EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000023140 (Gene tree)
Gene ID: 361478
Gene Symbol: Pnldc1
Alias: LOC361478|MGC116282
Full Name: PARN like%2C ribonuclease domain containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 18492 bases
Position: chr1:48039909-48058400
Accession: 1308678
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000057157	CAF1	PF04857.20	5.5e-79	1	1
ENSRNOP00000068354	CAF1	PF04857.20	9.6e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000075858	-	2002	-	ENSRNOP00000068221	341 (aa)	-	Q4KLL1
ENSRNOT00000076545	-	759	-	-	- (aa)	-	-
ENSRNOT00000076338	-	766	-	ENSRNOP00000068354	160 (aa)	-	A0A096MK26
ENSRNOT00000076225	-	1663	-	ENSRNOP00000067996	436 (aa)	-	A0A096MJ55
ENSRNOT00000060412	-	1859	XM_006227880	ENSRNOP00000057157	530 (aa)	XP_006227942	A0A096UWG8

Gene Model

Click here to download ENSRNOG00000023140's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023140's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000023140	Pnldc1	89	30.462	ENSRNOG00000002912	Parn	79	40.741

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000023140	Pnldc1	100	86.250	ENSG00000146453	PNLDC1	99	85.985	Homo_sapiens
ENSRNOG00000023140	Pnldc1	99	86.164	ENSAMEG00000015371	PNLDC1	99	85.660	Ailuropoda_melanoleuca
ENSRNOG00000023140	Pnldc1	71	30.258	ENSAPEG00000010661	parn	50	30.258	Amphiprion_percula
ENSRNOG00000023140	Pnldc1	100	54.601	ENSAPLG00000007014	PNLDC1	98	58.869	Anas_platyrhynchos
ENSRNOG00000023140	Pnldc1	99	59.510	ENSACAG00000013667	PNLDC1	99	59.510	Anolis_carolinensis
ENSRNOG00000023140	Pnldc1	89	31.832	ENSACAG00000004973	PARN	73	30.185	Anolis_carolinensis
ENSRNOG00000023140	Pnldc1	55	41.071	ENSANAG00000023815	-	70	41.071	Aotus_nancymaae
ENSRNOG00000023140	Pnldc1	100	85.311	ENSANAG00000034713	PNLDC1	100	86.497	Aotus_nancymaae
ENSRNOG00000023140	Pnldc1	89	30.422	ENSAMXG00000012390	parn	51	30.422	Astyanax_mexicanus
ENSRNOG00000023140	Pnldc1	99	85.535	ENSBTAG00000015166	PNLDC1	95	86.680	Bos_taurus
ENSRNOG00000023140	Pnldc1	100	84.369	ENSCJAG00000011865	PNLDC1	100	84.369	Callithrix_jacchus
ENSRNOG00000023140	Pnldc1	89	30.120	ENSCAFG00000018795	PARN	51	30.120	Canis_familiaris
ENSRNOG00000023140	Pnldc1	100	87.571	ENSCAFG00000000740	PNLDC1	100	87.571	Canis_familiaris
ENSRNOG00000023140	Pnldc1	89	30.120	ENSCAFG00020024126	PARN	51	30.120	Canis_lupus_dingo
ENSRNOG00000023140	Pnldc1	99	87.421	ENSCAFG00020017742	PNLDC1	100	85.338	Canis_lupus_dingo
ENSRNOG00000023140	Pnldc1	99	85.535	ENSCHIG00000003141	PNLDC1	100	83.677	Capra_hircus
ENSRNOG00000023140	Pnldc1	100	83.427	ENSTSYG00000005606	PNLDC1	100	83.427	Carlito_syrichta
ENSRNOG00000023140	Pnldc1	57	41.071	ENSTSYG00000011320	TOE1	76	37.705	Carlito_syrichta
ENSRNOG00000023140	Pnldc1	100	62.406	ENSCAPG00000011893	PNLDC1	100	62.406	Cavia_aperea
ENSRNOG00000023140	Pnldc1	99	82.390	ENSCPOG00000019565	PNLDC1	100	79.511	Cavia_porcellus
ENSRNOG00000023140	Pnldc1	55	41.071	ENSCCAG00000030245	TOE1	70	41.071	Cebus_capucinus
ENSRNOG00000023140	Pnldc1	100	85.499	ENSCCAG00000026232	PNLDC1	100	85.499	Cebus_capucinus
ENSRNOG00000023140	Pnldc1	100	86.875	ENSCATG00000033196	PNLDC1	100	85.499	Cercocebus_atys
ENSRNOG00000023140	Pnldc1	100	89.375	ENSCLAG00000003228	PNLDC1	99	84.906	Chinchilla_lanigera
ENSRNOG00000023140	Pnldc1	100	85.000	ENSCSAG00000012478	PNLDC1	98	84.479	Chlorocebus_sabaeus
ENSRNOG00000023140	Pnldc1	100	62.112	ENSCPBG00000004050	PNLDC1	100	65.625	Chrysemys_picta_bellii
ENSRNOG00000023140	Pnldc1	100	86.875	ENSCANG00000043076	PNLDC1	97	85.573	Colobus_angolensis_palliatus
ENSRNOG00000023140	Pnldc1	100	86.875	ENSCGRG00001007470	-	99	86.817	Cricetulus_griseus_chok1gshd
ENSRNOG00000023140	Pnldc1	100	70.189	ENSCGRG00001011981	-	99	70.189	Cricetulus_griseus_chok1gshd
ENSRNOG00000023140	Pnldc1	89	30.154	ENSCGRG00001012096	Parn	51	31.902	Cricetulus_griseus_chok1gshd
ENSRNOG00000023140	Pnldc1	100	72.264	ENSCGRG00000003103	-	99	72.264	Cricetulus_griseus_crigri
ENSRNOG00000023140	Pnldc1	100	86.875	ENSCGRG00000010221	-	99	86.817	Cricetulus_griseus_crigri
ENSRNOG00000023140	Pnldc1	89	30.154	ENSCGRG00000004939	Parn	51	31.902	Cricetulus_griseus_crigri
ENSRNOG00000023140	Pnldc1	100	84.962	ENSDNOG00000013709	PNLDC1	100	84.962	Dasypus_novemcinctus
ENSRNOG00000023140	Pnldc1	100	90.000	ENSDORG00000011517	Pnldc1	99	87.859	Dipodomys_ordii
ENSRNOG00000023140	Pnldc1	95	79.605	ENSETEG00000007587	PNLDC1	99	76.113	Echinops_telfairi
ENSRNOG00000023140	Pnldc1	98	30.639	ENSEBUG00000008118	PNLDC1	98	30.639	Eptatretus_burgeri
ENSRNOG00000023140	Pnldc1	98	85.629	ENSEASG00005019029	PNLDC1	100	79.434	Equus_asinus_asinus
ENSRNOG00000023140	Pnldc1	100	86.441	ENSECAG00000012898	PNLDC1	100	86.441	Equus_caballus
ENSRNOG00000023140	Pnldc1	99	77.987	ENSEEUG00000005717	-	86	78.125	Erinaceus_europaeus
ENSRNOG00000023140	Pnldc1	100	87.759	ENSFCAG00000002848	PNLDC1	100	87.759	Felis_catus
ENSRNOG00000023140	Pnldc1	52	30.120	ENSFALG00000003911	PARN	50	30.247	Ficedula_albicollis
ENSRNOG00000023140	Pnldc1	100	54.601	ENSFALG00000012081	PNLDC1	99	58.052	Ficedula_albicollis
ENSRNOG00000023140	Pnldc1	100	91.250	ENSFDAG00000021334	PNLDC1	100	85.876	Fukomys_damarensis
ENSRNOG00000023140	Pnldc1	89	30.211	ENSFDAG00000009234	PARN	51	30.211	Fukomys_damarensis
ENSRNOG00000023140	Pnldc1	97	59.016	ENSGALG00000011624	PNLDC1	83	59.016	Gallus_gallus
ENSRNOG00000023140	Pnldc1	99	66.288	ENSGAGG00000015276	PNLDC1	100	67.355	Gopherus_agassizii
ENSRNOG00000023140	Pnldc1	100	86.250	ENSGGOG00000014077	PNLDC1	100	85.311	Gorilla_gorilla
ENSRNOG00000023140	Pnldc1	100	90.000	ENSHGLG00000006889	PNLDC1	100	86.064	Heterocephalus_glaber_female
ENSRNOG00000023140	Pnldc1	100	90.000	ENSHGLG00100018275	PNLDC1	100	86.064	Heterocephalus_glaber_male
ENSRNOG00000023140	Pnldc1	100	90.000	ENSSTOG00000005595	PNLDC1	99	89.205	Ictidomys_tridecemlineatus
ENSRNOG00000023140	Pnldc1	89	30.422	ENSSTOG00000007519	PARN	51	30.422	Ictidomys_tridecemlineatus
ENSRNOG00000023140	Pnldc1	99	83.333	ENSJJAG00000009937	Pnldc1	99	83.333	Jaculus_jaculus
ENSRNOG00000023140	Pnldc1	88	30.061	ENSLACG00000004207	PARN	76	30.061	Latimeria_chalumnae
ENSRNOG00000023140	Pnldc1	99	82.405	ENSLAFG00000030189	PNLDC1	99	82.405	Loxodonta_africana
ENSRNOG00000023140	Pnldc1	100	86.250	ENSMFAG00000041296	PNLDC1	100	85.499	Macaca_fascicularis
ENSRNOG00000023140	Pnldc1	100	86.250	ENSMMUG00000004181	PNLDC1	100	85.499	Macaca_mulatta
ENSRNOG00000023140	Pnldc1	100	86.250	ENSMNEG00000034271	PNLDC1	100	85.311	Macaca_nemestrina
ENSRNOG00000023140	Pnldc1	100	86.875	ENSMLEG00000044059	PNLDC1	100	82.298	Mandrillus_leucophaeus
ENSRNOG00000023140	Pnldc1	100	55.901	ENSMGAG00000012470	PNLDC1	97	58.498	Meleagris_gallopavo
ENSRNOG00000023140	Pnldc1	99	68.927	ENSMAUG00000012298	Pnldc1	100	68.927	Mesocricetus_auratus
ENSRNOG00000023140	Pnldc1	100	85.876	ENSMICG00000008021	PNLDC1	100	85.876	Microcebus_murinus
ENSRNOG00000023140	Pnldc1	100	95.000	ENSMOCG00000014287	Pnldc1	100	93.621	Microtus_ochrogaster
ENSRNOG00000023140	Pnldc1	89	30.154	ENSMOCG00000022211	Parn	66	31.902	Microtus_ochrogaster
ENSRNOG00000023140	Pnldc1	89	30.030	ENSMODG00000004915	PARN	66	30.030	Monodelphis_domestica
ENSRNOG00000023140	Pnldc1	99	76.236	ENSMODG00000007420	PNLDC1	99	76.236	Monodelphis_domestica
ENSRNOG00000023140	Pnldc1	89	31.077	MGP_CAROLIEiJ_G0020466	Parn	51	32.209	Mus_caroli
ENSRNOG00000023140	Pnldc1	100	97.363	MGP_CAROLIEiJ_G0021045	Pnldc1	100	97.363	Mus_caroli
ENSRNOG00000023140	Pnldc1	100	97.175	ENSMUSG00000073460	Pnldc1	100	97.778	Mus_musculus
ENSRNOG00000023140	Pnldc1	89	31.077	ENSMUSG00000022685	Parn	96	32.178	Mus_musculus
ENSRNOG00000023140	Pnldc1	89	30.462	MGP_PahariEiJ_G0016172	Parn	51	31.595	Mus_pahari
ENSRNOG00000023140	Pnldc1	100	98.125	MGP_PahariEiJ_G0023361	Pnldc1	100	96.798	Mus_pahari
ENSRNOG00000023140	Pnldc1	89	31.077	MGP_SPRETEiJ_G0021361	Parn	51	31.692	Mus_spretus
ENSRNOG00000023140	Pnldc1	100	96.798	MGP_SPRETEiJ_G0021975	Pnldc1	100	96.798	Mus_spretus
ENSRNOG00000023140	Pnldc1	99	87.170	ENSMPUG00000004920	PNLDC1	99	87.170	Mustela_putorius_furo
ENSRNOG00000023140	Pnldc1	100	85.687	ENSMLUG00000000747	PNLDC1	100	85.687	Myotis_lucifugus
ENSRNOG00000023140	Pnldc1	89	30.514	ENSMLUG00000005414	PARN	66	30.514	Myotis_lucifugus
ENSRNOG00000023140	Pnldc1	100	94.162	ENSNGAG00000017714	Pnldc1	99	94.162	Nannospalax_galili
ENSRNOG00000023140	Pnldc1	100	85.625	ENSNLEG00000011282	PNLDC1	99	83.721	Nomascus_leucogenys
ENSRNOG00000023140	Pnldc1	99	50.314	ENSMEUG00000014042	-	100	65.625	Notamacropus_eugenii
ENSRNOG00000023140	Pnldc1	64	66.019	ENSMEUG00000011926	-	64	63.323	Notamacropus_eugenii
ENSRNOG00000023140	Pnldc1	86	82.609	ENSOPRG00000003813	PNLDC1	79	84.091	Ochotona_princeps
ENSRNOG00000023140	Pnldc1	100	88.125	ENSODEG00000008047	PNLDC1	100	85.876	Octodon_degus
ENSRNOG00000023140	Pnldc1	100	62.112	ENSOANG00000012199	PNLDC1	99	58.979	Ornithorhynchus_anatinus
ENSRNOG00000023140	Pnldc1	100	86.629	ENSOCUG00000013867	PNLDC1	100	86.629	Oryctolagus_cuniculus
ENSRNOG00000023140	Pnldc1	89	31.024	ENSOGAG00000014626	PARN	66	31.818	Otolemur_garnettii
ENSRNOG00000023140	Pnldc1	100	86.250	ENSOGAG00000007331	PNLDC1	99	87.121	Otolemur_garnettii
ENSRNOG00000023140	Pnldc1	99	85.535	ENSOARG00000004585	PNLDC1	100	83.585	Ovis_aries
ENSRNOG00000023140	Pnldc1	100	85.625	ENSPPAG00000026651	PNLDC1	100	85.311	Pan_paniscus
ENSRNOG00000023140	Pnldc1	100	87.759	ENSPPRG00000012854	PNLDC1	100	87.759	Panthera_pardus
ENSRNOG00000023140	Pnldc1	99	87.421	ENSPTIG00000011501	PNLDC1	99	82.732	Panthera_tigris_altaica
ENSRNOG00000023140	Pnldc1	100	85.625	ENSPTRG00000018762	PNLDC1	100	85.311	Pan_troglodytes
ENSRNOG00000023140	Pnldc1	100	86.250	ENSPANG00000022009	PNLDC1	100	85.687	Papio_anubis
ENSRNOG00000023140	Pnldc1	58	41.071	ENSPSIG00000010299	TOE1	69	41.071	Pelodiscus_sinensis
ENSRNOG00000023140	Pnldc1	89	31.928	ENSPSIG00000014804	PARN	51	32.229	Pelodiscus_sinensis
ENSRNOG00000023140	Pnldc1	96	61.290	ENSPSIG00000011419	PNLDC1	86	64.865	Pelodiscus_sinensis
ENSRNOG00000023140	Pnldc1	100	95.625	ENSPEMG00000016301	Pnldc1	99	95.480	Peromyscus_maniculatus_bairdii
ENSRNOG00000023140	Pnldc1	89	30.952	ENSPMAG00000003956	parn	90	30.204	Petromyzon_marinus
ENSRNOG00000023140	Pnldc1	99	74.214	ENSPCIG00000023412	PNLDC1	100	78.311	Phascolarctos_cinereus
ENSRNOG00000023140	Pnldc1	100	86.250	ENSPPYG00000017148	PNLDC1	100	80.451	Pongo_abelii
ENSRNOG00000023140	Pnldc1	100	79.375	ENSPCAG00000014169	PNLDC1	99	77.736	Procavia_capensis
ENSRNOG00000023140	Pnldc1	100	86.441	ENSPCOG00000025722	PNLDC1	100	86.441	Propithecus_coquereli
ENSRNOG00000023140	Pnldc1	87	31.173	ENSPVAG00000002547	PARN	50	31.173	Pteropus_vampyrus
ENSRNOG00000023140	Pnldc1	99	86.164	ENSPVAG00000005325	PNLDC1	73	90.130	Pteropus_vampyrus
ENSRNOG00000023140	Pnldc1	84	31.915	ENSPNAG00000018905	parn	70	30.159	Pygocentrus_nattereri
ENSRNOG00000023140	Pnldc1	100	86.875	ENSRBIG00000033806	PNLDC1	100	85.687	Rhinopithecus_bieti
ENSRNOG00000023140	Pnldc1	100	86.875	ENSRROG00000043919	PNLDC1	97	85.771	Rhinopithecus_roxellana
ENSRNOG00000023140	Pnldc1	100	85.499	ENSSBOG00000019135	PNLDC1	100	85.499	Saimiri_boliviensis_boliviensis
ENSRNOG00000023140	Pnldc1	55	41.071	ENSSBOG00000026044	-	70	41.071	Saimiri_boliviensis_boliviensis
ENSRNOG00000023140	Pnldc1	99	74.843	ENSSHAG00000015192	PNLDC1	97	77.075	Sarcophilus_harrisii
ENSRNOG00000023140	Pnldc1	88	30.154	ENSSHAG00000008493	PARN	72	30.154	Sarcophilus_harrisii
ENSRNOG00000023140	Pnldc1	100	60.248	ENSSPUG00000004627	PNLDC1	99	64.732	Sphenodon_punctatus
ENSRNOG00000023140	Pnldc1	99	86.164	ENSSSCG00000004046	PNLDC1	99	83.694	Sus_scrofa
ENSRNOG00000023140	Pnldc1	52	30.120	ENSTGUG00000004971	PARN	50	30.462	Taeniopygia_guttata
ENSRNOG00000023140	Pnldc1	100	54.321	ENSTGUG00000011418	PNLDC1	99	59.381	Taeniopygia_guttata
ENSRNOG00000023140	Pnldc1	96	75.490	ENSTBEG00000009131	PNLDC1	98	75.490	Tupaia_belangeri
ENSRNOG00000023140	Pnldc1	87	30.247	ENSTTRG00000002843	PARN	51	30.247	Tursiops_truncatus
ENSRNOG00000023140	Pnldc1	99	84.906	ENSTTRG00000010409	PNLDC1	73	82.383	Tursiops_truncatus
ENSRNOG00000023140	Pnldc1	99	86.164	ENSUAMG00000015783	PNLDC1	99	73.297	Ursus_americanus
ENSRNOG00000023140	Pnldc1	99	86.164	ENSUMAG00000011903	PNLDC1	99	78.558	Ursus_maritimus
ENSRNOG00000023140	Pnldc1	89	30.211	ENSVVUG00000019509	PARN	51	30.211	Vulpes_vulpes
ENSRNOG00000023140	Pnldc1	99	87.421	ENSVVUG00000006586	PNLDC1	99	87.064	Vulpes_vulpes
ENSRNOG00000023140	Pnldc1	89	30.606	ENSXETG00000010994	parn	62	30.606	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0001825	blastocyst formation	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process