EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000021890 (Gene tree)
Gene ID: 291996
Gene Symbol: Nob1
Alias: LOC291996|MGC156557|Nob1p
Full Name: NIN1 (RPN12) binding protein 1 homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 12459 bases
Position: chr19:38397466-38409924
Accession: 735222
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000031905	NOB1_Zn_bind	PF08772.11	2.6e-31	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000034386	-	1529	-	ENSRNOP00000031905	410 (aa)	-	Q6VEU1

Gene Model

Click here to download ENSRNOG00000021890's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000021890's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000021890	Nob1	100	88.620	ENSG00000141101	NOB1	98	93.846	Homo_sapiens
ENSRNOG00000021890	Nob1	85	63.533	ENSAPOG00000008241	nob1	94	63.533	Acanthochromis_polyacanthus
ENSRNOG00000021890	Nob1	100	85.817	ENSAMEG00000006706	NOB1	99	85.817	Ailuropoda_melanoleuca
ENSRNOG00000021890	Nob1	99	62.381	ENSACIG00000001503	nob1	99	64.048	Amphilophus_citrinellus
ENSRNOG00000021890	Nob1	100	65.133	ENSAOCG00000006533	nob1	100	64.891	Amphiprion_ocellaris
ENSRNOG00000021890	Nob1	100	65.617	ENSAPEG00000000032	-	100	65.617	Amphiprion_percula
ENSRNOG00000021890	Nob1	100	65.617	ENSAPEG00000000029	nob1	100	65.617	Amphiprion_percula
ENSRNOG00000021890	Nob1	100	64.891	ENSATEG00000014585	nob1	100	64.563	Anabas_testudineus
ENSRNOG00000021890	Nob1	99	66.745	ENSACAG00000003697	NOB1	87	67.303	Anolis_carolinensis
ENSRNOG00000021890	Nob1	100	87.864	ENSANAG00000036611	NOB1	100	87.864	Aotus_nancymaae
ENSRNOG00000021890	Nob1	99	62.676	ENSACLG00000024897	nob1	99	62.676	Astatotilapia_calliptera
ENSRNOG00000021890	Nob1	95	56.808	ENSAMXG00000003642	nob1	100	58.178	Astyanax_mexicanus
ENSRNOG00000021890	Nob1	100	87.409	ENSBTAG00000020633	NOB1	100	87.409	Bos_taurus
ENSRNOG00000021890	Nob1	100	88.592	ENSCJAG00000015230	NOB1	100	88.592	Callithrix_jacchus
ENSRNOG00000021890	Nob1	100	85.990	ENSCAFG00000020251	NOB1	100	86.473	Canis_familiaris
ENSRNOG00000021890	Nob1	100	85.990	ENSCAFG00020020297	NOB1	100	86.473	Canis_lupus_dingo
ENSRNOG00000021890	Nob1	100	86.683	ENSCHIG00000027022	NOB1	100	86.683	Capra_hircus
ENSRNOG00000021890	Nob1	100	86.199	ENSTSYG00000003084	NOB1	100	87.167	Carlito_syrichta
ENSRNOG00000021890	Nob1	84	85.174	ENSCAPG00000015542	NOB1	100	85.174	Cavia_aperea
ENSRNOG00000021890	Nob1	100	86.341	ENSCPOG00000022538	NOB1	100	86.341	Cavia_porcellus
ENSRNOG00000021890	Nob1	100	88.675	ENSCCAG00000023773	NOB1	100	88.434	Cebus_capucinus
ENSRNOG00000021890	Nob1	100	88.406	ENSCATG00000039487	NOB1	100	88.620	Cercocebus_atys
ENSRNOG00000021890	Nob1	84	80.233	ENSCLAG00000005926	NOB1	100	81.686	Chinchilla_lanigera
ENSRNOG00000021890	Nob1	100	87.923	ENSCSAG00000004158	NOB1	100	88.136	Chlorocebus_sabaeus
ENSRNOG00000021890	Nob1	100	77.859	ENSCHOG00000011047	NOB1	100	77.129	Choloepus_hoffmanni
ENSRNOG00000021890	Nob1	100	72.000	ENSCPBG00000027035	NOB1	93	72.000	Chrysemys_picta_bellii
ENSRNOG00000021890	Nob1	99	49.165	ENSCING00000023441	-	99	49.029	Ciona_intestinalis
ENSRNOG00000021890	Nob1	99	47.608	ENSCSAVG00000009081	-	99	47.330	Ciona_savignyi
ENSRNOG00000021890	Nob1	100	91.220	ENSCGRG00001009255	Nob1	95	91.220	Cricetulus_griseus_chok1gshd
ENSRNOG00000021890	Nob1	100	91.220	ENSCGRG00000010869	Nob1	100	91.220	Cricetulus_griseus_crigri
ENSRNOG00000021890	Nob1	86	62.567	ENSCSEG00000019657	nob1	91	62.069	Cynoglossus_semilaevis
ENSRNOG00000021890	Nob1	99	61.468	ENSDARG00000016080	nob1	99	61.927	Danio_rerio
ENSRNOG00000021890	Nob1	100	86.618	ENSDNOG00000041643	NOB1	100	86.375	Dasypus_novemcinctus
ENSRNOG00000021890	Nob1	100	87.317	ENSDORG00000000483	Nob1	100	87.561	Dipodomys_ordii
ENSRNOG00000021890	Nob1	85	42.308	FBgn0030177	CG2972	77	43.541	Drosophila_melanogaster
ENSRNOG00000021890	Nob1	59	75.207	ENSETEG00000000011	-	58	75.207	Echinops_telfairi
ENSRNOG00000021890	Nob1	99	46.078	ENSEBUG00000004464	nob1	98	45.588	Eptatretus_burgeri
ENSRNOG00000021890	Nob1	100	87.500	ENSEASG00005021356	NOB1	84	87.500	Equus_asinus_asinus
ENSRNOG00000021890	Nob1	100	87.019	ENSECAG00000023748	NOB1	81	87.019	Equus_caballus
ENSRNOG00000021890	Nob1	68	70.922	ENSEEUG00000014384	NOB1	66	70.567	Erinaceus_europaeus
ENSRNOG00000021890	Nob1	99	61.048	ENSELUG00000016199	nob1	94	61.959	Esox_lucius
ENSRNOG00000021890	Nob1	100	88.647	ENSFCAG00000002958	NOB1	100	88.647	Felis_catus
ENSRNOG00000021890	Nob1	50	74.074	ENSFALG00000002747	NOB1	86	74.194	Ficedula_albicollis
ENSRNOG00000021890	Nob1	100	84.146	ENSFDAG00000009239	NOB1	100	84.634	Fukomys_damarensis
ENSRNOG00000021890	Nob1	61	57.414	ENSFHEG00000007657	nob1	53	67.633	Fundulus_heteroclitus
ENSRNOG00000021890	Nob1	99	64.938	ENSGMOG00000010638	nob1	98	65.432	Gadus_morhua
ENSRNOG00000021890	Nob1	100	61.717	ENSGALG00000000693	NOB1	100	64.085	Gallus_gallus
ENSRNOG00000021890	Nob1	100	55.580	ENSGAFG00000006104	nob1	100	56.674	Gambusia_affinis
ENSRNOG00000021890	Nob1	99	63.107	ENSGACG00000017552	nob1	99	63.107	Gasterosteus_aculeatus
ENSRNOG00000021890	Nob1	100	71.529	ENSGAGG00000003902	NOB1	100	70.353	Gopherus_agassizii
ENSRNOG00000021890	Nob1	100	88.620	ENSGGOG00000025456	NOB1	100	88.620	Gorilla_gorilla
ENSRNOG00000021890	Nob1	99	66.015	ENSHBUG00000002580	nob1	99	66.015	Haplochromis_burtoni
ENSRNOG00000021890	Nob1	100	85.990	ENSHGLG00000014260	NOB1	100	85.266	Heterocephalus_glaber_female
ENSRNOG00000021890	Nob1	100	87.561	ENSHGLG00100013978	NOB1	100	87.561	Heterocephalus_glaber_male
ENSRNOG00000021890	Nob1	99	61.538	ENSHCOG00000006699	nob1	99	61.298	Hippocampus_comes
ENSRNOG00000021890	Nob1	99	54.025	ENSIPUG00000007579	nob1	99	54.237	Ictalurus_punctatus
ENSRNOG00000021890	Nob1	100	87.317	ENSSTOG00000001204	NOB1	100	87.561	Ictidomys_tridecemlineatus
ENSRNOG00000021890	Nob1	100	87.317	ENSJJAG00000015543	Nob1	100	87.317	Jaculus_jaculus
ENSRNOG00000021890	Nob1	99	64.891	ENSKMAG00000018220	nob1	99	64.891	Kryptolebias_marmoratus
ENSRNOG00000021890	Nob1	100	67.150	ENSLBEG00000026375	nob1	100	67.150	Labrus_bergylta
ENSRNOG00000021890	Nob1	100	65.826	ENSLACG00000006973	NOB1	98	66.055	Latimeria_chalumnae
ENSRNOG00000021890	Nob1	99	59.193	ENSLOCG00000001411	nob1	99	60.000	Lepisosteus_oculatus
ENSRNOG00000021890	Nob1	100	87.229	ENSLAFG00000008978	NOB1	100	87.229	Loxodonta_africana
ENSRNOG00000021890	Nob1	100	88.350	ENSMFAG00000030131	NOB1	100	88.350	Macaca_fascicularis
ENSRNOG00000021890	Nob1	100	88.164	ENSMMUG00000006506	NOB1	100	88.378	Macaca_mulatta
ENSRNOG00000021890	Nob1	100	88.647	ENSMNEG00000028829	NOB1	100	81.840	Macaca_nemestrina
ENSRNOG00000021890	Nob1	100	89.130	ENSMLEG00000032913	NOB1	100	89.346	Mandrillus_leucophaeus
ENSRNOG00000021890	Nob1	99	65.111	ENSMZEG00005028346	nob1	99	65.111	Maylandia_zebra
ENSRNOG00000021890	Nob1	68	57.823	ENSMZEG00005003827	-	89	57.823	Maylandia_zebra
ENSRNOG00000021890	Nob1	63	70.787	ENSMGAG00000008675	NOB1	99	71.161	Meleagris_gallopavo
ENSRNOG00000021890	Nob1	100	90.000	ENSMAUG00000013554	Nob1	100	90.000	Mesocricetus_auratus
ENSRNOG00000021890	Nob1	100	87.893	ENSMICG00000012123	NOB1	100	86.683	Microcebus_murinus
ENSRNOG00000021890	Nob1	100	90.732	ENSMOCG00000010370	Nob1	100	90.000	Microtus_ochrogaster
ENSRNOG00000021890	Nob1	100	66.828	ENSMMOG00000002120	nob1	100	66.828	Mola_mola
ENSRNOG00000021890	Nob1	100	76.485	ENSMODG00000002677	NOB1	100	76.247	Monodelphis_domestica
ENSRNOG00000021890	Nob1	99	64.720	ENSMALG00000014580	nob1	100	64.720	Monopterus_albus
ENSRNOG00000021890	Nob1	100	93.659	MGP_CAROLIEiJ_G0031536	Nob1	98	92.439	Mus_caroli
ENSRNOG00000021890	Nob1	100	91.951	ENSMUSG00000003848	Nob1	100	91.951	Mus_musculus
ENSRNOG00000021890	Nob1	100	94.390	MGP_PahariEiJ_G0023136	Nob1	100	93.659	Mus_pahari
ENSRNOG00000021890	Nob1	100	93.415	MGP_SPRETEiJ_G0032654	Nob1	98	92.683	Mus_spretus
ENSRNOG00000021890	Nob1	100	87.440	ENSMPUG00000007483	NOB1	91	87.681	Mustela_putorius_furo
ENSRNOG00000021890	Nob1	100	86.341	ENSMLUG00000006667	NOB1	100	86.341	Myotis_lucifugus
ENSRNOG00000021890	Nob1	100	90.732	ENSNGAG00000008627	Nob1	100	90.732	Nannospalax_galili
ENSRNOG00000021890	Nob1	100	89.614	ENSNLEG00000005572	NOB1	100	89.588	Nomascus_leucogenys
ENSRNOG00000021890	Nob1	78	84.969	ENSOPRG00000006721	NOB1	100	84.615	Ochotona_princeps
ENSRNOG00000021890	Nob1	100	83.902	ENSODEG00000014376	NOB1	100	83.902	Octodon_degus
ENSRNOG00000021890	Nob1	99	60.682	ENSONIG00000003319	nob1	99	61.591	Oreochromis_niloticus
ENSRNOG00000021890	Nob1	84	83.908	ENSOCUG00000004400	NOB1	100	83.908	Oryctolagus_cuniculus
ENSRNOG00000021890	Nob1	100	64.165	ENSORLG00000018862	nob1	100	64.165	Oryzias_latipes
ENSRNOG00000021890	Nob1	100	64.649	ENSORLG00020014687	nob1	100	64.649	Oryzias_latipes_hni
ENSRNOG00000021890	Nob1	100	63.680	ENSORLG00015012156	nob1	100	63.680	Oryzias_latipes_hsok
ENSRNOG00000021890	Nob1	100	58.043	ENSOMEG00000022722	nob1	100	58.913	Oryzias_melastigma
ENSRNOG00000021890	Nob1	100	81.068	ENSOGAG00000004590	NOB1	100	80.825	Otolemur_garnettii
ENSRNOG00000021890	Nob1	100	86.199	ENSOARG00000003606	NOB1	100	86.199	Ovis_aries
ENSRNOG00000021890	Nob1	100	88.164	ENSPPAG00000040257	NOB1	100	88.378	Pan_paniscus
ENSRNOG00000021890	Nob1	98	81.095	ENSPPAG00000003317	-	100	80.846	Pan_paniscus
ENSRNOG00000021890	Nob1	100	88.164	ENSPPRG00000016949	NOB1	100	88.406	Panthera_pardus
ENSRNOG00000021890	Nob1	100	88.164	ENSPTIG00000011234	NOB1	100	88.406	Panthera_tigris_altaica
ENSRNOG00000021890	Nob1	100	88.378	ENSPTRG00000008285	NOB1	100	88.378	Pan_troglodytes
ENSRNOG00000021890	Nob1	100	88.862	ENSPANG00000015858	NOB1	100	88.862	Papio_anubis
ENSRNOG00000021890	Nob1	99	65.311	ENSPKIG00000020293	nob1	99	65.311	Paramormyrops_kingsleyae
ENSRNOG00000021890	Nob1	95	70.050	ENSPSIG00000012477	NOB1	98	67.978	Pelodiscus_sinensis
ENSRNOG00000021890	Nob1	99	62.774	ENSPMGG00000023476	nob1	100	63.747	Periophthalmus_magnuspinnatus
ENSRNOG00000021890	Nob1	100	91.971	ENSPEMG00000010995	Nob1	100	91.241	Peromyscus_maniculatus_bairdii
ENSRNOG00000021890	Nob1	50	85.784	ENSPCIG00000007274	-	81	85.922	Phascolarctos_cinereus
ENSRNOG00000021890	Nob1	84	59.280	ENSPFOG00000000027	nob1	100	59.280	Poecilia_formosa
ENSRNOG00000021890	Nob1	65	61.654	ENSPLAG00000011546	nob1	94	61.654	Poecilia_latipinna
ENSRNOG00000021890	Nob1	100	59.709	ENSPMEG00000023435	nob1	100	59.709	Poecilia_mexicana
ENSRNOG00000021890	Nob1	99	57.112	ENSPREG00000007675	nob1	100	57.112	Poecilia_reticulata
ENSRNOG00000021890	Nob1	100	88.835	ENSPPYG00000007509	NOB1	100	88.835	Pongo_abelii
ENSRNOG00000021890	Nob1	100	82.494	ENSPCAG00000001527	NOB1	100	82.734	Procavia_capensis
ENSRNOG00000021890	Nob1	100	88.780	ENSPCOG00000025515	NOB1	100	88.780	Propithecus_coquereli
ENSRNOG00000021890	Nob1	78	63.077	ENSPVAG00000013330	NOB1	78	62.037	Pteropus_vampyrus
ENSRNOG00000021890	Nob1	99	63.882	ENSPNYG00000018449	nob1	99	63.882	Pundamilia_nyererei
ENSRNOG00000021890	Nob1	99	56.818	ENSPNAG00000004244	nob1	99	58.864	Pygocentrus_nattereri
ENSRNOG00000021890	Nob1	100	89.346	ENSRBIG00000019599	NOB1	100	89.346	Rhinopithecus_bieti
ENSRNOG00000021890	Nob1	100	89.346	ENSRROG00000033419	NOB1	100	89.346	Rhinopithecus_roxellana
ENSRNOG00000021890	Nob1	84	87.320	ENSSBOG00000029042	NOB1	89	87.320	Saimiri_boliviensis_boliviensis
ENSRNOG00000021890	Nob1	100	77.512	ENSSHAG00000015387	NOB1	100	78.230	Sarcophilus_harrisii
ENSRNOG00000021890	Nob1	100	62.613	ENSSFOG00015008503	nob1	100	65.376	Scleropages_formosus
ENSRNOG00000021890	Nob1	100	64.029	ENSSMAG00000003064	nob1	100	63.549	Scophthalmus_maximus
ENSRNOG00000021890	Nob1	100	63.221	ENSSDUG00000007307	nob1	100	63.221	Seriola_dumerili
ENSRNOG00000021890	Nob1	70	69.832	ENSSLDG00000011459	-	96	69.832	Seriola_lalandi_dorsalis
ENSRNOG00000021890	Nob1	94	65.140	ENSSPUG00000005621	NOB1	99	70.690	Sphenodon_punctatus
ENSRNOG00000021890	Nob1	100	64.806	ENSSPAG00000022362	nob1	100	64.806	Stegastes_partitus
ENSRNOG00000021890	Nob1	100	87.167	ENSSSCG00000002753	NOB1	100	87.167	Sus_scrofa
ENSRNOG00000021890	Nob1	50	74.419	ENSTGUG00000008124	NOB1	93	74.419	Taeniopygia_guttata
ENSRNOG00000021890	Nob1	99	62.529	ENSTRUG00000023145	nob1	100	62.529	Takifugu_rubripes
ENSRNOG00000021890	Nob1	99	62.529	ENSTRUG00000004780	nob1	100	62.529	Takifugu_rubripes
ENSRNOG00000021890	Nob1	99	63.133	ENSTNIG00000002552	nob1	100	63.133	Tetraodon_nigroviridis
ENSRNOG00000021890	Nob1	59	84.082	ENSTBEG00000000690	NOB1	52	84.490	Tupaia_belangeri
ENSRNOG00000021890	Nob1	61	85.547	ENSUAMG00000028135	NOB1	100	85.938	Ursus_americanus
ENSRNOG00000021890	Nob1	100	87.198	ENSUMAG00000018658	NOB1	95	87.440	Ursus_maritimus
ENSRNOG00000021890	Nob1	100	85.749	ENSVVUG00000017271	NOB1	100	86.232	Vulpes_vulpes
ENSRNOG00000021890	Nob1	100	61.149	ENSXETG00000017874	nob1	99	60.959	Xenopus_tropicalis
ENSRNOG00000021890	Nob1	84	59.942	ENSXCOG00000009734	nob1	100	59.366	Xiphophorus_couchianus
ENSRNOG00000021890	Nob1	100	60.238	ENSXMAG00000017371	nob1	100	59.762	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000469	cleavage involved in rRNA processing	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0004521	endoribonuclease activity	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	IEA	Component
GO:0007601	visual perception	-	IEA	Process
GO:0007601	visual perception	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process