EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000023605 (Gene tree)
Gene ID
298075
Gene Symbol
Ncbp1
Alias
CBP80|LOC298075|MGC105807
Full Name
nuclear cap binding protein subunit 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
32364 bases
Position
chr5:61734118-61766481
Accession
1308973
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000038713MIF4G_likePF09088.114.4e-3511
ENSRNOP00000038713MIF4G_like_2PF09090.113.3e-8411
ENSRNOP00000038713MIF4GPF02854.192.5e-3111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000030825-2824XM_006238037ENSRNOP00000038713790 (aa)XP_006238099Q56A27
Gene Model
Click here to download ENSRNOG00000023605's gene model file
Pathways
Pathway IDPathway NameSource
rno03013RNA transportKEGG
rno03015mRNA surveillance pathwayKEGG
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023605's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000023605Ncbp110098.101ENSG00000136937NCBP110098.101Homo_sapiens
ENSRNOG00000023605Ncbp19983.375ENSAPOG00000008002NCBP19982.997Acanthochromis_polyacanthus
ENSRNOG00000023605Ncbp110098.106ENSAMEG00000004763NCBP110098.106Ailuropoda_melanoleuca
ENSRNOG00000023605Ncbp19983.733ENSACIG00000000274NCBP19983.102Amphilophus_citrinellus
ENSRNOG00000023605Ncbp19983.501ENSAOCG00000021148NCBP19983.123Amphiprion_ocellaris
ENSRNOG00000023605Ncbp19983.501ENSAPEG00000001701NCBP19983.123Amphiprion_percula
ENSRNOG00000023605Ncbp19982.746ENSATEG00000006929NCBP19982.368Anabas_testudineus
ENSRNOG00000023605Ncbp19590.092ENSAPLG00000016318NCBP110090.225Anas_platyrhynchos
ENSRNOG00000023605Ncbp110086.392ENSACAG00000004409NCBP18786.267Anolis_carolinensis
ENSRNOG00000023605Ncbp110095.190ENSANAG00000025744NCBP19998.182Aotus_nancymaae
ENSRNOG00000023605Ncbp19982.997ENSACLG00000014812NCBP19982.961Astatotilapia_calliptera
ENSRNOG00000023605Ncbp19981.658ENSAMXG00000016364NCBP19981.156Astyanax_mexicanus
ENSRNOG00000023605Ncbp110097.975ENSBTAG00000009732NCBP110097.975Bos_taurus
ENSRNOG00000023605Ncbp19934.402WBGene00018156ncbp-19934.279Caenorhabditis_elegans
ENSRNOG00000023605Ncbp110098.354ENSCJAG00000010840NCBP110098.678Callithrix_jacchus
ENSRNOG00000023605Ncbp110098.228ENSCAFG00000002445NCBP110098.228Canis_familiaris
ENSRNOG00000023605Ncbp19997.465ENSCAFG00020017997NCBP110098.097Canis_lupus_dingo
ENSRNOG00000023605Ncbp110097.722ENSCHIG00000020139NCBP110097.722Capra_hircus
ENSRNOG00000023605Ncbp15296.845ENSTSYG00000011914NCBP19899.060Carlito_syrichta
ENSRNOG00000023605Ncbp18187.969ENSCAPG00000014252NCBP19087.812Cavia_aperea
ENSRNOG00000023605Ncbp19796.219ENSCPOG00000012573NCBP19996.219Cavia_porcellus
ENSRNOG00000023605Ncbp110098.228ENSCCAG00000032297NCBP110098.228Cebus_capucinus
ENSRNOG00000023605Ncbp110098.101ENSCATG00000010052NCBP110098.101Cercocebus_atys
ENSRNOG00000023605Ncbp110098.101ENSCLAG00000014339NCBP110098.101Chinchilla_lanigera
ENSRNOG00000023605Ncbp110098.101ENSCSAG00000010929NCBP110098.101Chlorocebus_sabaeus
ENSRNOG00000023605Ncbp19195.763ENSCHOG00000010332NCBP19195.763Choloepus_hoffmanni
ENSRNOG00000023605Ncbp110085.660ENSCPBG00000024344NCBP19990.139Chrysemys_picta_bellii
ENSRNOG00000023605Ncbp19953.553ENSCING00000008990-9853.299Ciona_intestinalis
ENSRNOG00000023605Ncbp19952.179ENSCSAVG00000005300-9953.927Ciona_savignyi
ENSRNOG00000023605Ncbp110098.101ENSCANG00000036913NCBP110098.101Colobus_angolensis_palliatus
ENSRNOG00000023605Ncbp110098.987ENSCGRG00001015771Ncbp110098.987Cricetulus_griseus_chok1gshd
ENSRNOG00000023605Ncbp19998.974ENSCGRG00000010311Ncbp110098.974Cricetulus_griseus_crigri
ENSRNOG00000023605Ncbp19982.494ENSCSEG00000012377NCBP19982.937Cynoglossus_semilaevis
ENSRNOG00000023605Ncbp19980.755ENSCVAG00000008795NCBP19981.384Cyprinodon_variegatus
ENSRNOG00000023605Ncbp110097.215ENSDNOG00000006885NCBP110097.215Dasypus_novemcinctus
ENSRNOG00000023605Ncbp110093.703ENSDORG00000013652Ncbp110093.703Dipodomys_ordii
ENSRNOG00000023605Ncbp110056.894FBgn0022942Cbp8010057.250Drosophila_melanogaster
ENSRNOG00000023605Ncbp18333.137FBgn0038887CG79078733.137Drosophila_melanogaster
ENSRNOG00000023605Ncbp18993.668ENSETEG00000009705NCBP18993.668Echinops_telfairi
ENSRNOG00000023605Ncbp110073.585ENSEBUG00000008386NCBP110073.208Eptatretus_burgeri
ENSRNOG00000023605Ncbp110097.722ENSEASG00005022795NCBP110097.722Equus_asinus_asinus
ENSRNOG00000023605Ncbp110097.848ENSECAG00000013847NCBP110097.848Equus_caballus
ENSRNOG00000023605Ncbp19593.360ENSEEUG00000015973NCBP19992.961Erinaceus_europaeus
ENSRNOG00000023605Ncbp19980.252ENSELUG00000022519NCBP19981.006Esox_lucius
ENSRNOG00000023605Ncbp110098.101ENSFCAG00000001206NCBP110098.101Felis_catus
ENSRNOG00000023605Ncbp19888.931ENSFALG00000001193NCBP110089.059Ficedula_albicollis
ENSRNOG00000023605Ncbp110097.848ENSFDAG00000010864NCBP110097.848Fukomys_damarensis
ENSRNOG00000023605Ncbp19982.138ENSFHEG00000000655NCBP19981.635Fundulus_heteroclitus
ENSRNOG00000023605Ncbp19979.245ENSGMOG00000008653NCBP19979.245Gadus_morhua
ENSRNOG00000023605Ncbp19890.116ENSGALG00000002087NCBP110089.660Gallus_gallus
ENSRNOG00000023605Ncbp19982.890ENSGAFG00000017787NCBP19982.763Gambusia_affinis
ENSRNOG00000023605Ncbp19981.681ENSGACG00000016772NCBP19881.305Gasterosteus_aculeatus
ENSRNOG00000023605Ncbp110088.302ENSGAGG00000019483NCBP19989.861Gopherus_agassizii
ENSRNOG00000023605Ncbp110098.101ENSGGOG00000001376NCBP110098.101Gorilla_gorilla
ENSRNOG00000023605Ncbp19982.997ENSHBUG00000020843NCBP19982.620Haplochromis_burtoni
ENSRNOG00000023605Ncbp110097.975ENSHGLG00000001882NCBP110097.975Heterocephalus_glaber_female
ENSRNOG00000023605Ncbp110085.606ENSHGLG00000018112-10085.606Heterocephalus_glaber_female
ENSRNOG00000023605Ncbp110085.354ENSHGLG00100017373-10085.354Heterocephalus_glaber_male
ENSRNOG00000023605Ncbp110097.975ENSHGLG00100013014NCBP110097.975Heterocephalus_glaber_male
ENSRNOG00000023605Ncbp17972.108ENSHCOG00000000204NCBP19272.108Hippocampus_comes
ENSRNOG00000023605Ncbp19981.887ENSIPUG00000007275ncbp19981.509Ictalurus_punctatus
ENSRNOG00000023605Ncbp110098.228ENSSTOG00000002695NCBP110098.228Ictidomys_tridecemlineatus
ENSRNOG00000023605Ncbp19982.368ENSKMAG00000003594NCBP19985.976Kryptolebias_marmoratus
ENSRNOG00000023605Ncbp19980.870ENSLBEG00000011661NCBP19980.373Labrus_bergylta
ENSRNOG00000023605Ncbp110079.726ENSLACG00000013955NCBP110079.229Latimeria_chalumnae
ENSRNOG00000023605Ncbp19971.945ENSLOCG00000009579NCBP19971.945Lepisosteus_oculatus
ENSRNOG00000023605Ncbp110097.722ENSLAFG00000005999NCBP110097.722Loxodonta_africana
ENSRNOG00000023605Ncbp110098.101ENSMFAG00000030994NCBP110098.101Macaca_fascicularis
ENSRNOG00000023605Ncbp19998.203ENSMMUG00000012281NCBP19998.203Macaca_mulatta
ENSRNOG00000023605Ncbp110098.101ENSMNEG00000042790NCBP110098.101Macaca_nemestrina
ENSRNOG00000023605Ncbp110098.101ENSMLEG00000030374NCBP110098.101Mandrillus_leucophaeus
ENSRNOG00000023605Ncbp19983.123ENSMAMG00000014806NCBP19982.620Mastacembelus_armatus
ENSRNOG00000023605Ncbp19982.997ENSMZEG00005003469NCBP19982.620Maylandia_zebra
ENSRNOG00000023605Ncbp19782.682ENSMZEG00005009290-9982.552Maylandia_zebra
ENSRNOG00000023605Ncbp19998.219ENSMAUG00000020583Ncbp19998.219Mesocricetus_auratus
ENSRNOG00000023605Ncbp110097.722ENSMICG00000012682NCBP110097.722Microcebus_murinus
ENSRNOG00000023605Ncbp110098.608ENSMOCG00000015818Ncbp110098.608Microtus_ochrogaster
ENSRNOG00000023605Ncbp19182.378ENSMMOG00000002610NCBP19982.238Mola_mola
ENSRNOG00000023605Ncbp110093.165ENSMODG00000003202NCBP19992.911Monodelphis_domestica
ENSRNOG00000023605Ncbp19982.368ENSMALG00000003547NCBP19981.864Monopterus_albus
ENSRNOG00000023605Ncbp110099.494MGP_CAROLIEiJ_G0025982Ncbp110099.494Mus_caroli
ENSRNOG00000023605Ncbp110099.494ENSMUSG00000028330Ncbp110099.494Mus_musculus
ENSRNOG00000023605Ncbp110099.873MGP_PahariEiJ_G0028318Ncbp110099.873Mus_pahari
ENSRNOG00000023605Ncbp110099.494MGP_SPRETEiJ_G0026945Ncbp110099.494Mus_spretus
ENSRNOG00000023605Ncbp110098.228ENSMPUG00000006399NCBP110098.228Mustela_putorius_furo
ENSRNOG00000023605Ncbp19997.047ENSMLUG00000015201NCBP110097.047Myotis_lucifugus
ENSRNOG00000023605Ncbp110098.734ENSNGAG00000014101Ncbp110098.734Nannospalax_galili
ENSRNOG00000023605Ncbp17386.784ENSNBRG00000014674NCBP19486.784Neolamprologus_brichardi
ENSRNOG00000023605Ncbp110098.101ENSNLEG00000016909NCBP110098.101Nomascus_leucogenys
ENSRNOG00000023605Ncbp18994.595ENSMEUG00000010672NCBP19092.793Notamacropus_eugenii
ENSRNOG00000023605Ncbp18491.525ENSOPRG00000002144-8891.525Ochotona_princeps
ENSRNOG00000023605Ncbp110097.848ENSODEG00000003232NCBP110097.848Octodon_degus
ENSRNOG00000023605Ncbp19982.997ENSONIG00000001502NCBP19982.620Oreochromis_niloticus
ENSRNOG00000023605Ncbp17995.024ENSOANG00000001918NCBP110095.024Ornithorhynchus_anatinus
ENSRNOG00000023605Ncbp19897.686ENSOCUG00000013853NCBP19797.686Oryctolagus_cuniculus
ENSRNOG00000023605Ncbp19981.203ENSORLG00000011008NCBP19980.827Oryzias_latipes
ENSRNOG00000023605Ncbp19981.203ENSORLG00020017455NCBP19980.827Oryzias_latipes_hni
ENSRNOG00000023605Ncbp19981.328ENSORLG00015012127NCBP19980.952Oryzias_latipes_hsok
ENSRNOG00000023605Ncbp19981.704ENSOMEG00000020698NCBP19981.579Oryzias_melastigma
ENSRNOG00000023605Ncbp110098.106ENSOGAG00000013888NCBP110098.106Otolemur_garnettii
ENSRNOG00000023605Ncbp110097.722ENSOARG00000011233NCBP110097.722Ovis_aries
ENSRNOG00000023605Ncbp110098.101ENSPPAG00000026462NCBP110098.101Pan_paniscus
ENSRNOG00000023605Ncbp110098.228ENSPPRG00000022574NCBP110098.228Panthera_pardus
ENSRNOG00000023605Ncbp110098.228ENSPTIG00000018507NCBP110098.228Panthera_tigris_altaica
ENSRNOG00000023605Ncbp110098.101ENSPTRG00000021167NCBP110098.101Pan_troglodytes
ENSRNOG00000023605Ncbp110098.101ENSPANG00000025591NCBP110098.101Papio_anubis
ENSRNOG00000023605Ncbp110080.755ENSPKIG00000015861NCBP110080.629Paramormyrops_kingsleyae
ENSRNOG00000023605Ncbp16488.086ENSPSIG00000009558NCBP110088.281Pelodiscus_sinensis
ENSRNOG00000023605Ncbp19979.345ENSPMGG00000020476NCBP19978.841Periophthalmus_magnuspinnatus
ENSRNOG00000023605Ncbp110098.734ENSPEMG00000020105Ncbp110098.734Peromyscus_maniculatus_bairdii
ENSRNOG00000023605Ncbp110067.544ENSPMAG00000005533NCBP110067.544Petromyzon_marinus
ENSRNOG00000023605Ncbp110092.911ENSPCIG00000015800NCBP19993.496Phascolarctos_cinereus
ENSRNOG00000023605Ncbp19981.955ENSPFOG00000004158NCBP19981.579Poecilia_formosa
ENSRNOG00000023605Ncbp19982.516ENSPLAG00000020002NCBP19982.013Poecilia_latipinna
ENSRNOG00000023605Ncbp19982.516ENSPMEG00000019821NCBP19982.013Poecilia_mexicana
ENSRNOG00000023605Ncbp19982.538ENSPREG00000006035NCBP19982.035Poecilia_reticulata
ENSRNOG00000023605Ncbp110098.101ENSPPYG00000019426NCBP110098.101Pongo_abelii
ENSRNOG00000023605Ncbp19089.124ENSPCAG00000009943NCBP19089.124Procavia_capensis
ENSRNOG00000023605Ncbp18298.026ENSPCOG00000020024NCBP19898.026Propithecus_coquereli
ENSRNOG00000023605Ncbp110097.595ENSPVAG00000005924NCBP110097.595Pteropus_vampyrus
ENSRNOG00000023605Ncbp19183.101ENSPNYG00000002140NCBP19982.961Pundamilia_nyererei
ENSRNOG00000023605Ncbp19981.910ENSPNAG00000027753NCBP19981.281Pygocentrus_nattereri
ENSRNOG00000023605Ncbp110098.101ENSRBIG00000043175NCBP110098.101Rhinopithecus_bieti
ENSRNOG00000023605Ncbp110098.101ENSRROG00000029767NCBP110098.101Rhinopithecus_roxellana
ENSRNOG00000023605Ncbp110098.228ENSSBOG00000019378NCBP110098.228Saimiri_boliviensis_boliviensis
ENSRNOG00000023605Ncbp16993.798ENSSHAG00000015882NCBP17393.774Sarcophilus_harrisii
ENSRNOG00000023605Ncbp19980.485ENSSFOG00015001872NCBP110080.127Scleropages_formosus
ENSRNOG00000023605Ncbp19981.234ENSSMAG00000007463NCBP19980.982Scophthalmus_maximus
ENSRNOG00000023605Ncbp19983.016ENSSDUG00000007019NCBP110082.442Seriola_dumerili
ENSRNOG00000023605Ncbp19982.746ENSSLDG00000021924NCBP19982.368Seriola_lalandi_dorsalis
ENSRNOG00000023605Ncbp18589.738ENSSARG00000007274NCBP18789.738Sorex_araneus
ENSRNOG00000023605Ncbp110081.519ENSSPUG00000008609NCBP110081.519Sphenodon_punctatus
ENSRNOG00000023605Ncbp19983.249ENSSPAG00000012550NCBP19982.872Stegastes_partitus
ENSRNOG00000023605Ncbp110097.975ENSSSCG00000005366NCBP110097.975Sus_scrofa
ENSRNOG00000023605Ncbp110083.270ENSTGUG00000001472NCBP110083.396Taeniopygia_guttata
ENSRNOG00000023605Ncbp19981.486ENSTRUG00000005287NCBP19981.108Takifugu_rubripes
ENSRNOG00000023605Ncbp110094.684ENSTBEG00000004035NCBP110094.684Tupaia_belangeri
ENSRNOG00000023605Ncbp18898.030ENSTTRG00000000507NCBP18898.030Tursiops_truncatus
ENSRNOG00000023605Ncbp110098.101ENSUAMG00000005471NCBP110098.101Ursus_americanus
ENSRNOG00000023605Ncbp19795.839ENSUMAG00000011865NCBP110098.097Ursus_maritimus
ENSRNOG00000023605Ncbp110093.797ENSVPAG00000010537NCBP110093.797Vicugna_pacos
ENSRNOG00000023605Ncbp110098.228ENSVVUG00000019725NCBP110098.228Vulpes_vulpes
ENSRNOG00000023605Ncbp110080.657ENSXETG00000010179ncbp110080.657Xenopus_tropicalis
ENSRNOG00000023605Ncbp19982.642ENSXMAG00000018253NCBP19982.138Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay21873635.IBAProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-ISOProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-ISSProcess
GO:0000245spliceosomal complex assembly-IEAProcess
GO:0000245spliceosomal complex assembly-ISOProcess
GO:0000339RNA cap binding21873635.IBAFunction
GO:0000340RNA 7-methylguanosine cap binding9933612.ICFunction
GO:0000340RNA 7-methylguanosine cap binding-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus9933612.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-IEAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005739mitochondrion-IEAComponent
GO:0005739mitochondrion-ISOComponent
GO:0005829cytosol-IEAComponent
GO:0005829cytosol-ISOComponent
GO:0005845mRNA cap binding complex21873635.IBAComponent
GO:0005845mRNA cap binding complex-ISOComponent
GO:0005845mRNA cap binding complex-ISSComponent
GO:0005846nuclear cap binding complex21873635.IBAComponent
GO:0005846nuclear cap binding complex9933612.IDAComponent
GO:00063707-methylguanosine mRNA capping-ISOProcess
GO:00063707-methylguanosine mRNA capping-ISSProcess
GO:0006406mRNA export from nucleus21873635.IBAProcess
GO:0006406mRNA export from nucleus-ISOProcess
GO:0006406mRNA export from nucleus-ISSProcess
GO:0006446regulation of translational initiation-ISOProcess
GO:0006446regulation of translational initiation-ISSProcess
GO:0008150biological_process-NDProcess
GO:0030307positive regulation of cell growth-ISOProcess
GO:0030307positive regulation of cell growth-ISSProcess
GO:0031053primary miRNA processing21873635.IBAProcess
GO:0031442positive regulation of mRNA 3'-end processing-ISOProcess
GO:0031442positive regulation of mRNA 3'-end processing-ISSProcess
GO:0034518RNA cap binding complex-ISOComponent
GO:0045292mRNA cis splicing, via spliceosome-IEAProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-IEAProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0098789pre-mRNA cleavage required for polyadenylation-ISOProcess
GO:0098789pre-mRNA cleavage required for polyadenylation-ISSProcess
GO:1900363regulation of mRNA polyadenylation-ISOProcess
GO:1900363regulation of mRNA polyadenylation-ISSProcess
GO:1905216positive regulation of RNA binding-IEAProcess
GO:1905216positive regulation of RNA binding-ISOProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent
GO:1990904ribonucleoprotein complex-ISOComponent
GO:1990904ribonucleoprotein complex-ISSComponent

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