EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRNOG00000023593 (Gene tree)
Gene ID: -
Gene Symbol: Upf2
Alias: LOC361271
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 111544 bases
Position: chr17:76175643-76287186
Accession: 1309178
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000054878	Upf2	PF04050.14	4.9e-18	1	1
ENSRNOP00000075770	Upf2	PF04050.14	2.9e-09	1	1
ENSRNOP00000054878	MIF4G	PF02854.19	2.5e-76	1	3
ENSRNOP00000054878	MIF4G	PF02854.19	2.5e-76	2	3
ENSRNOP00000054878	MIF4G	PF02854.19	2.5e-76	3	3
ENSRNOP00000075795	MIF4G	PF02854.19	1.4e-72	1	2
ENSRNOP00000075795	MIF4G	PF02854.19	1.4e-72	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000092693	-	1721	-	ENSRNOP00000075795	574 (aa)	-	A0A0U1RRS6
ENSRNOT00000092442	-	1521	-	ENSRNOP00000075770	90 (aa)	-	A0A0U1RRQ4
ENSRNOT00000058070	-	3819	-	ENSRNOP00000054878	1272 (aa)	-	D3ZT03
ENSRNOT00000092452	-	1564	-	ENSRNOP00000075866	499 (aa)	-	A0A0U1RRY8

Gene Model

Click here to download ENSRNOG00000023593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023593's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000023593	Upf2	100	100.000	ENSG00000151461	UPF2	99	90.667	Homo_sapiens
ENSRNOG00000023593	Upf2	98	94.318	ENSAPOG00000015837	UPF2	100	74.415	Acanthochromis_polyacanthus
ENSRNOG00000023593	Upf2	100	98.889	ENSAMEG00000004586	UPF2	99	91.601	Ailuropoda_melanoleuca
ENSRNOG00000023593	Upf2	98	94.318	ENSACIG00000018078	UPF2	100	78.521	Amphilophus_citrinellus
ENSRNOG00000023593	Upf2	100	94.444	ENSAOCG00000016766	UPF2	99	78.616	Amphiprion_ocellaris
ENSRNOG00000023593	Upf2	100	94.444	ENSAPEG00000019084	UPF2	99	78.694	Amphiprion_percula
ENSRNOG00000023593	Upf2	100	94.444	ENSATEG00000021677	UPF2	99	78.632	Anabas_testudineus
ENSRNOG00000023593	Upf2	100	97.778	ENSAPLG00000010287	UPF2	90	86.123	Anas_platyrhynchos
ENSRNOG00000023593	Upf2	100	98.889	ENSACAG00000009259	UPF2	99	86.656	Anolis_carolinensis
ENSRNOG00000023593	Upf2	98	100.000	ENSANAG00000028451	UPF2	99	79.702	Aotus_nancymaae
ENSRNOG00000023593	Upf2	100	94.444	ENSACLG00000012696	UPF2	99	78.755	Astatotilapia_calliptera
ENSRNOG00000023593	Upf2	98	95.455	ENSAMXG00000013700	UPF2	99	79.391	Astyanax_mexicanus
ENSRNOG00000023593	Upf2	100	100.000	ENSBTAG00000000288	UPF2	99	91.444	Bos_taurus
ENSRNOG00000023593	Upf2	100	100.000	ENSCJAG00000020685	UPF2	99	89.874	Callithrix_jacchus
ENSRNOG00000023593	Upf2	100	100.000	ENSCAFG00000004839	UPF2	99	91.523	Canis_familiaris
ENSRNOG00000023593	Upf2	98	100.000	ENSCAFG00020005882	UPF2	98	93.978	Canis_lupus_dingo
ENSRNOG00000023593	Upf2	100	100.000	ENSCHIG00000020359	UPF2	99	91.523	Capra_hircus
ENSRNOG00000023593	Upf2	100	100.000	ENSTSYG00000000935	UPF2	97	93.287	Carlito_syrichta
ENSRNOG00000023593	Upf2	95	87.067	ENSCAPG00000016658	UPF2	95	81.475	Cavia_aperea
ENSRNOG00000023593	Upf2	98	100.000	ENSCPOG00000008809	UPF2	100	88.950	Cavia_porcellus
ENSRNOG00000023593	Upf2	100	100.000	ENSCCAG00000035991	UPF2	99	84.537	Cebus_capucinus
ENSRNOG00000023593	Upf2	100	100.000	ENSCATG00000032679	UPF2	99	90.824	Cercocebus_atys
ENSRNOG00000023593	Upf2	100	100.000	ENSCLAG00000011434	UPF2	99	90.659	Chinchilla_lanigera
ENSRNOG00000023593	Upf2	100	100.000	ENSCSAG00000013372	UPF2	99	90.824	Chlorocebus_sabaeus
ENSRNOG00000023593	Upf2	97	100.000	ENSCHOG00000000422	UPF2	88	93.333	Choloepus_hoffmanni
ENSRNOG00000023593	Upf2	98	100.000	ENSCPBG00000027823	UPF2	100	87.677	Chrysemys_picta_bellii
ENSRNOG00000023593	Upf2	99	55.017	ENSCSAVG00000007772	-	99	47.685	Ciona_savignyi
ENSRNOG00000023593	Upf2	99	92.548	ENSCANG00000040396	UPF2	100	84.969	Colobus_angolensis_palliatus
ENSRNOG00000023593	Upf2	100	100.000	ENSCGRG00001019347	Upf2	99	93.082	Cricetulus_griseus_chok1gshd
ENSRNOG00000023593	Upf2	100	100.000	ENSCGRG00000017993	Upf2	99	93.082	Cricetulus_griseus_crigri
ENSRNOG00000023593	Upf2	100	95.556	ENSCSEG00000003520	UPF2	71	82.724	Cynoglossus_semilaevis
ENSRNOG00000023593	Upf2	100	93.333	ENSCVAG00000006167	UPF2	100	77.648	Cyprinodon_variegatus
ENSRNOG00000023593	Upf2	79	80.131	ENSDARG00000111388	CABZ01068469.1	88	81.439	Danio_rerio
ENSRNOG00000023593	Upf2	100	98.889	ENSDNOG00000018160	UPF2	99	91.444	Dasypus_novemcinctus
ENSRNOG00000023593	Upf2	100	100.000	ENSDORG00000002478	Upf2	99	91.752	Dipodomys_ordii
ENSRNOG00000023593	Upf2	92	42.391	FBgn0029992	Upf2	82	39.262	Drosophila_melanogaster
ENSRNOG00000023593	Upf2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSRNOG00000023593	Upf2	98	84.091	ENSEBUG00000012448	-	86	67.958	Eptatretus_burgeri
ENSRNOG00000023593	Upf2	100	100.000	ENSEASG00005019274	UPF2	99	90.221	Equus_asinus_asinus
ENSRNOG00000023593	Upf2	100	100.000	ENSECAG00000017022	UPF2	99	90.816	Equus_caballus
ENSRNOG00000023593	Upf2	100	100.000	ENSEEUG00000007819	UPF2	77	91.200	Erinaceus_europaeus
ENSRNOG00000023593	Upf2	99	94.382	ENSELUG00000012014	UPF2	99	78.003	Esox_lucius
ENSRNOG00000023593	Upf2	100	100.000	ENSFCAG00000005785	UPF2	99	91.287	Felis_catus
ENSRNOG00000023593	Upf2	100	100.000	ENSFALG00000001889	UPF2	98	88.069	Ficedula_albicollis
ENSRNOG00000023593	Upf2	100	100.000	ENSFDAG00000014348	UPF2	99	90.888	Fukomys_damarensis
ENSRNOG00000023593	Upf2	100	93.333	ENSFHEG00000009826	UPF2	99	78.442	Fundulus_heteroclitus
ENSRNOG00000023593	Upf2	98	95.455	ENSGMOG00000005557	UPF2	100	76.923	Gadus_morhua
ENSRNOG00000023593	Upf2	100	100.000	ENSGALG00000033772	UPF2	99	88.540	Gallus_gallus
ENSRNOG00000023593	Upf2	100	93.333	ENSGAFG00000020867	UPF2	99	77.108	Gambusia_affinis
ENSRNOG00000023593	Upf2	98	93.182	ENSGACG00000001080	UPF2	100	78.132	Gasterosteus_aculeatus
ENSRNOG00000023593	Upf2	100	100.000	ENSGAGG00000002700	UPF2	99	88.428	Gopherus_agassizii
ENSRNOG00000023593	Upf2	100	100.000	ENSGGOG00000001479	UPF2	99	90.667	Gorilla_gorilla
ENSRNOG00000023593	Upf2	98	94.318	ENSHBUG00000004249	UPF2	100	78.755	Haplochromis_burtoni
ENSRNOG00000023593	Upf2	100	100.000	ENSHGLG00000015176	-	99	90.502	Heterocephalus_glaber_female
ENSRNOG00000023593	Upf2	99	96.629	ENSHGLG00000003822	-	99	78.869	Heterocephalus_glaber_female
ENSRNOG00000023593	Upf2	98	100.000	ENSHGLG00100010036	UPF2	100	87.745	Heterocephalus_glaber_male
ENSRNOG00000023593	Upf2	100	94.444	ENSHCOG00000004025	UPF2	99	76.375	Hippocampus_comes
ENSRNOG00000023593	Upf2	100	95.556	ENSIPUG00000015524	UPF2	99	78.477	Ictalurus_punctatus
ENSRNOG00000023593	Upf2	100	100.000	ENSSTOG00000013075	UPF2	99	92.223	Ictidomys_tridecemlineatus
ENSRNOG00000023593	Upf2	100	100.000	ENSJJAG00000004913	Upf2	99	90.966	Jaculus_jaculus
ENSRNOG00000023593	Upf2	100	93.333	ENSKMAG00000001071	UPF2	99	78.436	Kryptolebias_marmoratus
ENSRNOG00000023593	Upf2	100	94.444	ENSLBEG00000016394	-	99	78.866	Labrus_bergylta
ENSRNOG00000023593	Upf2	79	87.033	ENSLBEG00000000728	-	93	80.924	Labrus_bergylta
ENSRNOG00000023593	Upf2	98	100.000	ENSLACG00000015945	UPF2	100	75.078	Latimeria_chalumnae
ENSRNOG00000023593	Upf2	100	96.667	ENSLOCG00000015698	UPF2	99	81.191	Lepisosteus_oculatus
ENSRNOG00000023593	Upf2	100	100.000	ENSMFAG00000043865	UPF2	99	90.745	Macaca_fascicularis
ENSRNOG00000023593	Upf2	100	100.000	ENSMMUG00000008241	UPF2	99	90.745	Macaca_mulatta
ENSRNOG00000023593	Upf2	82	98.732	ENSMNEG00000008062	UPF2	99	93.255	Macaca_nemestrina
ENSRNOG00000023593	Upf2	88	88.608	ENSMNEG00000035275	-	80	71.345	Macaca_nemestrina
ENSRNOG00000023593	Upf2	100	100.000	ENSMLEG00000036120	UPF2	99	91.551	Mandrillus_leucophaeus
ENSRNOG00000023593	Upf2	100	94.444	ENSMAMG00000018276	UPF2	99	78.322	Mastacembelus_armatus
ENSRNOG00000023593	Upf2	100	94.444	ENSMZEG00005021595	UPF2	99	78.755	Maylandia_zebra
ENSRNOG00000023593	Upf2	99	98.876	ENSMGAG00000004573	UPF2	99	87.549	Meleagris_gallopavo
ENSRNOG00000023593	Upf2	100	100.000	ENSMAUG00000016512	Upf2	99	90.723	Mesocricetus_auratus
ENSRNOG00000023593	Upf2	98	100.000	ENSMICG00000001716	UPF2	99	93.775	Microcebus_murinus
ENSRNOG00000023593	Upf2	100	100.000	ENSMOCG00000008263	Upf2	99	91.903	Microtus_ochrogaster
ENSRNOG00000023593	Upf2	98	93.182	ENSMMOG00000006528	UPF2	100	76.521	Mola_mola
ENSRNOG00000023593	Upf2	100	100.000	ENSMODG00000016794	UPF2	99	89.717	Monodelphis_domestica
ENSRNOG00000023593	Upf2	98	94.318	ENSMALG00000002663	UPF2	100	78.705	Monopterus_albus
ENSRNOG00000023593	Upf2	100	100.000	MGP_CAROLIEiJ_G0023157	Upf2	99	92.531	Mus_caroli
ENSRNOG00000023593	Upf2	100	100.000	ENSMUSG00000043241	Upf2	99	92.689	Mus_musculus
ENSRNOG00000023593	Upf2	100	100.000	MGP_PahariEiJ_G0019217	Upf2	99	92.767	Mus_pahari
ENSRNOG00000023593	Upf2	100	100.000	MGP_SPRETEiJ_G0024075	Upf2	99	92.925	Mus_spretus
ENSRNOG00000023593	Upf2	100	100.000	ENSMPUG00000001064	UPF2	99	91.680	Mustela_putorius_furo
ENSRNOG00000023593	Upf2	98	100.000	ENSMLUG00000000228	UPF2	100	90.681	Myotis_lucifugus
ENSRNOG00000023593	Upf2	100	94.444	ENSNBRG00000013629	UPF2	99	78.755	Neolamprologus_brichardi
ENSRNOG00000023593	Upf2	100	100.000	ENSNLEG00000012058	UPF2	99	90.745	Nomascus_leucogenys
ENSRNOG00000023593	Upf2	100	98.889	ENSMEUG00000002180	-	59	96.923	Notamacropus_eugenii
ENSRNOG00000023593	Upf2	97	100.000	ENSOPRG00000006801	-	77	98.592	Ochotona_princeps
ENSRNOG00000023593	Upf2	100	100.000	ENSODEG00000001290	UPF2	99	90.502	Octodon_degus
ENSRNOG00000023593	Upf2	100	94.444	ENSONIG00000017991	UPF2	99	78.878	Oreochromis_niloticus
ENSRNOG00000023593	Upf2	82	96.596	ENSOANG00000019744	-	93	96.596	Ornithorhynchus_anatinus
ENSRNOG00000023593	Upf2	98	100.000	ENSOCUG00000006230	UPF2	100	90.164	Oryctolagus_cuniculus
ENSRNOG00000023593	Upf2	100	92.222	ENSORLG00000017189	UPF2	99	77.769	Oryzias_latipes
ENSRNOG00000023593	Upf2	100	92.222	ENSORLG00020005969	UPF2	99	77.769	Oryzias_latipes_hni
ENSRNOG00000023593	Upf2	100	92.222	ENSORLG00015005713	UPF2	99	77.769	Oryzias_latipes_hsok
ENSRNOG00000023593	Upf2	100	90.000	ENSOMEG00000023420	UPF2	98	75.156	Oryzias_melastigma
ENSRNOG00000023593	Upf2	100	100.000	ENSOGAG00000005796	UPF2	99	91.287	Otolemur_garnettii
ENSRNOG00000023593	Upf2	100	100.000	ENSOARG00000014587	UPF2	99	91.379	Ovis_aries
ENSRNOG00000023593	Upf2	98	100.000	ENSPPAG00000037953	UPF2	100	88.148	Pan_paniscus
ENSRNOG00000023593	Upf2	100	100.000	ENSPPRG00000000690	UPF2	99	91.287	Panthera_pardus
ENSRNOG00000023593	Upf2	100	100.000	ENSPTIG00000008867	UPF2	99	91.287	Panthera_tigris_altaica
ENSRNOG00000023593	Upf2	100	100.000	ENSPTRG00000002291	UPF2	99	90.667	Pan_troglodytes
ENSRNOG00000023593	Upf2	100	100.000	ENSPANG00000023399	UPF2	99	90.824	Papio_anubis
ENSRNOG00000023593	Upf2	100	93.333	ENSPKIG00000025502	UPF2	99	76.881	Paramormyrops_kingsleyae
ENSRNOG00000023593	Upf2	59	88.609	ENSPSIG00000015158	UPF2	95	88.609	Pelodiscus_sinensis
ENSRNOG00000023593	Upf2	98	92.045	ENSPMGG00000005259	UPF2	100	77.248	Periophthalmus_magnuspinnatus
ENSRNOG00000023593	Upf2	93	98.834	ENSPEMG00000015731	Upf2	99	98.834	Peromyscus_maniculatus_bairdii
ENSRNOG00000023593	Upf2	100	100.000	ENSPCIG00000006656	UPF2	100	89.560	Phascolarctos_cinereus
ENSRNOG00000023593	Upf2	100	93.333	ENSPFOG00000017118	UPF2	99	77.494	Poecilia_formosa
ENSRNOG00000023593	Upf2	100	93.333	ENSPLAG00000005094	UPF2	99	77.494	Poecilia_latipinna
ENSRNOG00000023593	Upf2	100	93.333	ENSPMEG00000017009	UPF2	99	77.494	Poecilia_mexicana
ENSRNOG00000023593	Upf2	98	93.182	ENSPREG00000021880	UPF2	100	77.632	Poecilia_reticulata
ENSRNOG00000023593	Upf2	100	100.000	ENSPPYG00000002089	-	99	88.319	Pongo_abelii
ENSRNOG00000023593	Upf2	100	100.000	ENSPCAG00000000684	UPF2	99	77.394	Procavia_capensis
ENSRNOG00000023593	Upf2	98	100.000	ENSPCOG00000021656	UPF2	100	88.295	Propithecus_coquereli
ENSRNOG00000023593	Upf2	100	100.000	ENSPVAG00000017286	UPF2	99	83.922	Pteropus_vampyrus
ENSRNOG00000023593	Upf2	98	94.318	ENSPNYG00000017096	UPF2	100	76.342	Pundamilia_nyererei
ENSRNOG00000023593	Upf2	100	95.556	ENSPNAG00000009357	UPF2	99	79.969	Pygocentrus_nattereri
ENSRNOG00000023593	Upf2	99	99.127	ENSRBIG00000037780	UPF2	100	90.338	Rhinopithecus_bieti
ENSRNOG00000023593	Upf2	100	100.000	ENSRROG00000043547	UPF2	99	91.209	Rhinopithecus_roxellana
ENSRNOG00000023593	Upf2	100	100.000	ENSSBOG00000020012	UPF2	99	90.338	Saimiri_boliviensis_boliviensis
ENSRNOG00000023593	Upf2	100	95.556	ENSSFOG00015023788	upf2	100	78.037	Scleropages_formosus
ENSRNOG00000023593	Upf2	100	95.556	ENSSMAG00000007637	UPF2	100	75.270	Scophthalmus_maximus
ENSRNOG00000023593	Upf2	100	94.444	ENSSDUG00000017244	UPF2	99	78.460	Seriola_dumerili
ENSRNOG00000023593	Upf2	98	94.318	ENSSLDG00000016866	UPF2	82	82.203	Seriola_lalandi_dorsalis
ENSRNOG00000023593	Upf2	100	98.889	ENSSARG00000008615	UPF2	99	89.238	Sorex_araneus
ENSRNOG00000023593	Upf2	99	100.000	ENSSPUG00000014544	UPF2	99	84.694	Sphenodon_punctatus
ENSRNOG00000023593	Upf2	98	94.318	ENSSPAG00000010479	-	79	69.608	Stegastes_partitus
ENSRNOG00000023593	Upf2	100	100.000	ENSSSCG00000011117	-	99	88.876	Sus_scrofa
ENSRNOG00000023593	Upf2	58	94.643	ENSTGUG00000015714	-	100	85.025	Taeniopygia_guttata
ENSRNOG00000023593	Upf2	97	100.000	ENSTGUG00000002163	-	100	87.903	Taeniopygia_guttata
ENSRNOG00000023593	Upf2	100	94.444	ENSTRUG00000007519	UPF2	99	78.149	Takifugu_rubripes
ENSRNOG00000023593	Upf2	100	94.444	ENSTNIG00000004453	UPF2	94	79.337	Tetraodon_nigroviridis
ENSRNOG00000023593	Upf2	99	85.035	ENSTBEG00000012679	UPF2	93	84.193	Tupaia_belangeri
ENSRNOG00000023593	Upf2	100	100.000	ENSTTRG00000016388	UPF2	99	90.659	Tursiops_truncatus
ENSRNOG00000023593	Upf2	98	100.000	ENSUAMG00000023560	UPF2	98	100.000	Ursus_americanus
ENSRNOG00000023593	Upf2	100	100.000	ENSUMAG00000012953	UPF2	95	91.523	Ursus_maritimus
ENSRNOG00000023593	Upf2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSRNOG00000023593	Upf2	100	100.000	ENSVVUG00000006166	UPF2	99	91.444	Vulpes_vulpes
ENSRNOG00000023593	Upf2	100	98.889	ENSXETG00000033103	UPF2	91	84.509	Xenopus_tropicalis
ENSRNOG00000023593	Upf2	98	93.182	ENSXCOG00000011604	UPF2	100	77.108	Xiphophorus_couchianus
ENSRNOG00000023593	Upf2	100	93.333	ENSXMAG00000017209	UPF2	99	77.185	Xiphophorus_maculatus