EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000022395 (Gene tree)
Gene ID: 303774
Gene Symbol: Tnrc6c
Alias: LOC303774|RGD1310027
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 49917 bases
Position: chr10:106712127-106762043
Accession: 1310027
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000049430	Ago_hook	PF10427.9	1.1e-23	1	1
ENSRNOP00000049430	RRM_1	PF00076.22	0.00022	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000040629	-	5794	XM_008768441	ENSRNOP00000049430	1683 (aa)	XP_008766663	D3ZRA6

Gene Model

Click here to download ENSRNOG00000022395's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000022395's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000022395	Tnrc6c	93	35.914	ENSRNOG00000024907	Tnrc6b	81	35.373
ENSRNOG00000022395	Tnrc6c	98	43.169	ENSRNOG00000024737	Tnrc6a	84	42.565

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000022395	Tnrc6c	100	90.366	ENSG00000078687	TNRC6C	100	90.426	Homo_sapiens
ENSRNOG00000022395	Tnrc6c	80	54.740	ENSAPOG00000019749	tnrc6c1	92	49.715	Acanthochromis_polyacanthus
ENSRNOG00000022395	Tnrc6c	100	85.486	ENSAMEG00000013756	TNRC6C	96	85.657	Ailuropoda_melanoleuca
ENSRNOG00000022395	Tnrc6c	91	50.623	ENSACIG00000008075	tnrc6c1	92	52.720	Amphilophus_citrinellus
ENSRNOG00000022395	Tnrc6c	77	68.871	ENSAOCG00000023968	tnrc6c1	92	50.199	Amphiprion_ocellaris
ENSRNOG00000022395	Tnrc6c	80	54.211	ENSAPEG00000009020	tnrc6c1	92	50.142	Amphiprion_percula
ENSRNOG00000022395	Tnrc6c	100	82.427	ENSAPLG00000005456	TNRC6C	90	82.104	Anas_platyrhynchos
ENSRNOG00000022395	Tnrc6c	100	83.064	ENSACAG00000016198	TNRC6C	88	82.717	Anolis_carolinensis
ENSRNOG00000022395	Tnrc6c	100	89.829	ENSANAG00000021554	TNRC6C	100	90.124	Aotus_nancymaae
ENSRNOG00000022395	Tnrc6c	98	46.979	ENSACLG00000000424	tnrc6c1	78	51.513	Astatotilapia_calliptera
ENSRNOG00000022395	Tnrc6c	100	86.879	ENSBTAG00000018658	TNRC6C	100	87.648	Bos_taurus
ENSRNOG00000022395	Tnrc6c	100	90.065	ENSCJAG00000019431	TNRC6C	100	90.065	Callithrix_jacchus
ENSRNOG00000022395	Tnrc6c	100	87.623	ENSCAFG00000005224	TNRC6C	89	87.739	Canis_familiaris
ENSRNOG00000022395	Tnrc6c	100	89.282	ENSCAFG00020006661	TNRC6C	100	88.639	Canis_lupus_dingo
ENSRNOG00000022395	Tnrc6c	100	86.442	ENSCHIG00000026004	TNRC6C	100	85.462	Capra_hircus
ENSRNOG00000022395	Tnrc6c	100	89.346	ENSTSYG00000005403	TNRC6C	100	89.288	Carlito_syrichta
ENSRNOG00000022395	Tnrc6c	100	84.226	ENSCAPG00000007307	TNRC6C	89	84.375	Cavia_aperea
ENSRNOG00000022395	Tnrc6c	100	89.396	ENSCPOG00000000467	TNRC6C	97	89.692	Cavia_porcellus
ENSRNOG00000022395	Tnrc6c	100	90.538	ENSCCAG00000030524	TNRC6C	100	90.538	Cebus_capucinus
ENSRNOG00000022395	Tnrc6c	100	90.361	ENSCATG00000033135	TNRC6C	100	90.361	Cercocebus_atys
ENSRNOG00000022395	Tnrc6c	100	91.647	ENSCLAG00000011139	TNRC6C	89	91.588	Chinchilla_lanigera
ENSRNOG00000022395	Tnrc6c	100	88.419	ENSCSAG00000005167	TNRC6C	89	88.419	Chlorocebus_sabaeus
ENSRNOG00000022395	Tnrc6c	71	90.431	ENSCHOG00000000088	TNRC6C	68	89.694	Choloepus_hoffmanni
ENSRNOG00000022395	Tnrc6c	100	85.579	ENSCPBG00000027960	TNRC6C	100	85.343	Chrysemys_picta_bellii
ENSRNOG00000022395	Tnrc6c	100	90.183	ENSCANG00000041771	TNRC6C	100	90.183	Colobus_angolensis_palliatus
ENSRNOG00000022395	Tnrc6c	100	94.563	ENSCGRG00001022686	Tnrc6c	100	93.381	Cricetulus_griseus_chok1gshd
ENSRNOG00000022395	Tnrc6c	100	95.012	ENSCGRG00000018041	Tnrc6c	100	93.381	Cricetulus_griseus_crigri
ENSRNOG00000022395	Tnrc6c	80	52.547	ENSCSEG00000012744	tnrc6c1	88	49.114	Cynoglossus_semilaevis
ENSRNOG00000022395	Tnrc6c	98	52.644	ENSDARG00000076847	tnrc6c1	81	60.360	Danio_rerio
ENSRNOG00000022395	Tnrc6c	100	86.308	ENSDNOG00000003247	TNRC6C	91	86.308	Dasypus_novemcinctus
ENSRNOG00000022395	Tnrc6c	100	86.903	ENSDORG00000004558	Tnrc6c	100	86.726	Dipodomys_ordii
ENSRNOG00000022395	Tnrc6c	89	81.826	ENSETEG00000005527	TNRC6C	87	81.913	Echinops_telfairi
ENSRNOG00000022395	Tnrc6c	100	89.402	ENSEASG00005004799	TNRC6C	100	89.639	Equus_asinus_asinus
ENSRNOG00000022395	Tnrc6c	100	89.402	ENSECAG00000012486	TNRC6C	90	89.639	Equus_caballus
ENSRNOG00000022395	Tnrc6c	96	87.661	ENSEEUG00000010008	TNRC6C	93	86.740	Erinaceus_europaeus
ENSRNOG00000022395	Tnrc6c	100	87.729	ENSFCAG00000028358	TNRC6C	100	87.847	Felis_catus
ENSRNOG00000022395	Tnrc6c	100	82.200	ENSFALG00000000848	TNRC6C	100	82.143	Ficedula_albicollis
ENSRNOG00000022395	Tnrc6c	100	90.640	ENSFDAG00000010368	TNRC6C	97	90.521	Fukomys_damarensis
ENSRNOG00000022395	Tnrc6c	80	51.595	ENSFHEG00000002936	tnrc6c1	92	47.741	Fundulus_heteroclitus
ENSRNOG00000022395	Tnrc6c	100	86.264	ENSGALG00000001725	TNRC6C	100	85.968	Gallus_gallus
ENSRNOG00000022395	Tnrc6c	97	50.057	ENSGAFG00000019019	tnrc6c1	97	49.458	Gambusia_affinis
ENSRNOG00000022395	Tnrc6c	91	50.314	ENSGACG00000012320	tnrc6c1	86	49.238	Gasterosteus_aculeatus
ENSRNOG00000022395	Tnrc6c	100	85.174	ENSGAGG00000022043	TNRC6C	95	84.820	Gopherus_agassizii
ENSRNOG00000022395	Tnrc6c	100	89.775	ENSGGOG00000011304	TNRC6C	100	89.657	Gorilla_gorilla
ENSRNOG00000022395	Tnrc6c	94	47.528	ENSHBUG00000010846	tnrc6c1	83	51.928	Haplochromis_burtoni
ENSRNOG00000022395	Tnrc6c	100	90.877	ENSHGLG00000004809	TNRC6C	89	90.818	Heterocephalus_glaber_female
ENSRNOG00000022395	Tnrc6c	100	90.153	ENSHGLG00100012597	TNRC6C	89	90.153	Heterocephalus_glaber_male
ENSRNOG00000022395	Tnrc6c	100	52.266	ENSIPUG00000000818	tnrc6c1	75	58.526	Ictalurus_punctatus
ENSRNOG00000022395	Tnrc6c	100	90.178	ENSSTOG00000009101	TNRC6C	97	90.296	Ictidomys_tridecemlineatus
ENSRNOG00000022395	Tnrc6c	100	91.430	ENSJJAG00000017055	Tnrc6c	89	91.312	Jaculus_jaculus
ENSRNOG00000022395	Tnrc6c	94	50.155	ENSKMAG00000021023	tnrc6c1	97	50.506	Kryptolebias_marmoratus
ENSRNOG00000022395	Tnrc6c	100	74.267	ENSLACG00000015283	TNRC6C	97	74.443	Latimeria_chalumnae
ENSRNOG00000022395	Tnrc6c	99	56.194	ENSLOCG00000013377	tnrc6c1	87	58.006	Lepisosteus_oculatus
ENSRNOG00000022395	Tnrc6c	100	89.151	ENSLAFG00000011122	TNRC6C	96	82.751	Loxodonta_africana
ENSRNOG00000022395	Tnrc6c	100	90.420	ENSMFAG00000043943	TNRC6C	100	90.420	Macaca_fascicularis
ENSRNOG00000022395	Tnrc6c	100	90.420	ENSMMUG00000011924	TNRC6C	100	90.420	Macaca_mulatta
ENSRNOG00000022395	Tnrc6c	100	90.361	ENSMNEG00000030405	TNRC6C	100	90.361	Macaca_nemestrina
ENSRNOG00000022395	Tnrc6c	100	90.420	ENSMLEG00000033436	TNRC6C	100	90.420	Mandrillus_leucophaeus
ENSRNOG00000022395	Tnrc6c	80	53.138	ENSMAMG00000023613	tnrc6c1	97	49.914	Mastacembelus_armatus
ENSRNOG00000022395	Tnrc6c	98	46.979	ENSMZEG00005010920	tnrc6c1	78	51.513	Maylandia_zebra
ENSRNOG00000022395	Tnrc6c	100	76.711	ENSMGAG00000003906	TNRC6C	90	76.481	Meleagris_gallopavo
ENSRNOG00000022395	Tnrc6c	100	93.913	ENSMAUG00000021618	Tnrc6c	100	93.735	Mesocricetus_auratus
ENSRNOG00000022395	Tnrc6c	100	91.366	ENSMICG00000003952	TNRC6C	100	91.307	Microcebus_murinus
ENSRNOG00000022395	Tnrc6c	100	96.200	ENSMOCG00000015879	Tnrc6c	97	96.200	Microtus_ochrogaster
ENSRNOG00000022395	Tnrc6c	78	55.090	ENSMMOG00000005203	tnrc6c1	97	50.466	Mola_mola
ENSRNOG00000022395	Tnrc6c	100	85.041	ENSMODG00000001785	TNRC6C	89	84.688	Monodelphis_domestica
ENSRNOG00000022395	Tnrc6c	100	97.743	MGP_CAROLIEiJ_G0017465	Tnrc6c	97	97.743	Mus_caroli
ENSRNOG00000022395	Tnrc6c	100	97.447	ENSMUSG00000025571	Tnrc6c	97	97.447	Mus_musculus
ENSRNOG00000022395	Tnrc6c	100	97.743	MGP_PahariEiJ_G0018593	Tnrc6c	97	97.743	Mus_pahari
ENSRNOG00000022395	Tnrc6c	100	97.506	MGP_SPRETEiJ_G0018309	Tnrc6c	97	97.506	Mus_spretus
ENSRNOG00000022395	Tnrc6c	100	85.599	ENSMPUG00000013348	TNRC6C	88	85.599	Mustela_putorius_furo
ENSRNOG00000022395	Tnrc6c	100	82.356	ENSMLUG00000014431	TNRC6C	88	82.126	Myotis_lucifugus
ENSRNOG00000022395	Tnrc6c	100	93.203	ENSNGAG00000012203	Tnrc6c	89	93.144	Nannospalax_galili
ENSRNOG00000022395	Tnrc6c	98	47.497	ENSNBRG00000005344	tnrc6c1	75	54.250	Neolamprologus_brichardi
ENSRNOG00000022395	Tnrc6c	100	85.533	ENSNLEG00000000047	TNRC6C	89	85.360	Nomascus_leucogenys
ENSRNOG00000022395	Tnrc6c	97	79.164	ENSMEUG00000005104	TNRC6C	97	78.982	Notamacropus_eugenii
ENSRNOG00000022395	Tnrc6c	100	90.936	ENSODEG00000012499	TNRC6C	100	91.114	Octodon_degus
ENSRNOG00000022395	Tnrc6c	94	49.818	ENSONIG00000002210	tnrc6c1	91	52.589	Oreochromis_niloticus
ENSRNOG00000022395	Tnrc6c	99	63.429	ENSOANG00000009758	-	85	65.300	Ornithorhynchus_anatinus
ENSRNOG00000022395	Tnrc6c	84	80.338	ENSOCUG00000006122	TNRC6C	83	71.897	Oryctolagus_cuniculus
ENSRNOG00000022395	Tnrc6c	91	49.201	ENSORLG00000009837	tnrc6c1	100	67.286	Oryzias_latipes
ENSRNOG00000022395	Tnrc6c	91	49.201	ENSORLG00020016510	tnrc6c1	79	54.086	Oryzias_latipes_hni
ENSRNOG00000022395	Tnrc6c	72	44.035	ENSORLG00015000171	tnrc6c1	94	43.206	Oryzias_latipes_hsok
ENSRNOG00000022395	Tnrc6c	91	49.541	ENSOMEG00000000357	tnrc6c1	91	48.686	Oryzias_melastigma
ENSRNOG00000022395	Tnrc6c	100	88.188	ENSOGAG00000007197	TNRC6C	100	88.361	Otolemur_garnettii
ENSRNOG00000022395	Tnrc6c	96	82.374	ENSOARG00000006041	TNRC6C	87	82.529	Ovis_aries
ENSRNOG00000022395	Tnrc6c	100	90.302	ENSPPAG00000027160	TNRC6C	100	90.302	Pan_paniscus
ENSRNOG00000022395	Tnrc6c	100	87.906	ENSPPRG00000018881	TNRC6C	100	88.024	Panthera_pardus
ENSRNOG00000022395	Tnrc6c	90	81.304	ENSPTIG00000008791	TNRC6C	69	74.769	Panthera_tigris_altaica
ENSRNOG00000022395	Tnrc6c	100	90.302	ENSPTRG00000009699	TNRC6C	100	90.302	Pan_troglodytes
ENSRNOG00000022395	Tnrc6c	100	90.581	ENSPANG00000019994	TNRC6C	100	90.581	Papio_anubis
ENSRNOG00000022395	Tnrc6c	93	61.823	ENSPKIG00000005428	tnrc6c1	98	50.801	Paramormyrops_kingsleyae
ENSRNOG00000022395	Tnrc6c	100	83.688	ENSPSIG00000018069	TNRC6C	97	83.392	Pelodiscus_sinensis
ENSRNOG00000022395	Tnrc6c	65	54.624	ENSPMGG00000022911	tnrc6c1	97	63.563	Periophthalmus_magnuspinnatus
ENSRNOG00000022395	Tnrc6c	100	95.095	ENSPEMG00000009785	Tnrc6c	100	92.494	Peromyscus_maniculatus_bairdii
ENSRNOG00000022395	Tnrc6c	58	82.528	ENSPCIG00000017421	-	99	82.323	Phascolarctos_cinereus
ENSRNOG00000022395	Tnrc6c	97	50.029	ENSPFOG00000012560	tnrc6c1	97	54.193	Poecilia_formosa
ENSRNOG00000022395	Tnrc6c	97	50.143	ENSPLAG00000021055	tnrc6c1	97	49.544	Poecilia_latipinna
ENSRNOG00000022395	Tnrc6c	100	88.535	ENSPPYG00000008679	TNRC6C	88	88.535	Pongo_abelii
ENSRNOG00000022395	Tnrc6c	93	92.654	ENSPCAG00000012510	TNRC6C	91	92.654	Procavia_capensis
ENSRNOG00000022395	Tnrc6c	100	91.662	ENSPCOG00000021451	TNRC6C	100	91.721	Propithecus_coquereli
ENSRNOG00000022395	Tnrc6c	96	89.831	ENSPVAG00000002008	TNRC6C	93	89.831	Pteropus_vampyrus
ENSRNOG00000022395	Tnrc6c	98	46.697	ENSPNYG00000014477	tnrc6c1	84	51.682	Pundamilia_nyererei
ENSRNOG00000022395	Tnrc6c	100	90.302	ENSRBIG00000027777	TNRC6C	100	90.242	Rhinopithecus_bieti
ENSRNOG00000022395	Tnrc6c	100	90.361	ENSRROG00000042912	TNRC6C	100	90.302	Rhinopithecus_roxellana
ENSRNOG00000022395	Tnrc6c	100	87.956	ENSSBOG00000023981	TNRC6C	100	87.956	Saimiri_boliviensis_boliviensis
ENSRNOG00000022395	Tnrc6c	52	86.147	ENSSHAG00000018330	-	100	85.498	Sarcophilus_harrisii
ENSRNOG00000022395	Tnrc6c	53	55.734	ENSSFOG00015004735	-	99	60.313	Scleropages_formosus
ENSRNOG00000022395	Tnrc6c	78	57.646	ENSSFOG00015006475	tnrc6c1	77	56.522	Scleropages_formosus
ENSRNOG00000022395	Tnrc6c	96	49.883	ENSSMAG00000012761	tnrc6c1	99	50.087	Scophthalmus_maximus
ENSRNOG00000022395	Tnrc6c	94	51.065	ENSSDUG00000002366	tnrc6c1	91	51.296	Seriola_dumerili
ENSRNOG00000022395	Tnrc6c	94	49.497	ENSSLDG00000025613	tnrc6c1	97	49.857	Seriola_lalandi_dorsalis
ENSRNOG00000022395	Tnrc6c	91	89.655	ENSSARG00000006816	TNRC6C	88	89.427	Sorex_araneus
ENSRNOG00000022395	Tnrc6c	85	80.416	ENSSPUG00000007341	TNRC6C	94	79.946	Sphenodon_punctatus
ENSRNOG00000022395	Tnrc6c	78	53.503	ENSSPAG00000014977	tnrc6c1	90	49.683	Stegastes_partitus
ENSRNOG00000022395	Tnrc6c	100	83.955	ENSSSCG00000034373	TNRC6C	100	84.073	Sus_scrofa
ENSRNOG00000022395	Tnrc6c	100	86.111	ENSTGUG00000007733	TNRC6C	97	86.111	Taeniopygia_guttata
ENSRNOG00000022395	Tnrc6c	87	52.274	ENSTRUG00000011685	tnrc6c1	79	53.762	Takifugu_rubripes
ENSRNOG00000022395	Tnrc6c	90	54.908	ENSTNIG00000005273	tnrc6c1	100	59.764	Tetraodon_nigroviridis
ENSRNOG00000022395	Tnrc6c	64	90.234	ENSTBEG00000005046	TNRC6C	99	81.602	Tupaia_belangeri
ENSRNOG00000022395	Tnrc6c	100	89.073	ENSTTRG00000010828	TNRC6C	97	89.073	Tursiops_truncatus
ENSRNOG00000022395	Tnrc6c	100	87.566	ENSUMAG00000013614	TNRC6C	90	87.507	Ursus_maritimus
ENSRNOG00000022395	Tnrc6c	52	79.841	ENSVPAG00000006765	-	99	80.069	Vicugna_pacos
ENSRNOG00000022395	Tnrc6c	100	89.882	ENSVVUG00000015268	TNRC6C	100	90.000	Vulpes_vulpes
ENSRNOG00000022395	Tnrc6c	100	73.505	ENSXETG00000019470	tnrc6c	100	72.887	Xenopus_tropicalis
ENSRNOG00000022395	Tnrc6c	97	51.008	ENSXMAG00000025971	tnrc6c1	97	49.372	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0001706	endoderm formation	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0007492	endoderm development	-	ISO	Process
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035162	embryonic hemopoiesis	-	ISO	Process
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035195	gene silencing by miRNA	-	ISO	Process
GO:0035278	miRNA mediated inhibition of translation	-	IEA	Process
GO:0048568	embryonic organ development	-	ISO	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0060964	regulation of gene silencing by miRNA	-	ISO	Process
GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	-	ISO	Process