EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000023299 (Gene tree)
Gene ID: 690161
Gene Symbol: Hfm1
Alias: LOC501885|LOC690161
Full Name: HFM1%2C ATP-dependent DNA helicase homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 78512 bases
Position: chr14:3882398-3960909
Accession: 1584010
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000034409	ResIII	PF04851.15	9e-12	1	1
ENSRNOP00000034409	DEAD	PF00270.29	4.9e-26	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000033794	-	4305	XM_006250582	ENSRNOP00000034409	1434 (aa)	XP_006250644	F1LWY1

Gene Model

Click here to download ENSRNOG00000023299's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023299's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000023299	Hfm1	58	32.633	ENSRNOG00000012157	Snrnp200	74	32.357
ENSRNOG00000023299	Hfm1	51	36.707	ENSRNOG00000037604	Ascc3	61	36.707

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000023299	Hfm1	100	76.356	ENSG00000162669	HFM1	100	76.356	Homo_sapiens
ENSRNOG00000023299	Hfm1	62	64.790	ENSAPOG00000005304	hfm1	100	64.790	Acanthochromis_polyacanthus
ENSRNOG00000023299	Hfm1	100	75.400	ENSAMEG00000000432	HFM1	100	75.400	Ailuropoda_melanoleuca
ENSRNOG00000023299	Hfm1	71	58.641	ENSACIG00000021553	hfm1	91	58.641	Amphilophus_citrinellus
ENSRNOG00000023299	Hfm1	62	64.946	ENSAOCG00000022839	hfm1	100	64.946	Amphiprion_ocellaris
ENSRNOG00000023299	Hfm1	62	64.826	ENSAPEG00000014316	hfm1	100	64.826	Amphiprion_percula
ENSRNOG00000023299	Hfm1	66	62.955	ENSATEG00000019181	hfm1	80	61.894	Anabas_testudineus
ENSRNOG00000023299	Hfm1	100	57.609	ENSAPLG00000013639	HFM1	100	57.609	Anas_platyrhynchos
ENSRNOG00000023299	Hfm1	100	74.097	ENSANAG00000029513	HFM1	100	74.097	Aotus_nancymaae
ENSRNOG00000023299	Hfm1	70	58.039	ENSACLG00000009033	hfm1	97	63.647	Astatotilapia_calliptera
ENSRNOG00000023299	Hfm1	67	64.374	ENSAMXG00000006108	hfm1	67	64.374	Astyanax_mexicanus
ENSRNOG00000023299	Hfm1	100	74.444	ENSBTAG00000020856	HFM1	100	74.444	Bos_taurus
ENSRNOG00000023299	Hfm1	100	74.826	ENSCJAG00000001843	HFM1	100	74.826	Callithrix_jacchus
ENSRNOG00000023299	Hfm1	100	74.218	ENSCAFG00000020187	HFM1	100	74.218	Canis_familiaris
ENSRNOG00000023299	Hfm1	100	74.861	ENSTSYG00000014250	HFM1	100	74.861	Carlito_syrichta
ENSRNOG00000023299	Hfm1	99	72.683	ENSCPOG00000007421	HFM1	99	72.683	Cavia_porcellus
ENSRNOG00000023299	Hfm1	100	74.896	ENSCCAG00000033206	HFM1	100	74.896	Cebus_capucinus
ENSRNOG00000023299	Hfm1	100	75.382	ENSCATG00000030987	HFM1	100	75.382	Cercocebus_atys
ENSRNOG00000023299	Hfm1	100	72.770	ENSCLAG00000005173	HFM1	99	72.770	Chinchilla_lanigera
ENSRNOG00000023299	Hfm1	62	85.526	ENSCHOG00000011824	-	70	85.526	Choloepus_hoffmanni
ENSRNOG00000023299	Hfm1	100	80.681	ENSCGRG00001016995	Hfm1	100	80.681	Cricetulus_griseus_chok1gshd
ENSRNOG00000023299	Hfm1	100	84.401	ENSCGRG00000017181	Hfm1	100	84.401	Cricetulus_griseus_crigri
ENSRNOG00000023299	Hfm1	71	57.703	ENSCSEG00000017659	hfm1	94	57.703	Cynoglossus_semilaevis
ENSRNOG00000023299	Hfm1	50	67.416	ENSCVAG00000005075	hfm1	86	67.416	Cyprinodon_variegatus
ENSRNOG00000023299	Hfm1	76	54.472	ENSDARG00000104288	hfm1	96	54.472	Danio_rerio
ENSRNOG00000023299	Hfm1	100	71.361	ENSDNOG00000004776	HFM1	100	71.361	Dasypus_novemcinctus
ENSRNOG00000023299	Hfm1	100	72.421	ENSDORG00000014661	Hfm1	100	72.421	Dipodomys_ordii
ENSRNOG00000023299	Hfm1	71	79.475	ENSEASG00005015424	HFM1	98	79.475	Equus_asinus_asinus
ENSRNOG00000023299	Hfm1	100	73.805	ENSECAG00000024039	HFM1	100	73.805	Equus_caballus
ENSRNOG00000023299	Hfm1	63	65.677	ENSELUG00000018944	hfm1	97	65.677	Esox_lucius
ENSRNOG00000023299	Hfm1	100	75.486	ENSFCAG00000029116	HFM1	100	75.486	Felis_catus
ENSRNOG00000023299	Hfm1	100	56.700	ENSFALG00000001781	HFM1	100	57.153	Ficedula_albicollis
ENSRNOG00000023299	Hfm1	100	72.159	ENSFDAG00000020816	HFM1	100	72.159	Fukomys_damarensis
ENSRNOG00000023299	Hfm1	66	60.293	ENSGMOG00000017436	hfm1	99	60.293	Gadus_morhua
ENSRNOG00000023299	Hfm1	71	58.892	ENSGAFG00000018093	hfm1	93	64.826	Gambusia_affinis
ENSRNOG00000023299	Hfm1	66	60.666	ENSGACG00000015686	hfm1	99	60.666	Gasterosteus_aculeatus
ENSRNOG00000023299	Hfm1	100	76.078	ENSGGOG00000038524	HFM1	100	76.078	Gorilla_gorilla
ENSRNOG00000023299	Hfm1	70	59.020	ENSHBUG00000007309	hfm1	97	57.801	Haplochromis_burtoni
ENSRNOG00000023299	Hfm1	57	62.454	ENSHCOG00000019632	hfm1	97	62.454	Hippocampus_comes
ENSRNOG00000023299	Hfm1	66	64.550	ENSIPUG00000017020	hfm1	92	65.952	Ictalurus_punctatus
ENSRNOG00000023299	Hfm1	100	74.443	ENSJJAG00000017198	Hfm1	100	74.443	Jaculus_jaculus
ENSRNOG00000023299	Hfm1	62	61.191	ENSKMAG00000002282	hfm1	91	61.191	Kryptolebias_marmoratus
ENSRNOG00000023299	Hfm1	71	57.915	ENSLBEG00000006759	hfm1	96	63.962	Labrus_bergylta
ENSRNOG00000023299	Hfm1	71	63.551	ENSLACG00000010698	HFM1	100	63.738	Latimeria_chalumnae
ENSRNOG00000023299	Hfm1	72	63.248	ENSLOCG00000004931	hfm1	96	63.248	Lepisosteus_oculatus
ENSRNOG00000023299	Hfm1	52	83.984	ENSLAFG00000015903	-	99	83.984	Loxodonta_africana
ENSRNOG00000023299	Hfm1	100	73.527	ENSMFAG00000003649	HFM1	100	73.527	Macaca_fascicularis
ENSRNOG00000023299	Hfm1	100	75.661	ENSMMUG00000006819	HFM1	100	75.661	Macaca_mulatta
ENSRNOG00000023299	Hfm1	55	67.754	ENSMAMG00000004623	hfm1	97	65.054	Mastacembelus_armatus
ENSRNOG00000023299	Hfm1	70	58.039	ENSMZEG00005004679	hfm1	97	63.647	Maylandia_zebra
ENSRNOG00000023299	Hfm1	54	76.615	ENSMGAG00000008437	HFM1	96	76.615	Meleagris_gallopavo
ENSRNOG00000023299	Hfm1	100	83.438	ENSMAUG00000018858	Hfm1	100	83.438	Mesocricetus_auratus
ENSRNOG00000023299	Hfm1	100	75.330	ENSMICG00000037935	HFM1	100	75.330	Microcebus_murinus
ENSRNOG00000023299	Hfm1	100	81.045	ENSMOCG00000014812	Hfm1	100	81.045	Microtus_ochrogaster
ENSRNOG00000023299	Hfm1	62	62.332	ENSMMOG00000006148	hfm1	96	63.573	Mola_mola
ENSRNOG00000023299	Hfm1	65	62.927	ENSMALG00000002401	hfm1	96	63.986	Monopterus_albus
ENSRNOG00000023299	Hfm1	95	83.218	MGP_CAROLIEiJ_G0027496	Hfm1	100	83.218	Mus_caroli
ENSRNOG00000023299	Hfm1	100	88.563	ENSMUSG00000043410	Hfm1	100	88.563	Mus_musculus
ENSRNOG00000023299	Hfm1	100	88.006	MGP_PahariEiJ_G0017268	Hfm1	100	88.006	Mus_pahari
ENSRNOG00000023299	Hfm1	100	88.215	MGP_SPRETEiJ_G0028495	Hfm1	100	88.215	Mus_spretus
ENSRNOG00000023299	Hfm1	100	72.525	ENSMPUG00000004594	HFM1	100	72.525	Mustela_putorius_furo
ENSRNOG00000023299	Hfm1	100	73.218	ENSMLUG00000010200	HFM1	100	73.218	Myotis_lucifugus
ENSRNOG00000023299	Hfm1	70	55.686	ENSNBRG00000002910	hfm1	97	63.835	Neolamprologus_brichardi
ENSRNOG00000023299	Hfm1	100	72.765	ENSNLEG00000010285	HFM1	100	72.765	Nomascus_leucogenys
ENSRNOG00000023299	Hfm1	84	61.905	ENSMEUG00000015788	HFM1	84	61.905	Notamacropus_eugenii
ENSRNOG00000023299	Hfm1	84	73.881	ENSOPRG00000013916	HFM1	83	73.881	Ochotona_princeps
ENSRNOG00000023299	Hfm1	71	59.961	ENSONIG00000010590	hfm1	99	59.847	Oreochromis_niloticus
ENSRNOG00000023299	Hfm1	57	64.409	ENSORLG00000026844	hfm1	99	64.409	Oryzias_latipes
ENSRNOG00000023299	Hfm1	68	55.624	ENSORLG00020002951	hfm1	77	55.624	Oryzias_latipes_hni
ENSRNOG00000023299	Hfm1	72	57.380	ENSOMEG00000016474	hfm1	75	57.380	Oryzias_melastigma
ENSRNOG00000023299	Hfm1	85	78.112	ENSOGAG00000032369	HFM1	100	78.112	Otolemur_garnettii
ENSRNOG00000023299	Hfm1	100	74.393	ENSOARG00000015812	HFM1	100	74.393	Ovis_aries
ENSRNOG00000023299	Hfm1	92	77.769	ENSPPAG00000024582	HFM1	100	77.769	Pan_paniscus
ENSRNOG00000023299	Hfm1	100	75.417	ENSPPRG00000003270	HFM1	100	75.417	Panthera_pardus
ENSRNOG00000023299	Hfm1	100	75.278	ENSPTIG00000018881	HFM1	100	75.278	Panthera_tigris_altaica
ENSRNOG00000023299	Hfm1	100	76.147	ENSPTRG00000000948	HFM1	100	76.147	Pan_troglodytes
ENSRNOG00000023299	Hfm1	100	75.661	ENSPANG00000009838	HFM1	100	75.661	Papio_anubis
ENSRNOG00000023299	Hfm1	62	65.843	ENSPKIG00000003810	hfm1	95	66.586	Paramormyrops_kingsleyae
ENSRNOG00000023299	Hfm1	58	64.407	ENSPMGG00000011059	hfm1	100	64.407	Periophthalmus_magnuspinnatus
ENSRNOG00000023299	Hfm1	100	85.157	ENSPEMG00000022852	Hfm1	100	85.157	Peromyscus_maniculatus_bairdii
ENSRNOG00000023299	Hfm1	100	64.089	ENSPCIG00000014233	HFM1	100	64.089	Phascolarctos_cinereus
ENSRNOG00000023299	Hfm1	70	61.266	ENSPFOG00000017194	hfm1	99	61.553	Poecilia_formosa
ENSRNOG00000023299	Hfm1	71	61.209	ENSPLAG00000000571	hfm1	92	61.209	Poecilia_latipinna
ENSRNOG00000023299	Hfm1	71	61.133	ENSPMEG00000019475	hfm1	92	61.133	Poecilia_mexicana
ENSRNOG00000023299	Hfm1	71	60.959	ENSPREG00000007803	hfm1	97	62.804	Poecilia_reticulata
ENSRNOG00000023299	Hfm1	100	75.661	ENSPPYG00000001163	HFM1	100	75.661	Pongo_abelii
ENSRNOG00000023299	Hfm1	69	78.537	ENSPCAG00000004289	-	69	78.537	Procavia_capensis
ENSRNOG00000023299	Hfm1	100	68.450	ENSPVAG00000009713	HFM1	100	68.450	Pteropus_vampyrus
ENSRNOG00000023299	Hfm1	70	57.941	ENSPNYG00000001795	hfm1	97	63.647	Pundamilia_nyererei
ENSRNOG00000023299	Hfm1	59	65.880	ENSPNAG00000010865	hfm1	84	65.880	Pygocentrus_nattereri
ENSRNOG00000023299	Hfm1	100	75.382	ENSRROG00000045569	HFM1	100	75.382	Rhinopithecus_roxellana
ENSRNOG00000023299	Hfm1	100	73.296	ENSSBOG00000027456	HFM1	100	73.296	Saimiri_boliviensis_boliviensis
ENSRNOG00000023299	Hfm1	60	67.514	ENSSHAG00000014616	-	98	67.514	Sarcophilus_harrisii
ENSRNOG00000023299	Hfm1	68	63.310	ENSSFOG00015020129	hfm1	67	63.310	Scleropages_formosus
ENSRNOG00000023299	Hfm1	62	63.799	ENSSMAG00000006907	hfm1	87	63.799	Scophthalmus_maximus
ENSRNOG00000023299	Hfm1	60	63.785	ENSSDUG00000011424	hfm1	96	63.785	Seriola_dumerili
ENSRNOG00000023299	Hfm1	58	65.621	ENSSLDG00000016386	hfm1	92	65.621	Seriola_lalandi_dorsalis
ENSRNOG00000023299	Hfm1	69	57.619	ENSSPAG00000001023	hfm1	94	65.306	Stegastes_partitus
ENSRNOG00000023299	Hfm1	100	72.323	ENSSSCG00000006912	HFM1	99	73.981	Sus_scrofa
ENSRNOG00000023299	Hfm1	66	73.772	ENSTGUG00000006172	HFM1	100	73.772	Taeniopygia_guttata
ENSRNOG00000023299	Hfm1	100	72.114	ENSTTRG00000013933	HFM1	100	72.114	Tursiops_truncatus
ENSRNOG00000023299	Hfm1	93	75.608	ENSVPAG00000011331	HFM1	93	75.608	Vicugna_pacos
ENSRNOG00000023299	Hfm1	71	77.348	ENSVVUG00000020760	HFM1	99	77.348	Vulpes_vulpes
ENSRNOG00000023299	Hfm1	59	64.623	ENSXMAG00000004178	hfm1	94	64.623	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000712	resolution of meiotic recombination intermediates	-	IEA	Process
GO:0000712	resolution of meiotic recombination intermediates	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function