EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000021143 (Gene tree)
Gene ID: 689883
Gene Symbol: Setdb1
Alias: LOC310668|LOC689883
Full Name: SET domain%2C bifurcated 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 31261 bases
Position: chr2:196495867-196527127
Accession: 1308370
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000028709	MBD	PF01429.19	3.4e-12	1	1
ENSRNOP00000073356	MBD	PF01429.19	3.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000077325	-	4399	XM_006232913	ENSRNOP00000073356	1322 (aa)	XP_006232975	A0A0G2K5A7
ENSRNOT00000028709	-	4538	XM_006232914	ENSRNOP00000028709	1302 (aa)	XP_006232976	D4A081

Gene Model

Click here to download ENSRNOG00000021143's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno00310	Lysine degradation	KEGG
rno04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000021143's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000021143	Setdb1	100	90.345	ENSG00000143379	SETDB1	100	90.728	Homo_sapiens
ENSRNOG00000021143	Setdb1	51	63.810	ENSAPOG00000016228	setdb1b	99	69.355	Acanthochromis_polyacanthus
ENSRNOG00000021143	Setdb1	100	90.251	ENSAMEG00000001160	SETDB1	100	90.251	Ailuropoda_melanoleuca
ENSRNOG00000021143	Setdb1	88	70.109	ENSACIG00000007359	setdb1b	99	70.109	Amphilophus_citrinellus
ENSRNOG00000021143	Setdb1	80	68.041	ENSAOCG00000005586	setdb1b	99	68.041	Amphiprion_ocellaris
ENSRNOG00000021143	Setdb1	96	62.557	ENSATEG00000023520	setdb1b	99	68.817	Anabas_testudineus
ENSRNOG00000021143	Setdb1	99	75.287	ENSAPLG00000013908	SETDB1	99	75.327	Anas_platyrhynchos
ENSRNOG00000021143	Setdb1	100	90.958	ENSANAG00000001819	SETDB1	100	91.264	Aotus_nancymaae
ENSRNOG00000021143	Setdb1	88	69.565	ENSACLG00000020489	setdb1b	98	70.109	Astatotilapia_calliptera
ENSRNOG00000021143	Setdb1	90	59.197	ENSAMXG00000016168	setdb1b	81	59.298	Astyanax_mexicanus
ENSRNOG00000021143	Setdb1	68	66.165	ENSAMXG00000010030	setdb1a	60	66.165	Astyanax_mexicanus
ENSRNOG00000021143	Setdb1	100	90.575	ENSBTAG00000000098	SETDB1	100	90.728	Bos_taurus
ENSRNOG00000021143	Setdb1	100	90.805	ENSCJAG00000006972	SETDB1	100	91.034	Callithrix_jacchus
ENSRNOG00000021143	Setdb1	100	90.138	ENSCAFG00000023501	SETDB1	100	90.367	Canis_familiaris
ENSRNOG00000021143	Setdb1	100	90.214	ENSCAFG00020013596	SETDB1	100	90.443	Canis_lupus_dingo
ENSRNOG00000021143	Setdb1	100	90.790	ENSCHIG00000010698	SETDB1	100	90.714	Capra_hircus
ENSRNOG00000021143	Setdb1	81	89.384	ENSTSYG00000012646	SETDB1	100	89.289	Carlito_syrichta
ENSRNOG00000021143	Setdb1	79	92.063	ENSCAPG00000013619	SETDB1	99	92.063	Cavia_aperea
ENSRNOG00000021143	Setdb1	100	90.407	ENSCPOG00000001632	SETDB1	100	90.330	Cavia_porcellus
ENSRNOG00000021143	Setdb1	100	90.805	ENSCCAG00000024882	SETDB1	100	91.034	Cebus_capucinus
ENSRNOG00000021143	Setdb1	100	87.126	ENSCATG00000044888	SETDB1	100	87.433	Cercocebus_atys
ENSRNOG00000021143	Setdb1	100	90.008	ENSCLAG00000000242	SETDB1	100	90.389	Chinchilla_lanigera
ENSRNOG00000021143	Setdb1	88	90.972	ENSCSAG00000018034	SETDB1	100	91.319	Chlorocebus_sabaeus
ENSRNOG00000021143	Setdb1	100	81.149	ENSCHOG00000004013	SETDB1	100	81.149	Choloepus_hoffmanni
ENSRNOG00000021143	Setdb1	99	76.783	ENSCPBG00000008716	SETDB1	99	76.730	Chrysemys_picta_bellii
ENSRNOG00000021143	Setdb1	86	92.308	ENSCANG00000036388	SETDB1	95	92.308	Colobus_angolensis_palliatus
ENSRNOG00000021143	Setdb1	100	93.011	ENSCGRG00001010822	Setdb1	100	92.857	Cricetulus_griseus_chok1gshd
ENSRNOG00000021143	Setdb1	100	92.627	ENSCGRG00000005953	Setdb1	100	92.473	Cricetulus_griseus_crigri
ENSRNOG00000021143	Setdb1	89	64.390	ENSCSEG00000002988	setdb1b	98	70.270	Cynoglossus_semilaevis
ENSRNOG00000021143	Setdb1	97	54.755	ENSCVAG00000008877	setdb1b	99	69.110	Cyprinodon_variegatus
ENSRNOG00000021143	Setdb1	87	72.727	ENSDARG00000099021	setdb1b	97	73.446	Danio_rerio
ENSRNOG00000021143	Setdb1	100	89.939	ENSDNOG00000007754	SETDB1	100	90.320	Dasypus_novemcinctus
ENSRNOG00000021143	Setdb1	100	88.447	ENSDORG00000006830	Setdb1	100	88.600	Dipodomys_ordii
ENSRNOG00000021143	Setdb1	71	47.219	ENSEBUG00000005735	setdb1b	95	46.881	Eptatretus_burgeri
ENSRNOG00000021143	Setdb1	100	91.111	ENSEASG00005002061	SETDB1	100	91.341	Equus_asinus_asinus
ENSRNOG00000021143	Setdb1	100	91.264	ENSECAG00000023954	SETDB1	100	91.418	Equus_caballus
ENSRNOG00000021143	Setdb1	83	91.176	ENSEEUG00000015825	SETDB1	83	91.176	Erinaceus_europaeus
ENSRNOG00000021143	Setdb1	63	69.149	ENSELUG00000006204	-	71	69.149	Esox_lucius
ENSRNOG00000021143	Setdb1	88	76.923	ENSELUG00000013948	setdb1b	98	76.923	Esox_lucius
ENSRNOG00000021143	Setdb1	100	88.949	ENSFCAG00000009655	SETDB1	100	89.332	Felis_catus
ENSRNOG00000021143	Setdb1	100	90.337	ENSFDAG00000021515	SETDB1	100	90.261	Fukomys_damarensis
ENSRNOG00000021143	Setdb1	89	67.368	ENSFHEG00000022195	setdb1b	98	69.110	Fundulus_heteroclitus
ENSRNOG00000021143	Setdb1	87	77.059	ENSGMOG00000005993	setdb1b	93	77.059	Gadus_morhua
ENSRNOG00000021143	Setdb1	99	72.901	ENSGALG00000024051	SETDB1	91	72.456	Gallus_gallus
ENSRNOG00000021143	Setdb1	86	63.061	ENSGAFG00000012805	setdb1b	99	55.436	Gambusia_affinis
ENSRNOG00000021143	Setdb1	87	73.099	ENSGACG00000011675	setdb1b	93	74.269	Gasterosteus_aculeatus
ENSRNOG00000021143	Setdb1	99	76.783	ENSGAGG00000005348	SETDB1	99	76.654	Gopherus_agassizii
ENSRNOG00000021143	Setdb1	100	90.421	ENSGGOG00000016308	SETDB1	100	90.805	Gorilla_gorilla
ENSRNOG00000021143	Setdb1	88	69.565	ENSHBUG00000004618	setdb1b	98	70.109	Haplochromis_burtoni
ENSRNOG00000021143	Setdb1	100	89.425	ENSHGLG00000011098	SETDB1	100	89.579	Heterocephalus_glaber_female
ENSRNOG00000021143	Setdb1	100	88.506	ENSHGLG00100009789	SETDB1	100	88.659	Heterocephalus_glaber_male
ENSRNOG00000021143	Setdb1	92	63.636	ENSHCOG00000014567	setdb1b	98	69.189	Hippocampus_comes
ENSRNOG00000021143	Setdb1	87	72.067	ENSIPUG00000004536	setdb1	98	72.626	Ictalurus_punctatus
ENSRNOG00000021143	Setdb1	100	90.433	ENSSTOG00000006770	SETDB1	100	90.661	Ictidomys_tridecemlineatus
ENSRNOG00000021143	Setdb1	92	68.421	ENSKMAG00000001197	setdb1b	99	68.947	Kryptolebias_marmoratus
ENSRNOG00000021143	Setdb1	88	68.108	ENSLBEG00000025862	setdb1b	96	68.649	Labrus_bergylta
ENSRNOG00000021143	Setdb1	99	69.382	ENSLACG00000011159	SETDB1	99	69.096	Latimeria_chalumnae
ENSRNOG00000021143	Setdb1	100	88.838	ENSLAFG00000004006	SETDB1	100	89.526	Loxodonta_africana
ENSRNOG00000021143	Setdb1	100	90.498	ENSMFAG00000042328	SETDB1	100	90.805	Macaca_fascicularis
ENSRNOG00000021143	Setdb1	100	90.651	ENSMMUG00000023235	SETDB1	100	90.958	Macaca_mulatta
ENSRNOG00000021143	Setdb1	100	90.421	ENSMNEG00000017223	SETDB1	100	90.728	Macaca_nemestrina
ENSRNOG00000021143	Setdb1	100	90.498	ENSMLEG00000033050	SETDB1	100	90.805	Mandrillus_leucophaeus
ENSRNOG00000021143	Setdb1	93	68.889	ENSMAMG00000015176	setdb1b	85	69.444	Mastacembelus_armatus
ENSRNOG00000021143	Setdb1	88	69.565	ENSMZEG00005016099	setdb1b	98	70.109	Maylandia_zebra
ENSRNOG00000021143	Setdb1	87	71.000	ENSMGAG00000001018	SETDB1	97	70.429	Meleagris_gallopavo
ENSRNOG00000021143	Setdb1	88	94.565	ENSMAUG00000021391	Setdb1	100	94.565	Mesocricetus_auratus
ENSRNOG00000021143	Setdb1	100	90.985	ENSMICG00000000425	SETDB1	100	90.833	Microcebus_murinus
ENSRNOG00000021143	Setdb1	100	91.020	ENSMOCG00000017407	Setdb1	100	91.172	Microtus_ochrogaster
ENSRNOG00000021143	Setdb1	96	55.705	ENSMMOG00000016162	setdb1b	97	54.644	Mola_mola
ENSRNOG00000021143	Setdb1	99	85.097	ENSMODG00000018821	SETDB1	90	84.942	Monodelphis_domestica
ENSRNOG00000021143	Setdb1	100	96.705	MGP_CAROLIEiJ_G0025342	Setdb1	100	96.705	Mus_caroli
ENSRNOG00000021143	Setdb1	100	96.177	ENSMUSG00000015697	Setdb1	100	96.177	Mus_musculus
ENSRNOG00000021143	Setdb1	100	85.628	ENSMPUG00000004298	SETDB1	100	86.006	Mustela_putorius_furo
ENSRNOG00000021143	Setdb1	100	88.316	ENSMLUG00000010486	SETDB1	100	88.467	Myotis_lucifugus
ENSRNOG00000021143	Setdb1	100	88.949	ENSNGAG00000020151	Setdb1	100	89.639	Nannospalax_galili
ENSRNOG00000021143	Setdb1	96	56.140	ENSNBRG00000003147	setdb1b	99	55.784	Neolamprologus_brichardi
ENSRNOG00000021143	Setdb1	100	87.368	ENSNLEG00000009996	SETDB1	100	87.746	Nomascus_leucogenys
ENSRNOG00000021143	Setdb1	100	77.735	ENSMEUG00000000555	-	100	77.659	Notamacropus_eugenii
ENSRNOG00000021143	Setdb1	87	86.551	ENSMEUG00000006544	-	87	86.910	Notamacropus_eugenii
ENSRNOG00000021143	Setdb1	97	88.300	ENSOPRG00000015349	SETDB1	100	88.221	Ochotona_princeps
ENSRNOG00000021143	Setdb1	100	90.867	ENSODEG00000012471	SETDB1	100	90.714	Octodon_degus
ENSRNOG00000021143	Setdb1	88	69.565	ENSONIG00000006454	setdb1b	98	70.109	Oreochromis_niloticus
ENSRNOG00000021143	Setdb1	100	89.732	ENSOCUG00000003642	SETDB1	100	89.808	Oryctolagus_cuniculus
ENSRNOG00000021143	Setdb1	94	65.347	ENSORLG00000010602	setdb1b	98	67.526	Oryzias_latipes
ENSRNOG00000021143	Setdb1	58	79.878	ENSORLG00020008638	setdb1b	95	58.935	Oryzias_latipes_hni
ENSRNOG00000021143	Setdb1	94	63.768	ENSORLG00015014543	setdb1b	98	65.829	Oryzias_latipes_hsok
ENSRNOG00000021143	Setdb1	94	65.672	ENSOMEG00000009457	setdb1b	98	68.750	Oryzias_melastigma
ENSRNOG00000021143	Setdb1	100	85.418	ENSOGAG00000010320	SETDB1	100	85.342	Otolemur_garnettii
ENSRNOG00000021143	Setdb1	100	90.443	ENSOARG00000020880	SETDB1	100	90.367	Ovis_aries
ENSRNOG00000021143	Setdb1	100	90.345	ENSPPAG00000041015	SETDB1	100	90.651	Pan_paniscus
ENSRNOG00000021143	Setdb1	100	89.962	ENSPPRG00000005462	SETDB1	100	90.192	Panthera_pardus
ENSRNOG00000021143	Setdb1	100	89.486	ENSPTIG00000014233	SETDB1	100	89.563	Panthera_tigris_altaica
ENSRNOG00000021143	Setdb1	100	90.268	ENSPTRG00000001267	SETDB1	100	90.651	Pan_troglodytes
ENSRNOG00000021143	Setdb1	100	88.046	ENSPANG00000020214	SETDB1	100	88.429	Papio_anubis
ENSRNOG00000021143	Setdb1	98	54.883	ENSPKIG00000010963	setdb1b	100	57.678	Paramormyrops_kingsleyae
ENSRNOG00000021143	Setdb1	56	77.267	ENSPSIG00000008407	SETDB1	85	76.590	Pelodiscus_sinensis
ENSRNOG00000021143	Setdb1	93	93.333	ENSPEMG00000010553	Setdb1	99	93.251	Peromyscus_maniculatus_bairdii
ENSRNOG00000021143	Setdb1	98	50.732	ENSPMAG00000001573	setdb1b	92	71.676	Petromyzon_marinus
ENSRNOG00000021143	Setdb1	98	54.359	ENSPFOG00000004429	setdb1b	97	60.603	Poecilia_formosa
ENSRNOG00000021143	Setdb1	98	56.198	ENSPFOG00000004623	-	98	55.733	Poecilia_formosa
ENSRNOG00000021143	Setdb1	96	52.627	ENSPLAG00000017117	setdb1b	99	55.000	Poecilia_latipinna
ENSRNOG00000021143	Setdb1	98	53.141	ENSPLAG00000019076	-	99	55.000	Poecilia_latipinna
ENSRNOG00000021143	Setdb1	99	52.577	ENSPMEG00000006468	setdb1b	99	54.982	Poecilia_mexicana
ENSRNOG00000021143	Setdb1	99	51.983	ENSPREG00000017459	setdb1b	99	54.713	Poecilia_reticulata
ENSRNOG00000021143	Setdb1	100	90.421	ENSPPYG00000000887	SETDB1	100	90.805	Pongo_abelii
ENSRNOG00000021143	Setdb1	85	87.928	ENSPCAG00000002527	SETDB1	100	88.029	Procavia_capensis
ENSRNOG00000021143	Setdb1	100	90.805	ENSPCOG00000027869	SETDB1	100	91.111	Propithecus_coquereli
ENSRNOG00000021143	Setdb1	94	86.988	ENSPVAG00000004355	SETDB1	93	87.295	Pteropus_vampyrus
ENSRNOG00000021143	Setdb1	96	55.189	ENSPNYG00000003997	setdb1b	98	70.109	Pundamilia_nyererei
ENSRNOG00000021143	Setdb1	89	65.421	ENSPNAG00000021617	setdb1b	91	71.739	Pygocentrus_nattereri
ENSRNOG00000021143	Setdb1	74	63.014	ENSPNAG00000003444	setdb1a	63	63.014	Pygocentrus_nattereri
ENSRNOG00000021143	Setdb1	100	90.575	ENSRBIG00000042359	SETDB1	100	90.881	Rhinopithecus_bieti
ENSRNOG00000021143	Setdb1	100	90.728	ENSRROG00000032628	SETDB1	100	91.034	Rhinopithecus_roxellana
ENSRNOG00000021143	Setdb1	100	90.881	ENSSBOG00000028608	SETDB1	100	91.188	Saimiri_boliviensis_boliviensis
ENSRNOG00000021143	Setdb1	100	84.533	ENSSHAG00000012701	SETDB1	100	84.114	Sarcophilus_harrisii
ENSRNOG00000021143	Setdb1	89	69.347	ENSSFOG00015022183	setdb1	96	76.000	Scleropages_formosus
ENSRNOG00000021143	Setdb1	95	65.403	ENSSDUG00000007513	setdb1b	99	69.271	Seriola_dumerili
ENSRNOG00000021143	Setdb1	59	65.403	ENSSLDG00000015209	setdb1b	99	69.588	Seriola_lalandi_dorsalis
ENSRNOG00000021143	Setdb1	99	74.365	ENSSPUG00000002969	SETDB1	99	74.111	Sphenodon_punctatus
ENSRNOG00000021143	Setdb1	100	89.977	ENSSSCG00000006645	SETDB1	100	90.121	Sus_scrofa
ENSRNOG00000021143	Setdb1	94	71.555	ENSTGUG00000004684	SETDB1	100	71.244	Taeniopygia_guttata
ENSRNOG00000021143	Setdb1	87	67.914	ENSTRUG00000014641	setdb1b	92	67.914	Takifugu_rubripes
ENSRNOG00000021143	Setdb1	93	91.232	ENSTBEG00000009306	SETDB1	100	91.067	Tupaia_belangeri
ENSRNOG00000021143	Setdb1	89	89.042	ENSTTRG00000006966	SETDB1	89	89.437	Tursiops_truncatus
ENSRNOG00000021143	Setdb1	100	89.779	ENSUAMG00000026724	SETDB1	100	90.008	Ursus_americanus
ENSRNOG00000021143	Setdb1	100	86.012	ENSUMAG00000003141	SETDB1	100	86.235	Ursus_maritimus
ENSRNOG00000021143	Setdb1	75	94.444	ENSVPAG00000005440	SETDB1	78	94.444	Vicugna_pacos
ENSRNOG00000021143	Setdb1	100	89.985	ENSVVUG00000011637	SETDB1	100	90.214	Vulpes_vulpes
ENSRNOG00000021143	Setdb1	99	68.850	ENSXETG00000008936	setdb1	99	68.731	Xenopus_tropicalis
ENSRNOG00000021143	Setdb1	98	55.223	ENSXCOG00000019497	setdb1b	92	61.883	Xiphophorus_couchianus
ENSRNOG00000021143	Setdb1	99	52.792	ENSXMAG00000016600	setdb1b	99	54.839	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0001833	inner cell mass cell proliferation	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0007265	Ras protein signal transduction	-	IEA	Process
GO:0007265	Ras protein signal transduction	-	ISO	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	ISO	Function
GO:0033273	response to vitamin	23413810.	IEP	Process
GO:0034968	histone lysine methylation	-	IEA	Process
GO:0036124	histone H3-K9 trimethylation	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045471	response to ethanol	23413810.	IEP	Process
GO:0045869	negative regulation of single stranded viral RNA replication via double stranded DNA intermediate	-	ISO	Process
GO:0046974	histone methyltransferase activity (H3-K9 specific)	-	IEA	Function
GO:0046974	histone methyltransferase activity (H3-K9 specific)	-	ISO	Function
GO:0051567	histone H3-K9 methylation	-	IEA	Process
GO:0060348	bone development	-	ISO	Process
GO:0090309	positive regulation of methylation-dependent chromatin silencing	-	IEA	Process
GO:0090309	positive regulation of methylation-dependent chromatin silencing	-	ISO	Process
GO:1990841	promoter-specific chromatin binding	-	IEA	Function
GO:1990841	promoter-specific chromatin binding	-	ISO	Function