98.998	ENSHGLG00000009541	SF1	94	98.998	Heterocephalus_glaber_female
ENSRNOG00000021085	Sf1	81	85.784	ENSHGLG00100008076	-	87	86.806	Heterocephalus_glaber_male
ENSRNOG00000021085	Sf1	79	86.957	ENSHGLG00100008255	-	94	85.924	Heterocephalus_glaber_male
ENSRNOG00000021085	Sf1	80	96.259	ENSHGLG00100013879	-	79	98.409	Heterocephalus_glaber_male
ENSRNOG00000021085	Sf1	61	81.073	ENSHCOG00000011388	sf1	58	76.998	Hippocampus_comes
ENSRNOG00000021085	Sf1	88	94.357	ENSSTOG00000024353	-	71	94.357	Ictidomys_tridecemlineatus
ENSRNOG00000021085	Sf1	98	99.363	ENSSTOG00000009790	-	100	99.363	Ictidomys_tridecemlineatus
ENSRNOG00000021085	Sf1	100	99.531	ENSJJAG00000011788	Sf1	100	99.531	Jaculus_jaculus
ENSRNOG00000021085	Sf1	60	82.398	ENSKMAG00000005854	sf1	63	77.518	Kryptolebias_marmoratus
ENSRNOG00000021085	Sf1	75	82.984	ENSLBEG00000019836	sf1	52	86.053	Labrus_bergylta
ENSRNOG00000021085	Sf1	69	83.429	ENSLACG00000018493	SF1	87	69.742	Latimeria_chalumnae
ENSRNOG00000021085	Sf1	61	84.466	ENSLOCG00000002130	sf1	59	80.049	Lepisosteus_oculatus
ENSRNOG00000021085	Sf1	90	98.962	ENSLAFG00000007201	SF1	90	98.962	Loxodonta_africana
ENSRNOG00000021085	Sf1	100	99.374	ENSMFAG00000033122	SF1	100	99.374	Macaca_fascicularis
ENSRNOG00000021085	Sf1	99	99.365	ENSMMUG00000022606	SF1	100	99.365	Macaca_mulatta
ENSRNOG00000021085	Sf1	100	99.374	ENSMNEG00000037901	SF1	100	99.374	Macaca_nemestrina
ENSRNOG00000021085	Sf1	98	99.364	ENSMLEG00000040706	SF1	100	97.024	Mandrillus_leucophaeus
ENSRNOG00000021085	Sf1	59	81.347	ENSMAMG00000001780	sf1	58	78.208	Mastacembelus_armatus
ENSRNOG00000021085	Sf1	58	83.158	ENSMZEG00005009196	sf1	61	75.744	Maylandia_zebra
ENSRNOG00000021085	Sf1	94	99.499	ENSMAUG00000014064	Sf1	94	99.499	Mesocricetus_auratus
ENSRNOG00000021085	Sf1	100	99.218	ENSMICG00000001202	SF1	100	99.218	Microcebus_murinus
ENSRNOG00000021085	Sf1	94	99.332	ENSMOCG00000022038	Sf1	94	99.332	Microtus_ochrogaster
ENSRNOG00000021085	Sf1	60	81.788	ENSMMOG00000020474	sf1	60	77.053	Mola_mola
ENSRNOG00000021085	Sf1	78	90.609	ENSMODG00000029407	SF1	97	94.183	Monodelphis_domestica
ENSRNOG00000021085	Sf1	60	84.333	ENSMALG00000020521	sf1	58	74.373	Monopterus_albus
ENSRNOG00000021085	Sf1	100	100.000	MGP_CAROLIEiJ_G0022607	Sf1	100	100.000	Mus_caroli
ENSRNOG00000021085	Sf1	100	100.000	ENSMUSG00000024949	Sf1	100	100.000	Mus_musculus
ENSRNOG00000021085	Sf1	100	100.000	MGP_PahariEiJ_G0014101	Sf1	100	100.000	Mus_pahari
ENSRNOG00000021085	Sf1	100	100.000	MGP_SPRETEiJ_G0023518	Sf1	100	100.000	Mus_spretus
ENSRNOG00000021085	Sf1	100	98.122	ENSMPUG00000012684	SF1	100	98.122	Mustela_putorius_furo
ENSRNOG00000021085	Sf1	99	99.049	ENSMLUG00000015217	-	99	99.049	Myotis_lucifugus
ENSRNOG00000021085	Sf1	79	90.380	ENSMLUG00000029800	-	78	94.273	Myotis_lucifugus
ENSRNOG00000021085	Sf1	94	99.165	ENSNGAG00000005550	Sf1	94	99.165	Nannospalax_galili
ENSRNOG00000021085	Sf1	60	84.590	ENSNBRG00000017606	sf1	60	79.805	Neolamprologus_brichardi
ENSRNOG00000021085	Sf1	100	99.218	ENSNLEG00000005236	-	100	99.218	Nomascus_leucogenys
ENSRNOG00000021085	Sf1	94	98.298	ENSMEUG00000013424	SF1	97	98.051	Notamacropus_eugenii
ENSRNOG00000021085	Sf1	97	96.304	ENSOPRG00000005008	SF1	96	98.526	Ochotona_princeps
ENSRNOG00000021085	Sf1	92	93.174	ENSODEG00000006102	-	90	93.174	Octodon_degus
ENSRNOG00000021085	Sf1	58	82.895	ENSONIG00000015728	sf1	61	75.515	Oreochromis_niloticus
ENSRNOG00000021085	Sf1	81	85.995	ENSOANG00000002909	SF1	96	87.212	Ornithorhynchus_anatinus
ENSRNOG00000021085	Sf1	92	98.816	ENSOCUG00000026486	SF1	94	98.816	Oryctolagus_cuniculus
ENSRNOG00000021085	Sf1	63	80.186	ENSORLG00000011853	sf1	58	77.458	Oryzias_latipes
ENSRNOG00000021085	Sf1	63	80.186	ENSORLG00020011834	sf1	60	76.291	Oryzias_latipes_hni
ENSRNOG00000021085	Sf1	61	79.936	ENSORLG00015012855	sf1	59	76.978	Oryzias_latipes_hsok
ENSRNOG00000021085	Sf1	60	80.051	ENSOMEG00000005210	sf1	61	75.587	Oryzias_melastigma
ENSRNOG00000021085	Sf1	94	98.831	ENSOGAG00000016196	SF1	94	98.831	Otolemur_garnettii
ENSRNOG00000021085	Sf1	89	93.895	ENSOARG00000009166	SF1	82	99.358	Ovis_aries
ENSRNOG00000021085	Sf1	96	99.347	ENSPPAG00000002799	-	100	99.347	Pan_paniscus
ENSRNOG00000021085	Sf1	96	99.347	ENSPPRG00000013566	SF1	100	99.347	Panthera_pardus
ENSRNOG00000021085	Sf1	74	98.123	ENSPTIG00000016141	SF1	80	98.202	Panthera_tigris_altaica
ENSRNOG00000021085	Sf1	99	94.790	ENSPTRG00000003846	SF1	99	99.296	Pan_troglodytes
ENSRNOG00000021085	Sf1	98	96.994	ENSPANG00000020754	SF1	100	96.994	Papio_anubis
ENSRNOG00000021085	Sf1	67	78.529	ENSPKIG00000012116	sf1	86	75.668	Paramormyrops_kingsleyae
ENSRNOG00000021085	Sf1	70	87.179	ENSPSIG00000003610	SF1	97	76.078	Pelodiscus_sinensis
ENSRNOG00000021085	Sf1	94	99.499	ENSPEMG00000010463	Sf1	94	99.499	Peromyscus_maniculatus_bairdii
ENSRNOG00000021085	Sf1	100	98.592	ENSPCIG00000018173	SF1	100	98.592	Phascolarctos_cinereus
ENSRNOG00000021085	Sf1	60	86.047	ENSPFOG00000013683	sf1	68	81.384	Poecilia_formosa
ENSRNOG00000021085	Sf1	60	84.194	ENSPLAG00000018076	sf1	61	79.426	Poecilia_latipinna
ENSRNOG00000021085	Sf1	60	84.194	ENSPMEG00000005726	sf1	62	79.665	Poecilia_mexicana
ENSRNOG00000021085	Sf1	60	83.548	ENSPREG00000004155	sf1	59	78.947	Poecilia_reticulata
ENSRNOG00000021085	Sf1	94	98.998	ENSPPYG00000003098	-	99	99.242	Pongo_abelii
ENSRNOG00000021085	Sf1	94	98.723	ENSPCAG00000013631	SF1	78	97.338	Procavia_capensis
ENSRNOG00000021085	Sf1	100	99.218	ENSPCOG00000027546	SF1	100	99.218	Propithecus_coquereli
ENSRNOG00000021085	Sf1	94	98.936	ENSPVAG00000016938	SF1	79	97.338	Pteropus_vampyrus
ENSRNOG00000021085	Sf1	58	83.158	ENSPNYG00000004673	sf1	59	78.436	Pundamilia_nyererei
ENSRNOG00000021085	Sf1	61	85.806	ENSPNAG00000013072	sf1	59	78.846	Pygocentrus_nattereri
ENSRNOG00000021085	Sf1	100	95.305	ENSRBIG00000042818	SF1	100	95.305	Rhinopithecus_bieti
ENSRNOG00000021085	Sf1	97	96.914	ENSRROG00000045655	SF1	100	95.344	Rhinopithecus_roxellana
ENSRNOG00000021085	Sf1	97	79.775	ENSSBOG00000022267	-	99	81.010	Saimiri_boliviensis_boliviensis
ENSRNOG00000021085	Sf1	69	89.112	ENSSHAG00000006841	SF1	75	92.927	Sarcophilus_harrisii
ENSRNOG00000021085	Sf1	65	79.580	ENSSFOG00015021978	sf1	55	77.295	Scleropages_formosus
ENSRNOG00000021085	Sf1	68	75.630	ENSSMAG00000007549	sf1	63	76.526	Scophthalmus_maximus
ENSRNOG00000021085	Sf1	89	97.333	ENSSARG00000008180	SF1	100	95.164	Sorex_araneus
ENSRNOG00000021085	Sf1	79	82.567	ENSSPUG00000012907	SF1	86	81.034	Sphenodon_punctatus
ENSRNOG00000021085	Sf1	60	80.645	ENSSPAG00000019060	sf1	61	74.828	Stegastes_partitus
ENSRNOG00000021085	Sf1	100	99.218	ENSSSCG00000013021	SF1	100	99.237	Sus_scrofa
ENSRNOG00000021085	Sf1	88	59.556	ENSTNIG00000004820	sf1	80	70.023	Tetraodon_nigroviridis
ENSRNOG00000021085	Sf1	96	84.477	ENSTBEG00000013133	SF1	79	98.876	Tupaia_belangeri
ENSRNOG00000021085	Sf1	92	95.680	ENSTTRG00000008857	SF1	96	95.543	Tursiops_truncatus
ENSRNOG00000021085	Sf1	82	96.756	ENSUAMG00000011977	SF1	100	96.756	Ursus_americanus
ENSRNOG00000021085	Sf1	82	96.957	ENSUMAG00000007268	SF1	89	100.000	Ursus_maritimus
ENSRNOG00000021085	Sf1	60	98.113	ENSVPAG00000011912	SF1	66	99.598	Vicugna_pacos
ENSRNOG00000021085	Sf1	97	96.914	ENSVVUG00000028585	SF1	97	99.055	Vulpes_vulpes
ENSRNOG00000021085	Sf1	97	69.388	ENSXETG00000008434	sf1	68	81.311	Xenopus_tropicalis
ENSRNOG00000021085	Sf1	60	85.430	ENSXCOG00000003704	sf1	75	81.188	Xiphophorus_couchianus
ENSRNOG00000021085	Sf1	60	83.601	ENSXMAG00000007822	sf1	61	79.665	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016604	nuclear body	-	IEA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0030238	male sex determination	-	IEA	Process
GO:0030238	male sex determination	-	ISO	Process
GO:0030575	nuclear body organization	-	IEA	Process
GO:0030575	nuclear body organization	-	ISO	Process
GO:0033327	Leydig cell differentiation	-	IEA	Process
GO:0033327	Leydig cell differentiation	-	ISO	Process
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0045131	pre-mRNA branch point binding	-	IEA	Function
GO:0048662	negative regulation of smooth muscle cell proliferation	11748220.	IMP	Process
GO:0050810	regulation of steroid biosynthetic process	-	IEA	Process
GO:0050810	regulation of steroid biosynthetic process	-	ISO	Process