EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000023376 (Gene tree)
Gene ID: 361293
Gene Symbol: Riok3
Alias: LOC361293
Full Name: RIO kinase 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 25574 bases
Position: chr18:3565166-3590739
Accession: 1310833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000034041	RIO1	PF01163.22	4.1e-75	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000039377	-	3843	-	ENSRNOP00000034041	519 (aa)	-	D3ZND9

Gene Model

Click here to download ENSRNOG00000023376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023376's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000023376	Riok3	58	42.857	ENSRNOG00000014049	Riok1	64	42.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000023376	Riok3	100	94.027	ENSG00000101782	RIOK3	100	94.027	Homo_sapiens
ENSRNOG00000023376	Riok3	99	70.441	ENSAPOG00000020861	riok3	99	69.557	Acanthochromis_polyacanthus
ENSRNOG00000023376	Riok3	100	94.605	ENSAMEG00000013754	RIOK3	85	94.605	Ailuropoda_melanoleuca
ENSRNOG00000023376	Riok3	99	72.587	ENSACIG00000019894	riok3	98	73.453	Amphilophus_citrinellus
ENSRNOG00000023376	Riok3	99	72.169	ENSAOCG00000007172	riok3	99	73.511	Amphiprion_ocellaris
ENSRNOG00000023376	Riok3	99	71.977	ENSAPEG00000002536	riok3	99	72.690	Amphiprion_percula
ENSRNOG00000023376	Riok3	96	72.854	ENSATEG00000018303	riok3	99	72.854	Anabas_testudineus
ENSRNOG00000023376	Riok3	99	86.214	ENSAPLG00000006497	RIOK3	99	86.214	Anas_platyrhynchos
ENSRNOG00000023376	Riok3	99	83.398	ENSACAG00000000159	RIOK3	99	83.398	Anolis_carolinensis
ENSRNOG00000023376	Riok3	100	70.229	ENSANAG00000030146	RIOK3	100	70.229	Aotus_nancymaae
ENSRNOG00000023376	Riok3	93	74.691	ENSACLG00000018966	riok3	98	74.074	Astatotilapia_calliptera
ENSRNOG00000023376	Riok3	97	73.913	ENSAMXG00000015617	riok3	99	72.780	Astyanax_mexicanus
ENSRNOG00000023376	Riok3	100	94.798	ENSBTAG00000010042	RIOK3	100	94.798	Bos_taurus
ENSRNOG00000023376	Riok3	93	36.473	WBGene00014012	riok-3	91	35.685	Caenorhabditis_elegans
ENSRNOG00000023376	Riok3	100	94.605	ENSCJAG00000020556	RIOK3	100	94.605	Callithrix_jacchus
ENSRNOG00000023376	Riok3	100	94.798	ENSCAFG00000018201	RIOK3	100	94.798	Canis_familiaris
ENSRNOG00000023376	Riok3	99	94.584	ENSCAFG00020014801	RIOK3	99	95.864	Canis_lupus_dingo
ENSRNOG00000023376	Riok3	100	94.990	ENSCHIG00000009312	RIOK3	100	94.990	Capra_hircus
ENSRNOG00000023376	Riok3	99	95.146	ENSTSYG00000000142	RIOK3	99	95.536	Carlito_syrichta
ENSRNOG00000023376	Riok3	89	95.662	ENSCAPG00000005756	RIOK3	94	95.870	Cavia_aperea
ENSRNOG00000023376	Riok3	100	94.027	ENSCPOG00000007991	RIOK3	100	94.027	Cavia_porcellus
ENSRNOG00000023376	Riok3	100	94.412	ENSCCAG00000028338	RIOK3	98	93.874	Cebus_capucinus
ENSRNOG00000023376	Riok3	100	93.834	ENSCATG00000040824	RIOK3	100	93.834	Cercocebus_atys
ENSRNOG00000023376	Riok3	100	94.220	ENSCLAG00000006767	RIOK3	100	94.220	Chinchilla_lanigera
ENSRNOG00000023376	Riok3	100	94.027	ENSCSAG00000017680	RIOK3	100	94.027	Chlorocebus_sabaeus
ENSRNOG00000023376	Riok3	87	95.572	ENSCHOG00000008343	RIOK3	87	95.572	Choloepus_hoffmanni
ENSRNOG00000023376	Riok3	100	85.632	ENSCPBG00000027226	RIOK3	100	85.632	Chrysemys_picta_bellii
ENSRNOG00000023376	Riok3	97	49.343	ENSCSAVG00000003068	-	100	51.844	Ciona_savignyi
ENSRNOG00000023376	Riok3	95	79.596	ENSCANG00000035939	RIOK3	95	92.506	Colobus_angolensis_palliatus
ENSRNOG00000023376	Riok3	100	96.146	ENSCGRG00001013249	Riok3	100	96.146	Cricetulus_griseus_chok1gshd
ENSRNOG00000023376	Riok3	100	95.761	ENSCGRG00000017636	Riok3	100	95.761	Cricetulus_griseus_crigri
ENSRNOG00000023376	Riok3	99	70.769	ENSCSEG00000018289	riok3	99	71.901	Cynoglossus_semilaevis
ENSRNOG00000023376	Riok3	99	70.520	ENSCVAG00000011848	riok3	99	69.884	Cyprinodon_variegatus
ENSRNOG00000023376	Riok3	99	71.676	ENSDARG00000042751	riok3	99	71.567	Danio_rerio
ENSRNOG00000023376	Riok3	100	94.027	ENSDNOG00000039433	RIOK3	100	94.027	Dasypus_novemcinctus
ENSRNOG00000023376	Riok3	100	95.568	ENSDORG00000011663	Riok3	100	95.568	Dipodomys_ordii
ENSRNOG00000023376	Riok3	87	41.586	FBgn0031643	CG3008	70	46.759	Drosophila_melanogaster
ENSRNOG00000023376	Riok3	93	92.562	ENSETEG00000003689	RIOK3	100	92.562	Echinops_telfairi
ENSRNOG00000023376	Riok3	94	53.564	ENSEBUG00000000555	riok3	96	53.564	Eptatretus_burgeri
ENSRNOG00000023376	Riok3	100	93.256	ENSEASG00005002317	RIOK3	100	93.256	Equus_asinus_asinus
ENSRNOG00000023376	Riok3	100	93.256	ENSECAG00000009028	RIOK3	100	93.256	Equus_caballus
ENSRNOG00000023376	Riok3	96	76.104	ENSEEUG00000007005	RIOK3	100	76.104	Erinaceus_europaeus
ENSRNOG00000023376	Riok3	100	71.977	ENSELUG00000017655	riok3	99	70.532	Esox_lucius
ENSRNOG00000023376	Riok3	100	95.376	ENSFCAG00000000517	RIOK3	100	95.376	Felis_catus
ENSRNOG00000023376	Riok3	96	85.944	ENSFALG00000006145	RIOK3	99	84.393	Ficedula_albicollis
ENSRNOG00000023376	Riok3	100	92.871	ENSFDAG00000001548	RIOK3	100	92.871	Fukomys_damarensis
ENSRNOG00000023376	Riok3	93	74.486	ENSFHEG00000011350	riok3	99	70.600	Fundulus_heteroclitus
ENSRNOG00000023376	Riok3	88	72.707	ENSGMOG00000005157	riok3	98	72.707	Gadus_morhua
ENSRNOG00000023376	Riok3	96	86.747	ENSGALG00000015004	RIOK3	99	85.356	Gallus_gallus
ENSRNOG00000023376	Riok3	89	64.378	ENSGAFG00000002403	riok3	88	63.305	Gambusia_affinis
ENSRNOG00000023376	Riok3	95	72.056	ENSGACG00000000880	riok3	97	71.257	Gasterosteus_aculeatus
ENSRNOG00000023376	Riok3	100	83.525	ENSGAGG00000024785	RIOK3	100	83.525	Gopherus_agassizii
ENSRNOG00000023376	Riok3	56	93.493	ENSGGOG00000036734	-	94	93.493	Gorilla_gorilla
ENSRNOG00000023376	Riok3	99	71.236	ENSHBUG00000003233	riok3	99	70.656	Haplochromis_burtoni
ENSRNOG00000023376	Riok3	100	93.449	ENSHGLG00000003885	RIOK3	100	93.449	Heterocephalus_glaber_female
ENSRNOG00000023376	Riok3	100	93.449	ENSHGLG00100002077	RIOK3	100	93.449	Heterocephalus_glaber_male
ENSRNOG00000023376	Riok3	99	70.849	ENSHCOG00000006794	riok3	97	70.135	Hippocampus_comes
ENSRNOG00000023376	Riok3	96	73.038	ENSIPUG00000001406	Riok3	97	72.435	Ictalurus_punctatus
ENSRNOG00000023376	Riok3	100	95.954	ENSSTOG00000006517	RIOK3	100	95.954	Ictidomys_tridecemlineatus
ENSRNOG00000023376	Riok3	100	94.275	ENSJJAG00000023689	Riok3	100	94.275	Jaculus_jaculus
ENSRNOG00000023376	Riok3	99	71.845	ENSKMAG00000007259	riok3	99	71.068	Kryptolebias_marmoratus
ENSRNOG00000023376	Riok3	97	71.739	ENSLBEG00000013689	riok3	98	71.287	Labrus_bergylta
ENSRNOG00000023376	Riok3	100	74.231	ENSLACG00000017326	RIOK3	100	74.231	Latimeria_chalumnae
ENSRNOG00000023376	Riok3	99	76.402	ENSLOCG00000001652	riok3	99	76.402	Lepisosteus_oculatus
ENSRNOG00000023376	Riok3	100	92.308	ENSLAFG00000001380	RIOK3	100	91.923	Loxodonta_africana
ENSRNOG00000023376	Riok3	100	94.220	ENSMMUG00000021478	RIOK3	100	94.220	Macaca_mulatta
ENSRNOG00000023376	Riok3	100	82.852	ENSMNEG00000041106	RIOK3	100	82.852	Macaca_nemestrina
ENSRNOG00000023376	Riok3	100	94.220	ENSMLEG00000028187	RIOK3	100	94.220	Mandrillus_leucophaeus
ENSRNOG00000023376	Riok3	95	72.691	ENSMAMG00000008502	riok3	97	72.088	Mastacembelus_armatus
ENSRNOG00000023376	Riok3	99	71.429	ENSMZEG00005020212	riok3	99	70.849	Maylandia_zebra
ENSRNOG00000023376	Riok3	99	84.170	ENSMGAG00000010079	RIOK3	99	84.170	Meleagris_gallopavo
ENSRNOG00000023376	Riok3	100	95.954	ENSMAUG00000020527	Riok3	100	95.954	Mesocricetus_auratus
ENSRNOG00000023376	Riok3	100	95.761	ENSMICG00000009293	RIOK3	100	95.376	Microcebus_murinus
ENSRNOG00000023376	Riok3	99	95.136	ENSMOCG00000012114	Riok3	96	95.136	Microtus_ochrogaster
ENSRNOG00000023376	Riok3	93	71.253	ENSMMOG00000019204	riok3	98	70.370	Mola_mola
ENSRNOG00000023376	Riok3	100	89.808	ENSMODG00000021496	RIOK3	100	89.808	Monodelphis_domestica
ENSRNOG00000023376	Riok3	99	71.429	ENSMALG00000020848	riok3	99	70.986	Monopterus_albus
ENSRNOG00000023376	Riok3	100	96.532	MGP_CAROLIEiJ_G0022001	Riok3	100	96.532	Mus_caroli
ENSRNOG00000023376	Riok3	100	97.110	ENSMUSG00000024404	Riok3	100	100.000	Mus_musculus
ENSRNOG00000023376	Riok3	100	97.303	MGP_PahariEiJ_G0018739	Riok3	100	97.303	Mus_pahari
ENSRNOG00000023376	Riok3	100	94.990	ENSMPUG00000005772	RIOK3	100	94.990	Mustela_putorius_furo
ENSRNOG00000023376	Riok3	99	94.563	ENSMLUG00000007081	RIOK3	99	94.563	Myotis_lucifugus
ENSRNOG00000023376	Riok3	99	95.728	ENSNGAG00000011446	Riok3	99	95.728	Nannospalax_galili
ENSRNOG00000023376	Riok3	75	72.596	ENSNBRG00000016677	riok3	83	71.505	Neolamprologus_brichardi
ENSRNOG00000023376	Riok3	100	94.412	ENSNLEG00000006758	RIOK3	100	94.412	Nomascus_leucogenys
ENSRNOG00000023376	Riok3	100	89.423	ENSMEUG00000006292	RIOK3	100	89.423	Notamacropus_eugenii
ENSRNOG00000023376	Riok3	100	93.449	ENSOPRG00000004803	RIOK3	100	93.449	Ochotona_princeps
ENSRNOG00000023376	Riok3	100	93.642	ENSODEG00000006444	RIOK3	100	93.642	Octodon_degus
ENSRNOG00000023376	Riok3	95	72.255	ENSONIG00000013422	riok3	99	71.600	Oreochromis_niloticus
ENSRNOG00000023376	Riok3	93	89.691	ENSOANG00000012074	RIOK3	99	89.691	Ornithorhynchus_anatinus
ENSRNOG00000023376	Riok3	100	94.990	ENSOCUG00000016820	RIOK3	100	94.990	Oryctolagus_cuniculus
ENSRNOG00000023376	Riok3	97	72.366	ENSORLG00000003395	riok3	98	72.167	Oryzias_latipes
ENSRNOG00000023376	Riok3	97	72.167	ENSORLG00020000672	riok3	98	71.968	Oryzias_latipes_hni
ENSRNOG00000023376	Riok3	97	72.366	ENSORLG00015007372	riok3	98	72.167	Oryzias_latipes_hsok
ENSRNOG00000023376	Riok3	97	71.968	ENSOMEG00000001380	riok3	98	71.571	Oryzias_melastigma
ENSRNOG00000023376	Riok3	99	96.318	ENSOGAG00000014502	RIOK3	89	96.318	Otolemur_garnettii
ENSRNOG00000023376	Riok3	100	95.183	ENSOARG00000008042	RIOK3	100	95.183	Ovis_aries
ENSRNOG00000023376	Riok3	100	94.220	ENSPPAG00000030258	RIOK3	100	94.220	Pan_paniscus
ENSRNOG00000023376	Riok3	100	95.568	ENSPPRG00000023302	RIOK3	100	95.568	Panthera_pardus
ENSRNOG00000023376	Riok3	100	95.568	ENSPTIG00000000960	RIOK3	100	95.568	Panthera_tigris_altaica
ENSRNOG00000023376	Riok3	100	94.027	ENSPTRG00000009918	RIOK3	100	94.027	Pan_troglodytes
ENSRNOG00000023376	Riok3	100	94.220	ENSPANG00000011485	RIOK3	100	94.220	Papio_anubis
ENSRNOG00000023376	Riok3	96	77.510	ENSPKIG00000018297	riok3	97	76.908	Paramormyrops_kingsleyae
ENSRNOG00000023376	Riok3	100	83.877	ENSPSIG00000006250	RIOK3	100	83.877	Pelodiscus_sinensis
ENSRNOG00000023376	Riok3	92	72.822	ENSPMGG00000009414	riok3	99	72.292	Periophthalmus_magnuspinnatus
ENSRNOG00000023376	Riok3	100	95.954	ENSPEMG00000023794	Riok3	100	95.954	Peromyscus_maniculatus_bairdii
ENSRNOG00000023376	Riok3	83	71.594	ENSPMAG00000003258	riok3	97	71.594	Petromyzon_marinus
ENSRNOG00000023376	Riok3	93	90.456	ENSPCIG00000013991	RIOK3	100	90.456	Phascolarctos_cinereus
ENSRNOG00000023376	Riok3	93	74.127	ENSPFOG00000024127	riok3	97	72.144	Poecilia_formosa
ENSRNOG00000023376	Riok3	93	73.523	ENSPLAG00000004956	riok3	97	71.856	Poecilia_latipinna
ENSRNOG00000023376	Riok3	93	74.127	ENSPMEG00000020108	riok3	97	71.856	Poecilia_mexicana
ENSRNOG00000023376	Riok3	99	70.633	ENSPREG00000010010	riok3	99	70.250	Poecilia_reticulata
ENSRNOG00000023376	Riok3	100	88.054	ENSPPYG00000009062	RIOK3	100	88.054	Pongo_abelii
ENSRNOG00000023376	Riok3	77	91.144	ENSPCAG00000001021	RIOK3	76	91.144	Procavia_capensis
ENSRNOG00000023376	Riok3	100	95.376	ENSPCOG00000022631	RIOK3	100	95.376	Propithecus_coquereli
ENSRNOG00000023376	Riok3	100	79.961	ENSPVAG00000015817	RIOK3	100	79.961	Pteropus_vampyrus
ENSRNOG00000023376	Riok3	99	71.429	ENSPNYG00000003271	riok3	99	71.042	Pundamilia_nyererei
ENSRNOG00000023376	Riok3	99	73.423	ENSPNAG00000006213	riok3	99	73.129	Pygocentrus_nattereri
ENSRNOG00000023376	Riok3	100	93.834	ENSRBIG00000035071	RIOK3	100	93.834	Rhinopithecus_bieti
ENSRNOG00000023376	Riok3	100	93.642	ENSRROG00000045710	RIOK3	100	93.642	Rhinopithecus_roxellana
ENSRNOG00000023376	Riok3	100	94.605	ENSSBOG00000034387	RIOK3	100	94.605	Saimiri_boliviensis_boliviensis
ENSRNOG00000023376	Riok3	100	90.192	ENSSHAG00000011854	RIOK3	100	90.192	Sarcophilus_harrisii
ENSRNOG00000023376	Riok3	99	74.038	ENSSFOG00015012912	riok3	97	75.709	Scleropages_formosus
ENSRNOG00000023376	Riok3	99	71.401	ENSSMAG00000011527	riok3	99	70.906	Scophthalmus_maximus
ENSRNOG00000023376	Riok3	99	72.115	ENSSDUG00000016018	riok3	99	71.291	Seriola_dumerili
ENSRNOG00000023376	Riok3	58	81.707	ENSSLDG00000022246	riok3	93	77.222	Seriola_lalandi_dorsalis
ENSRNOG00000023376	Riok3	87	95.572	ENSSARG00000010154	RIOK3	87	95.572	Sorex_araneus
ENSRNOG00000023376	Riok3	99	86.293	ENSSPUG00000015246	RIOK3	99	86.293	Sphenodon_punctatus
ENSRNOG00000023376	Riok3	99	71.346	ENSSPAG00000000601	riok3	99	70.906	Stegastes_partitus
ENSRNOG00000023376	Riok3	100	94.990	ENSSSCG00000029518	RIOK3	100	96.372	Sus_scrofa
ENSRNOG00000023376	Riok3	96	85.944	ENSTGUG00000010392	RIOK3	99	84.393	Taeniopygia_guttata
ENSRNOG00000023376	Riok3	99	70.577	ENSTRUG00000007055	riok3	99	68.679	Takifugu_rubripes
ENSRNOG00000023376	Riok3	93	68.107	ENSTNIG00000001855	riok3	99	67.423	Tetraodon_nigroviridis
ENSRNOG00000023376	Riok3	55	100.000	ENSTBEG00000015851	RIOK3	55	100.000	Tupaia_belangeri
ENSRNOG00000023376	Riok3	100	93.834	ENSTTRG00000008839	RIOK3	100	93.834	Tursiops_truncatus
ENSRNOG00000023376	Riok3	100	94.412	ENSUAMG00000018410	RIOK3	100	94.412	Ursus_americanus
ENSRNOG00000023376	Riok3	98	95.108	ENSUMAG00000020218	RIOK3	97	95.108	Ursus_maritimus
ENSRNOG00000023376	Riok3	100	95.183	ENSVPAG00000009034	RIOK3	100	95.183	Vicugna_pacos
ENSRNOG00000023376	Riok3	100	94.798	ENSVVUG00000003651	RIOK3	76	94.798	Vulpes_vulpes
ENSRNOG00000023376	Riok3	99	76.255	ENSXETG00000027370	riok3	99	76.255	Xenopus_tropicalis
ENSRNOG00000023376	Riok3	95	72.177	ENSXCOG00000001032	riok3	99	71.573	Xiphophorus_couchianus
ENSRNOG00000023376	Riok3	95	72.056	ENSXMAG00000012902	riok3	97	71.657	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0004674	protein serine/threonine kinase activity	21873635.	IBA	Function
GO:0004674	protein serine/threonine kinase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006468	protein phosphorylation	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030490	maturation of SSU-rRNA	-	ISO	Process
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0030688	preribosome, small subunit precursor	-	ISO	Component
GO:0032463	negative regulation of protein homooligomerization	-	IEA	Process
GO:0032463	negative regulation of protein homooligomerization	-	ISO	Process
GO:0032728	positive regulation of interferon-beta production	-	IEA	Process
GO:0032728	positive regulation of interferon-beta production	-	ISO	Process
GO:0039534	negative regulation of MDA-5 signaling pathway	-	IEA	Process
GO:0039534	negative regulation of MDA-5 signaling pathway	-	ISO	Process
GO:0043124	negative regulation of I-kappaB kinase/NF-kappaB signaling	-	IEA	Process
GO:0043124	negative regulation of I-kappaB kinase/NF-kappaB signaling	-	ISO	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0045089	positive regulation of innate immune response	-	IEA	Process
GO:0045089	positive regulation of innate immune response	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0071359	cellular response to dsRNA	-	IEA	Process
GO:0071359	cellular response to dsRNA	-	ISO	Process
GO:0089720	caspase binding	-	IEA	Function
GO:0089720	caspase binding	-	ISO	Function
GO:0098586	cellular response to virus	-	IEA	Process
GO:0098586	cellular response to virus	-	ISO	Process
GO:1990786	cellular response to dsDNA	-	IEA	Process
GO:1990786	cellular response to dsDNA	-	ISO	Process