EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000021678 (Gene tree)
Gene ID: 362169
Gene Symbol: Alkbh3
Alias: LOC362169
Full Name: alkB homolog 3%2C alpha-ketoglutarate-dependent dioxygenase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 32334 bases
Position: chr3:82874248-82906581
Accession: 1359731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000030278	2OG-FeII_Oxy_2	PF13532.6	1e-30	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000030784	-	1260	XM_006234585	ENSRNOP00000030278	295 (aa)	XP_006234647	Q5XIC8

Gene Model

Click here to download ENSRNOG00000021678's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000021678's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000021678	Alkbh3	64	36.224	ENSRNOG00000028584	Alkbh2	80	36.082

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000021678	Alkbh3	97	86.667	ENSG00000166199	ALKBH3	99	86.667	Homo_sapiens
ENSRNOG00000021678	Alkbh3	96	55.903	ENSAPOG00000008495	alkbh3	95	55.903	Acanthochromis_polyacanthus
ENSRNOG00000021678	Alkbh3	99	79.725	ENSAMEG00000004842	ALKBH3	99	79.725	Ailuropoda_melanoleuca
ENSRNOG00000021678	Alkbh3	95	53.571	ENSACIG00000011887	alkbh3	100	53.571	Amphilophus_citrinellus
ENSRNOG00000021678	Alkbh3	96	54.861	ENSAOCG00000023500	alkbh3	95	54.861	Amphiprion_ocellaris
ENSRNOG00000021678	Alkbh3	96	54.861	ENSAPEG00000011723	alkbh3	95	54.861	Amphiprion_percula
ENSRNOG00000021678	Alkbh3	96	54.737	ENSATEG00000021785	alkbh3	95	54.737	Anabas_testudineus
ENSRNOG00000021678	Alkbh3	95	50.842	ENSACAG00000000855	ALKBH3	98	51.515	Anolis_carolinensis
ENSRNOG00000021678	Alkbh3	97	82.639	ENSANAG00000033941	ALKBH3	99	82.639	Aotus_nancymaae
ENSRNOG00000021678	Alkbh3	96	54.035	ENSACLG00000023226	alkbh3	96	54.035	Astatotilapia_calliptera
ENSRNOG00000021678	Alkbh3	95	58.363	ENSAMXG00000037076	alkbh3	98	58.363	Astyanax_mexicanus
ENSRNOG00000021678	Alkbh3	96	80.634	ENSBTAG00000009518	ALKBH3	99	80.634	Bos_taurus
ENSRNOG00000021678	Alkbh3	95	82.746	ENSCJAG00000011353	ALKBH3	100	82.746	Callithrix_jacchus
ENSRNOG00000021678	Alkbh3	97	81.469	ENSCAFG00000006657	ALKBH3	99	81.469	Canis_familiaris
ENSRNOG00000021678	Alkbh3	97	81.818	ENSCAFG00020006841	ALKBH3	99	81.818	Canis_lupus_dingo
ENSRNOG00000021678	Alkbh3	96	80.986	ENSCHIG00000017579	ALKBH3	99	80.986	Capra_hircus
ENSRNOG00000021678	Alkbh3	96	84.507	ENSTSYG00000005498	ALKBH3	99	84.507	Carlito_syrichta
ENSRNOG00000021678	Alkbh3	97	79.298	ENSCAPG00000004995	ALKBH3	99	79.298	Cavia_aperea
ENSRNOG00000021678	Alkbh3	97	81.754	ENSCPOG00000005138	ALKBH3	99	81.754	Cavia_porcellus
ENSRNOG00000021678	Alkbh3	97	82.986	ENSCCAG00000036907	ALKBH3	99	82.986	Cebus_capucinus
ENSRNOG00000021678	Alkbh3	97	85.965	ENSCATG00000035646	ALKBH3	99	85.965	Cercocebus_atys
ENSRNOG00000021678	Alkbh3	97	82.105	ENSCLAG00000016579	ALKBH3	99	82.105	Chinchilla_lanigera
ENSRNOG00000021678	Alkbh3	97	84.912	ENSCSAG00000005539	ALKBH3	99	84.912	Chlorocebus_sabaeus
ENSRNOG00000021678	Alkbh3	96	81.882	ENSCHOG00000001407	ALKBH3	99	81.882	Choloepus_hoffmanni
ENSRNOG00000021678	Alkbh3	96	68.531	ENSCPBG00000012575	ALKBH3	99	68.531	Chrysemys_picta_bellii
ENSRNOG00000021678	Alkbh3	51	58.000	ENSCING00000007764	-	97	58.000	Ciona_intestinalis
ENSRNOG00000021678	Alkbh3	93	42.182	ENSCSAVG00000000783	-	98	42.182	Ciona_savignyi
ENSRNOG00000021678	Alkbh3	97	85.614	ENSCANG00000018698	ALKBH3	99	85.614	Colobus_angolensis_palliatus
ENSRNOG00000021678	Alkbh3	96	90.141	ENSCGRG00001014489	Alkbh3	99	90.141	Cricetulus_griseus_chok1gshd
ENSRNOG00000021678	Alkbh3	96	90.141	ENSCGRG00000017661	Alkbh3	99	90.141	Cricetulus_griseus_crigri
ENSRNOG00000021678	Alkbh3	96	53.684	ENSCSEG00000000814	alkbh3	95	53.684	Cynoglossus_semilaevis
ENSRNOG00000021678	Alkbh3	96	54.577	ENSCVAG00000009432	alkbh3	95	54.577	Cyprinodon_variegatus
ENSRNOG00000021678	Alkbh3	97	55.052	ENSDARG00000045606	alkbh3	99	55.052	Danio_rerio
ENSRNOG00000021678	Alkbh3	96	83.039	ENSDNOG00000036652	ALKBH3	99	83.039	Dasypus_novemcinctus
ENSRNOG00000021678	Alkbh3	97	84.211	ENSDORG00000000083	Alkbh3	99	84.211	Dipodomys_ordii
ENSRNOG00000021678	Alkbh3	96	83.392	ENSEASG00005014856	ALKBH3	96	83.392	Equus_asinus_asinus
ENSRNOG00000021678	Alkbh3	96	83.746	ENSECAG00000010673	ALKBH3	96	83.746	Equus_caballus
ENSRNOG00000021678	Alkbh3	76	56.502	ENSEEUG00000002183	ALKBH3	77	56.502	Erinaceus_europaeus
ENSRNOG00000021678	Alkbh3	94	49.643	ENSELUG00000003260	alkbh3	94	49.643	Esox_lucius
ENSRNOG00000021678	Alkbh3	96	82.746	ENSFCAG00000029461	ALKBH3	99	82.746	Felis_catus
ENSRNOG00000021678	Alkbh3	95	66.901	ENSFALG00000012361	ALKBH3	98	66.901	Ficedula_albicollis
ENSRNOG00000021678	Alkbh3	97	82.456	ENSFDAG00000012666	ALKBH3	99	82.456	Fukomys_damarensis
ENSRNOG00000021678	Alkbh3	96	53.710	ENSFHEG00000018735	alkbh3	95	53.710	Fundulus_heteroclitus
ENSRNOG00000021678	Alkbh3	96	53.633	ENSGMOG00000019146	alkbh3	96	53.633	Gadus_morhua
ENSRNOG00000021678	Alkbh3	86	67.843	ENSGALG00000041309	ALKBH3	66	67.843	Gallus_gallus
ENSRNOG00000021678	Alkbh3	96	52.982	ENSGAFG00000005814	alkbh3	97	51.724	Gambusia_affinis
ENSRNOG00000021678	Alkbh3	96	53.497	ENSGACG00000006950	alkbh3	99	52.297	Gasterosteus_aculeatus
ENSRNOG00000021678	Alkbh3	68	75.000	ENSGAGG00000013151	ALKBH3	99	75.000	Gopherus_agassizii
ENSRNOG00000021678	Alkbh3	97	86.316	ENSGGOG00000001931	ALKBH3	99	86.316	Gorilla_gorilla
ENSRNOG00000021678	Alkbh3	96	54.035	ENSHBUG00000008513	alkbh3	96	54.035	Haplochromis_burtoni
ENSRNOG00000021678	Alkbh3	97	81.754	ENSHGLG00000019437	ALKBH3	99	83.860	Heterocephalus_glaber_female
ENSRNOG00000021678	Alkbh3	97	73.684	ENSHGLG00100004468	ALKBH3	99	76.491	Heterocephalus_glaber_male
ENSRNOG00000021678	Alkbh3	95	54.770	ENSIPUG00000017036	alkbh3	98	54.770	Ictalurus_punctatus
ENSRNOG00000021678	Alkbh3	95	85.409	ENSSTOG00000006060	ALKBH3	100	85.409	Ictidomys_tridecemlineatus
ENSRNOG00000021678	Alkbh3	99	79.522	ENSJJAG00000018577	-	99	79.522	Jaculus_jaculus
ENSRNOG00000021678	Alkbh3	96	53.169	ENSKMAG00000006499	alkbh3	95	53.169	Kryptolebias_marmoratus
ENSRNOG00000021678	Alkbh3	96	53.004	ENSLBEG00000004226	alkbh3	95	53.004	Labrus_bergylta
ENSRNOG00000021678	Alkbh3	95	59.516	ENSLACG00000017208	ALKBH3	99	59.516	Latimeria_chalumnae
ENSRNOG00000021678	Alkbh3	95	54.737	ENSLOCG00000001237	alkbh3	100	54.737	Lepisosteus_oculatus
ENSRNOG00000021678	Alkbh3	96	84.155	ENSLAFG00000003441	ALKBH3	99	84.155	Loxodonta_africana
ENSRNOG00000021678	Alkbh3	97	85.965	ENSMFAG00000031334	ALKBH3	99	85.965	Macaca_fascicularis
ENSRNOG00000021678	Alkbh3	97	85.965	ENSMNEG00000042403	ALKBH3	99	85.965	Macaca_nemestrina
ENSRNOG00000021678	Alkbh3	97	85.614	ENSMLEG00000038324	ALKBH3	99	85.614	Mandrillus_leucophaeus
ENSRNOG00000021678	Alkbh3	96	55.245	ENSMAMG00000023051	alkbh3	95	55.245	Mastacembelus_armatus
ENSRNOG00000021678	Alkbh3	96	54.035	ENSMZEG00005011786	alkbh3	96	54.035	Maylandia_zebra
ENSRNOG00000021678	Alkbh3	76	66.518	ENSMGAG00000010479	ALKBH3	99	66.518	Meleagris_gallopavo
ENSRNOG00000021678	Alkbh3	96	89.437	ENSMAUG00000009317	Alkbh3	99	89.437	Mesocricetus_auratus
ENSRNOG00000021678	Alkbh3	96	86.268	ENSMICG00000014651	ALKBH3	99	86.268	Microcebus_murinus
ENSRNOG00000021678	Alkbh3	97	85.764	ENSMOCG00000012816	Alkbh3	99	85.764	Microtus_ochrogaster
ENSRNOG00000021678	Alkbh3	96	47.387	ENSMMOG00000020327	alkbh3	93	47.183	Mola_mola
ENSRNOG00000021678	Alkbh3	79	79.149	ENSMODG00000019863	-	95	79.149	Monodelphis_domestica
ENSRNOG00000021678	Alkbh3	96	54.225	ENSMALG00000017888	alkbh3	95	54.225	Monopterus_albus
ENSRNOG00000021678	Alkbh3	97	92.982	MGP_CAROLIEiJ_G0023995	Alkbh3	99	92.982	Mus_caroli
ENSRNOG00000021678	Alkbh3	97	94.386	ENSMUSG00000040174	Alkbh3	99	94.386	Mus_musculus
ENSRNOG00000021678	Alkbh3	97	93.684	MGP_PahariEiJ_G0025431	Alkbh3	99	93.684	Mus_pahari
ENSRNOG00000021678	Alkbh3	97	94.386	MGP_SPRETEiJ_G0024905	Alkbh3	99	94.386	Mus_spretus
ENSRNOG00000021678	Alkbh3	96	82.042	ENSMPUG00000006151	ALKBH3	99	82.042	Mustela_putorius_furo
ENSRNOG00000021678	Alkbh3	96	82.394	ENSMLUG00000029289	ALKBH3	99	82.394	Myotis_lucifugus
ENSRNOG00000021678	Alkbh3	96	85.866	ENSNGAG00000004591	Alkbh3	99	85.866	Nannospalax_galili
ENSRNOG00000021678	Alkbh3	98	50.000	ENSNBRG00000016311	alkbh3	97	50.000	Neolamprologus_brichardi
ENSRNOG00000021678	Alkbh3	97	85.614	ENSNLEG00000027521	ALKBH3	99	85.614	Nomascus_leucogenys
ENSRNOG00000021678	Alkbh3	71	81.429	ENSMEUG00000007604	ALKBH3	99	81.429	Notamacropus_eugenii
ENSRNOG00000021678	Alkbh3	96	82.042	ENSOPRG00000006771	ALKBH3	99	82.042	Ochotona_princeps
ENSRNOG00000021678	Alkbh3	97	82.517	ENSODEG00000017204	ALKBH3	99	82.517	Octodon_degus
ENSRNOG00000021678	Alkbh3	96	54.386	ENSONIG00000015605	alkbh3	97	54.196	Oreochromis_niloticus
ENSRNOG00000021678	Alkbh3	95	67.018	ENSOANG00000009208	ALKBH3	97	67.018	Ornithorhynchus_anatinus
ENSRNOG00000021678	Alkbh3	96	83.217	ENSOCUG00000016359	ALKBH3	99	83.217	Oryctolagus_cuniculus
ENSRNOG00000021678	Alkbh3	96	55.088	ENSORLG00000001437	alkbh3	95	55.088	Oryzias_latipes
ENSRNOG00000021678	Alkbh3	87	53.876	ENSORLG00020002409	alkbh3	96	53.876	Oryzias_latipes_hni
ENSRNOG00000021678	Alkbh3	96	54.737	ENSORLG00015016266	alkbh3	95	54.737	Oryzias_latipes_hsok
ENSRNOG00000021678	Alkbh3	96	55.088	ENSOMEG00000003835	alkbh3	95	55.088	Oryzias_melastigma
ENSRNOG00000021678	Alkbh3	99	84.536	ENSOGAG00000009107	ALKBH3	99	84.536	Otolemur_garnettii
ENSRNOG00000021678	Alkbh3	96	80.634	ENSOARG00000001123	ALKBH3	99	80.634	Ovis_aries
ENSRNOG00000021678	Alkbh3	97	86.667	ENSPPAG00000028729	ALKBH3	99	86.667	Pan_paniscus
ENSRNOG00000021678	Alkbh3	96	82.394	ENSPPRG00000005278	ALKBH3	99	82.394	Panthera_pardus
ENSRNOG00000021678	Alkbh3	96	80.634	ENSPTIG00000019393	ALKBH3	99	80.634	Panthera_tigris_altaica
ENSRNOG00000021678	Alkbh3	97	86.667	ENSPTRG00000003523	ALKBH3	99	86.667	Pan_troglodytes
ENSRNOG00000021678	Alkbh3	97	81.882	ENSPANG00000003104	ALKBH3	99	81.882	Papio_anubis
ENSRNOG00000021678	Alkbh3	95	54.514	ENSPKIG00000021815	alkbh3	98	52.612	Paramormyrops_kingsleyae
ENSRNOG00000021678	Alkbh3	77	66.376	ENSPSIG00000011933	ALKBH3	96	66.376	Pelodiscus_sinensis
ENSRNOG00000021678	Alkbh3	96	47.535	ENSPMGG00000008862	alkbh3	93	47.535	Periophthalmus_magnuspinnatus
ENSRNOG00000021678	Alkbh3	96	89.437	ENSPEMG00000019372	Alkbh3	99	89.437	Peromyscus_maniculatus_bairdii
ENSRNOG00000021678	Alkbh3	86	52.756	ENSPMAG00000001119	alkbh3	99	52.756	Petromyzon_marinus
ENSRNOG00000021678	Alkbh3	96	72.535	ENSPCIG00000021794	ALKBH3	97	72.535	Phascolarctos_cinereus
ENSRNOG00000021678	Alkbh3	96	53.333	ENSPFOG00000002705	alkbh3	95	53.333	Poecilia_formosa
ENSRNOG00000021678	Alkbh3	96	53.684	ENSPLAG00000002355	alkbh3	95	53.684	Poecilia_latipinna
ENSRNOG00000021678	Alkbh3	96	52.632	ENSPMEG00000004476	alkbh3	95	52.632	Poecilia_mexicana
ENSRNOG00000021678	Alkbh3	96	53.684	ENSPREG00000005505	alkbh3	90	53.684	Poecilia_reticulata
ENSRNOG00000021678	Alkbh3	97	84.266	ENSPPYG00000003342	ALKBH3	97	84.266	Pongo_abelii
ENSRNOG00000021678	Alkbh3	96	83.039	ENSPCAG00000002955	ALKBH3	99	83.039	Procavia_capensis
ENSRNOG00000021678	Alkbh3	97	86.316	ENSPCOG00000020139	ALKBH3	99	86.316	Propithecus_coquereli
ENSRNOG00000021678	Alkbh3	96	80.282	ENSPVAG00000011569	ALKBH3	99	80.282	Pteropus_vampyrus
ENSRNOG00000021678	Alkbh3	96	54.035	ENSPNYG00000010362	alkbh3	96	54.035	Pundamilia_nyererei
ENSRNOG00000021678	Alkbh3	99	56.997	ENSPNAG00000015943	alkbh3	99	56.997	Pygocentrus_nattereri
ENSRNOG00000021678	Alkbh3	97	84.912	ENSRBIG00000034161	ALKBH3	99	84.912	Rhinopithecus_bieti
ENSRNOG00000021678	Alkbh3	97	84.912	ENSRROG00000042173	ALKBH3	99	84.912	Rhinopithecus_roxellana
ENSRNOG00000021678	Alkbh3	97	82.639	ENSSBOG00000023947	ALKBH3	99	82.639	Saimiri_boliviensis_boliviensis
ENSRNOG00000021678	Alkbh3	96	71.831	ENSSHAG00000006189	ALKBH3	98	71.831	Sarcophilus_harrisii
ENSRNOG00000021678	Alkbh3	96	54.255	ENSSFOG00015003566	alkbh3	98	54.255	Scleropages_formosus
ENSRNOG00000021678	Alkbh3	96	53.448	ENSSMAG00000004404	alkbh3	95	53.448	Scophthalmus_maximus
ENSRNOG00000021678	Alkbh3	96	53.521	ENSSDUG00000000513	alkbh3	95	53.521	Seriola_dumerili
ENSRNOG00000021678	Alkbh3	96	53.521	ENSSLDG00000003080	alkbh3	95	53.521	Seriola_lalandi_dorsalis
ENSRNOG00000021678	Alkbh3	96	67.483	ENSSPUG00000005861	ALKBH3	99	67.483	Sphenodon_punctatus
ENSRNOG00000021678	Alkbh3	96	55.479	ENSSPAG00000020713	alkbh3	94	55.479	Stegastes_partitus
ENSRNOG00000021678	Alkbh3	96	83.099	ENSSSCG00000040937	ALKBH3	99	83.099	Sus_scrofa
ENSRNOG00000021678	Alkbh3	83	67.480	ENSTGUG00000010222	ALKBH3	99	67.480	Taeniopygia_guttata
ENSRNOG00000021678	Alkbh3	96	50.350	ENSTRUG00000021459	alkbh3	86	50.350	Takifugu_rubripes
ENSRNOG00000021678	Alkbh3	100	51.864	ENSTNIG00000010385	alkbh3	100	51.864	Tetraodon_nigroviridis
ENSRNOG00000021678	Alkbh3	97	83.158	ENSTBEG00000016697	ALKBH3	99	83.158	Tupaia_belangeri
ENSRNOG00000021678	Alkbh3	95	80.783	ENSTTRG00000005121	ALKBH3	99	80.783	Tursiops_truncatus
ENSRNOG00000021678	Alkbh3	96	78.521	ENSUAMG00000025129	ALKBH3	99	85.892	Ursus_americanus
ENSRNOG00000021678	Alkbh3	96	81.338	ENSUMAG00000015602	ALKBH3	99	81.338	Ursus_maritimus
ENSRNOG00000021678	Alkbh3	96	82.746	ENSVPAG00000000215	ALKBH3	99	82.746	Vicugna_pacos
ENSRNOG00000021678	Alkbh3	97	81.469	ENSVVUG00000017283	ALKBH3	99	81.469	Vulpes_vulpes
ENSRNOG00000021678	Alkbh3	95	54.930	ENSXETG00000022230	alkbh3	99	54.930	Xenopus_tropicalis
ENSRNOG00000021678	Alkbh3	56	59.394	ENSXCOG00000000737	alkbh3	65	59.394	Xiphophorus_couchianus
ENSRNOG00000021678	Alkbh3	96	53.357	ENSXMAG00000013123	alkbh3	95	53.357	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004519	endonuclease activity	-	ISO	Function
GO:0004527	exonuclease activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006281	DNA repair	-	ISO	Process
GO:0006281	DNA repair	-	ISS	Process
GO:0006307	DNA dealkylation involved in DNA repair	21873635.	IBA	Process
GO:0006307	DNA dealkylation involved in DNA repair	-	ISO	Process
GO:0006307	DNA dealkylation involved in DNA repair	-	ISS	Process
GO:0008198	ferrous iron binding	21873635.	IBA	Function
GO:0008198	ferrous iron binding	-	ISO	Function
GO:0008198	ferrous iron binding	-	ISS	Function
GO:0008283	cell proliferation	-	ISO	Process
GO:0008283	cell proliferation	-	ISS	Process
GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	-	ISO	Function
GO:0035552	oxidative single-stranded DNA demethylation	21873635.	IBA	Process
GO:0035552	oxidative single-stranded DNA demethylation	-	ISO	Process
GO:0035552	oxidative single-stranded DNA demethylation	-	ISS	Process
GO:0035553	oxidative single-stranded RNA demethylation	21873635.	IBA	Process
GO:0035553	oxidative single-stranded RNA demethylation	-	ISO	Process
GO:0043734	DNA-N1-methyladenine dioxygenase activity	21873635.	IBA	Function
GO:0043734	DNA-N1-methyladenine dioxygenase activity	-	ISO	Function
GO:0043734	DNA-N1-methyladenine dioxygenase activity	-	ISS	Function
GO:0051747	cytosine C-5 DNA demethylase activity	-	IEA	Function
GO:0051747	cytosine C-5 DNA demethylase activity	-	ISO	Function
GO:1990930	RNA N1-methyladenosine dioxygenase activity	21873635.	IBA	Function
GO:1990930	RNA N1-methyladenosine dioxygenase activity	-	ISO	Function
GO:1990930	RNA N1-methyladenosine dioxygenase activity	-	ISS	Function