EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000021181 (Gene tree)
Gene ID: 295270
Gene Symbol: Sf3b4
Alias: LOC295270
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 4753 bases
Position: chr2:198312428-198317180
Accession: 1309667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000028758	RRM_1	PF00076.22	3.1e-39	1	2
ENSRNOP00000028758	RRM_1	PF00076.22	3.1e-39	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000028758	-	1533	-	ENSRNOP00000028758	424 (aa)	-	Q6AYL5

Gene Model

Click here to download ENSRNOG00000021181's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000021181's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000021181	Sf3b4	70	39.344	ENSRNOG00000008639	Pabpc1	68	39.344
ENSRNOG00000021181	Sf3b4	54	39.205	ENSRNOG00000029749	Pabpc4l	98	37.173

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000021181	Sf3b4	100	99.528	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
ENSRNOG00000021181	Sf3b4	57	96.667	ENSAPOG00000017647	sf3b4	60	96.667	Acanthochromis_polyacanthus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSAMEG00000010073	SF3B4	100	99.764	Ailuropoda_melanoleuca
ENSRNOG00000021181	Sf3b4	57	96.667	ENSAOCG00000019801	sf3b4	60	96.667	Amphiprion_ocellaris
ENSRNOG00000021181	Sf3b4	57	96.667	ENSAPEG00000010365	sf3b4	60	96.667	Amphiprion_percula
ENSRNOG00000021181	Sf3b4	57	96.250	ENSATEG00000012844	sf3b4	60	96.250	Anabas_testudineus
ENSRNOG00000021181	Sf3b4	62	96.198	ENSACAG00000010019	SF3B4	90	89.817	Anolis_carolinensis
ENSRNOG00000021181	Sf3b4	100	99.528	ENSANAG00000031025	SF3B4	100	99.528	Aotus_nancymaae
ENSRNOG00000021181	Sf3b4	57	95.833	ENSACLG00000014260	sf3b4	60	95.833	Astatotilapia_calliptera
ENSRNOG00000021181	Sf3b4	57	96.250	ENSAMXG00000008282	sf3b4	60	96.250	Astyanax_mexicanus
ENSRNOG00000021181	Sf3b4	91	96.354	ENSBTAG00000012793	-	93	96.354	Bos_taurus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSBTAG00000012495	SF3B4	100	99.764	Bos_taurus
ENSRNOG00000021181	Sf3b4	90	81.787	ENSCJAG00000042351	SF3B4	87	81.787	Callithrix_jacchus
ENSRNOG00000021181	Sf3b4	100	99.292	ENSCAFG00000011617	SF3B4	100	99.292	Canis_familiaris
ENSRNOG00000021181	Sf3b4	100	99.292	ENSCAFG00020019775	SF3B4	100	99.292	Canis_lupus_dingo
ENSRNOG00000021181	Sf3b4	100	99.764	ENSCHIG00000025663	-	100	99.764	Capra_hircus
ENSRNOG00000021181	Sf3b4	100	99.528	ENSTSYG00000009295	SF3B4	100	99.528	Carlito_syrichta
ENSRNOG00000021181	Sf3b4	100	99.528	ENSCPOG00000008267	SF3B4	100	99.528	Cavia_porcellus
ENSRNOG00000021181	Sf3b4	95	85.323	ENSCCAG00000019823	-	77	86.196	Cebus_capucinus
ENSRNOG00000021181	Sf3b4	100	86.768	ENSCCAG00000021751	-	69	92.593	Cebus_capucinus
ENSRNOG00000021181	Sf3b4	100	99.528	ENSCATG00000033114	SF3B4	100	99.528	Cercocebus_atys
ENSRNOG00000021181	Sf3b4	100	99.528	ENSCLAG00000015851	SF3B4	100	99.528	Chinchilla_lanigera
ENSRNOG00000021181	Sf3b4	100	99.528	ENSCSAG00000018129	SF3B4	100	99.528	Chlorocebus_sabaeus
ENSRNOG00000021181	Sf3b4	99	85.849	ENSCPBG00000008041	SF3B4	91	90.625	Chrysemys_picta_bellii
ENSRNOG00000021181	Sf3b4	51	90.698	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSRNOG00000021181	Sf3b4	100	99.528	ENSCANG00000035579	SF3B4	100	99.528	Colobus_angolensis_palliatus
ENSRNOG00000021181	Sf3b4	100	100.000	ENSCGRG00001003590	Sf3b4	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000021181	Sf3b4	100	100.000	ENSCGRG00000016914	Sf3b4	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000021181	Sf3b4	57	96.250	ENSDARG00000018574	sf3b4	60	96.250	Danio_rerio
ENSRNOG00000021181	Sf3b4	97	80.872	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSRNOG00000021181	Sf3b4	98	96.875	ENSDNOG00000048908	-	99	96.875	Dasypus_novemcinctus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSDORG00000016366	Sf3b4	100	99.764	Dipodomys_ordii
ENSRNOG00000021181	Sf3b4	52	86.425	FBgn0015818	Spx	61	88.152	Drosophila_melanogaster
ENSRNOG00000021181	Sf3b4	76	92.593	ENSETEG00000008963	SF3B4	76	92.593	Echinops_telfairi
ENSRNOG00000021181	Sf3b4	100	99.764	ENSEASG00005001477	SF3B4	100	99.764	Equus_asinus_asinus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSECAG00000024737	SF3B4	100	99.764	Equus_caballus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSFCAG00000010106	SF3B4	100	99.764	Felis_catus
ENSRNOG00000021181	Sf3b4	100	99.528	ENSFDAG00000009286	SF3B4	100	99.528	Fukomys_damarensis
ENSRNOG00000021181	Sf3b4	54	96.957	ENSGMOG00000002519	sf3b4	67	97.368	Gadus_morhua
ENSRNOG00000021181	Sf3b4	99	89.362	ENSGALG00000013352	SF3B4	90	89.817	Gallus_gallus
ENSRNOG00000021181	Sf3b4	63	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
ENSRNOG00000021181	Sf3b4	99	85.613	ENSGAGG00000025055	SF3B4	79	90.365	Gopherus_agassizii
ENSRNOG00000021181	Sf3b4	100	99.528	ENSGGOG00000004761	SF3B4	100	99.528	Gorilla_gorilla
ENSRNOG00000021181	Sf3b4	100	73.349	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSRNOG00000021181	Sf3b4	57	95.833	ENSHBUG00000002028	sf3b4	60	95.833	Haplochromis_burtoni
ENSRNOG00000021181	Sf3b4	100	99.528	ENSHGLG00000012360	SF3B4	100	99.528	Heterocephalus_glaber_female
ENSRNOG00000021181	Sf3b4	100	98.585	ENSHGLG00100008533	SF3B4	100	98.585	Heterocephalus_glaber_male
ENSRNOG00000021181	Sf3b4	57	96.667	ENSIPUG00000012242	Sf3b4	60	96.667	Ictalurus_punctatus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSSTOG00000000684	-	100	99.764	Ictidomys_tridecemlineatus
ENSRNOG00000021181	Sf3b4	76	84.914	ENSJJAG00000022500	Sf3b4	95	85.281	Jaculus_jaculus
ENSRNOG00000021181	Sf3b4	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
ENSRNOG00000021181	Sf3b4	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
ENSRNOG00000021181	Sf3b4	57	95.473	ENSLACG00000004436	SF3B4	67	95.473	Latimeria_chalumnae
ENSRNOG00000021181	Sf3b4	57	95.885	ENSLOCG00000009048	sf3b4	75	85.580	Lepisosteus_oculatus
ENSRNOG00000021181	Sf3b4	100	99.294	ENSLAFG00000008531	SF3B4	100	99.294	Loxodonta_africana
ENSRNOG00000021181	Sf3b4	92	71.066	ENSMFAG00000039067	-	57	80.930	Macaca_fascicularis
ENSRNOG00000021181	Sf3b4	100	99.528	ENSMFAG00000042395	SF3B4	100	99.528	Macaca_fascicularis
ENSRNOG00000021181	Sf3b4	100	99.528	ENSMMUG00000007256	SF3B4	100	99.528	Macaca_mulatta
ENSRNOG00000021181	Sf3b4	92	70.558	ENSMNEG00000031526	-	57	80.465	Macaca_nemestrina
ENSRNOG00000021181	Sf3b4	100	99.528	ENSMNEG00000031839	SF3B4	100	99.528	Macaca_nemestrina
ENSRNOG00000021181	Sf3b4	100	99.528	ENSMLEG00000038667	SF3B4	100	99.528	Mandrillus_leucophaeus
ENSRNOG00000021181	Sf3b4	57	97.083	ENSMAMG00000014692	sf3b4	60	97.083	Mastacembelus_armatus
ENSRNOG00000021181	Sf3b4	57	95.833	ENSMZEG00005026741	sf3b4	60	95.833	Maylandia_zebra
ENSRNOG00000021181	Sf3b4	99	87.943	ENSMGAG00000000653	SF3B4	91	87.990	Meleagris_gallopavo
ENSRNOG00000021181	Sf3b4	100	100.000	ENSMAUG00000015266	Sf3b4	100	100.000	Mesocricetus_auratus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSMICG00000044961	SF3B4	100	99.764	Microcebus_murinus
ENSRNOG00000021181	Sf3b4	98	94.940	ENSMOCG00000014155	-	100	94.940	Microtus_ochrogaster
ENSRNOG00000021181	Sf3b4	100	99.764	ENSMOCG00000013658	-	100	99.764	Microtus_ochrogaster
ENSRNOG00000021181	Sf3b4	54	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSRNOG00000021181	Sf3b4	100	99.057	ENSMODG00000018767	SF3B4	100	99.057	Monodelphis_domestica
ENSRNOG00000021181	Sf3b4	54	97.797	ENSMALG00000006174	sf3b4	57	97.368	Monopterus_albus
ENSRNOG00000021181	Sf3b4	100	99.764	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.764	Mus_caroli
ENSRNOG00000021181	Sf3b4	100	100.000	ENSMUSG00000068856	Sf3b4	100	100.000	Mus_musculus
ENSRNOG00000021181	Sf3b4	100	100.000	MGP_PahariEiJ_G0026809	Sf3b4	100	100.000	Mus_pahari
ENSRNOG00000021181	Sf3b4	100	100.000	MGP_SPRETEiJ_G0026309	Sf3b4	100	100.000	Mus_spretus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSMPUG00000005563	SF3B4	100	99.764	Mustela_putorius_furo
ENSRNOG00000021181	Sf3b4	100	99.528	ENSMLUG00000010789	SF3B4	100	99.528	Myotis_lucifugus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSNGAG00000016337	Sf3b4	100	99.764	Nannospalax_galili
ENSRNOG00000021181	Sf3b4	57	96.250	ENSNBRG00000013865	sf3b4	60	96.250	Neolamprologus_brichardi
ENSRNOG00000021181	Sf3b4	100	69.860	ENSNLEG00000009693	-	100	69.860	Nomascus_leucogenys
ENSRNOG00000021181	Sf3b4	100	76.415	ENSNLEG00000000537	-	60	90.678	Nomascus_leucogenys
ENSRNOG00000021181	Sf3b4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSRNOG00000021181	Sf3b4	99	97.625	ENSOPRG00000010808	SF3B4	99	97.625	Ochotona_princeps
ENSRNOG00000021181	Sf3b4	75	86.751	ENSODEG00000003597	-	79	86.751	Octodon_degus
ENSRNOG00000021181	Sf3b4	56	95.359	ENSONIG00000002730	sf3b4	57	97.807	Oreochromis_niloticus
ENSRNOG00000021181	Sf3b4	99	58.372	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSOCUG00000004614	SF3B4	100	99.764	Oryctolagus_cuniculus
ENSRNOG00000021181	Sf3b4	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
ENSRNOG00000021181	Sf3b4	100	99.764	ENSOGAG00000006265	SF3B4	100	99.764	Otolemur_garnettii
ENSRNOG00000021181	Sf3b4	100	99.764	ENSOARG00000020718	-	100	99.764	Ovis_aries
ENSRNOG00000021181	Sf3b4	86	78.571	ENSOARG00000007368	-	55	83.482	Ovis_aries
ENSRNOG00000021181	Sf3b4	100	81.604	ENSPPAG00000030024	-	58	89.831	Pan_paniscus
ENSRNOG00000021181	Sf3b4	100	99.528	ENSPPAG00000040904	SF3B4	100	99.528	Pan_paniscus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSPPRG00000007384	SF3B4	100	99.764	Panthera_pardus
ENSRNOG00000021181	Sf3b4	100	99.292	ENSPTIG00000014530	SF3B4	100	99.292	Panthera_tigris_altaica
ENSRNOG00000021181	Sf3b4	100	79.009	ENSPTRG00000049727	-	59	90.254	Pan_troglodytes
ENSRNOG00000021181	Sf3b4	100	99.528	ENSPTRG00000001243	SF3B4	100	99.528	Pan_troglodytes
ENSRNOG00000021181	Sf3b4	100	99.528	ENSPANG00000005126	SF3B4	100	99.528	Papio_anubis
ENSRNOG00000021181	Sf3b4	55	97.425	ENSPKIG00000020669	sf3b4	60	98.246	Paramormyrops_kingsleyae
ENSRNOG00000021181	Sf3b4	66	75.714	ENSPSIG00000009565	SF3B4	68	98.378	Pelodiscus_sinensis
ENSRNOG00000021181	Sf3b4	100	100.000	ENSPEMG00000017568	Sf3b4	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000021181	Sf3b4	61	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSRNOG00000021181	Sf3b4	100	99.057	ENSPCIG00000008765	SF3B4	100	99.057	Phascolarctos_cinereus
ENSRNOG00000021181	Sf3b4	64	90.476	ENSPFOG00000005754	sf3b4	58	97.368	Poecilia_formosa
ENSRNOG00000021181	Sf3b4	64	90.476	ENSPLAG00000001401	sf3b4	63	97.368	Poecilia_latipinna
ENSRNOG00000021181	Sf3b4	64	90.476	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
ENSRNOG00000021181	Sf3b4	63	96.635	ENSPCAG00000000392	SF3B4	63	96.635	Procavia_capensis
ENSRNOG00000021181	Sf3b4	100	99.764	ENSPCOG00000015399	SF3B4	100	99.764	Propithecus_coquereli
ENSRNOG00000021181	Sf3b4	100	99.764	ENSPVAG00000014171	SF3B4	100	99.764	Pteropus_vampyrus
ENSRNOG00000021181	Sf3b4	57	95.833	ENSPNYG00000012700	sf3b4	60	95.833	Pundamilia_nyererei
ENSRNOG00000021181	Sf3b4	57	96.667	ENSPNAG00000000686	sf3b4	61	96.667	Pygocentrus_nattereri
ENSRNOG00000021181	Sf3b4	100	99.528	ENSRBIG00000043392	SF3B4	100	99.528	Rhinopithecus_bieti
ENSRNOG00000021181	Sf3b4	100	99.528	ENSRROG00000029366	SF3B4	100	99.528	Rhinopithecus_roxellana
ENSRNOG00000021181	Sf3b4	92	71.208	ENSRROG00000028213	-	56	76.364	Rhinopithecus_roxellana
ENSRNOG00000021181	Sf3b4	100	99.292	ENSSBOG00000012310	-	100	99.292	Saimiri_boliviensis_boliviensis
ENSRNOG00000021181	Sf3b4	100	96.462	ENSSHAG00000004043	SF3B4	100	98.688	Sarcophilus_harrisii
ENSRNOG00000021181	Sf3b4	56	96.624	ENSSFOG00015008864	sf3b4	56	98.246	Scleropages_formosus
ENSRNOG00000021181	Sf3b4	57	96.667	ENSSMAG00000006837	sf3b4	60	96.667	Scophthalmus_maximus
ENSRNOG00000021181	Sf3b4	57	97.083	ENSSDUG00000012064	sf3b4	60	97.083	Seriola_dumerili
ENSRNOG00000021181	Sf3b4	57	97.083	ENSSLDG00000014226	sf3b4	60	97.083	Seriola_lalandi_dorsalis
ENSRNOG00000021181	Sf3b4	72	95.102	ENSSPUG00000001028	SF3B4	57	98.684	Sphenodon_punctatus
ENSRNOG00000021181	Sf3b4	57	97.500	ENSSPAG00000019219	sf3b4	60	97.500	Stegastes_partitus
ENSRNOG00000021181	Sf3b4	100	99.528	ENSSSCG00000006665	-	100	99.528	Sus_scrofa
ENSRNOG00000021181	Sf3b4	85	66.022	ENSSSCG00000039440	-	58	87.097	Sus_scrofa
ENSRNOG00000021181	Sf3b4	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
ENSRNOG00000021181	Sf3b4	54	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
ENSRNOG00000021181	Sf3b4	100	99.764	ENSTTRG00000005217	SF3B4	100	99.764	Tursiops_truncatus
ENSRNOG00000021181	Sf3b4	100	99.764	ENSUAMG00000022468	SF3B4	100	99.764	Ursus_americanus
ENSRNOG00000021181	Sf3b4	100	99.292	ENSUMAG00000003802	SF3B4	100	99.292	Ursus_maritimus
ENSRNOG00000021181	Sf3b4	97	99.757	ENSVPAG00000008152	SF3B4	100	99.757	Vicugna_pacos
ENSRNOG00000021181	Sf3b4	99	92.584	ENSVVUG00000007732	-	100	92.584	Vulpes_vulpes
ENSRNOG00000021181	Sf3b4	61	96.899	ENSVVUG00000022697	-	54	96.899	Vulpes_vulpes
ENSRNOG00000021181	Sf3b4	54	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
ENSRNOG00000021181	Sf3b4	54	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component