EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000023639 (Gene tree)
Gene ID: 287148
Gene Symbol: Rpusd1
Alias: LOC287148|RGD1304934
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 3952 bases
Position: chr10:15099009-15102960
Accession: 1304934
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000015206	PseudoU_synth_2	PF00849.22	4.5e-25	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000015206	-	1866	XM_006245937	ENSRNOP00000015206	306 (aa)	XP_006245999	B1WC14

Gene Model

Click here to download ENSRNOG00000023639's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023639's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000023639	Rpusd1	100	81.731	ENSG00000007376	RPUSD1	100	86.905	Homo_sapiens
ENSRNOG00000023639	Rpusd1	98	57.616	ENSAPOG00000022221	rpusd1	98	57.616	Acanthochromis_polyacanthus
ENSRNOG00000023639	Rpusd1	100	83.987	ENSAMEG00000007461	RPUSD1	100	83.987	Ailuropoda_melanoleuca
ENSRNOG00000023639	Rpusd1	98	58.497	ENSACIG00000015863	rpusd1	98	58.497	Amphilophus_citrinellus
ENSRNOG00000023639	Rpusd1	98	57.377	ENSAOCG00000021975	rpusd1	95	57.377	Amphiprion_ocellaris
ENSRNOG00000023639	Rpusd1	98	57.705	ENSAPEG00000001316	rpusd1	95	57.705	Amphiprion_percula
ENSRNOG00000023639	Rpusd1	83	64.822	ENSATEG00000002984	rpusd1	98	58.361	Anabas_testudineus
ENSRNOG00000023639	Rpusd1	78	60.081	ENSAPLG00000012316	RPUSD1	100	59.677	Anas_platyrhynchos
ENSRNOG00000023639	Rpusd1	99	68.977	ENSACAG00000008953	RPUSD1	100	68.977	Anolis_carolinensis
ENSRNOG00000023639	Rpusd1	100	82.372	ENSANAG00000024709	RPUSD1	100	83.013	Aotus_nancymaae
ENSRNOG00000023639	Rpusd1	98	58.632	ENSACLG00000013692	rpusd1	98	57.792	Astatotilapia_calliptera
ENSRNOG00000023639	Rpusd1	99	59.736	ENSAMXG00000019802	rpusd1	100	59.736	Astyanax_mexicanus
ENSRNOG00000023639	Rpusd1	100	84.740	ENSBTAG00000000179	RPUSD1	100	85.714	Bos_taurus
ENSRNOG00000023639	Rpusd1	100	82.372	ENSCJAG00000012253	RPUSD1	100	82.692	Callithrix_jacchus
ENSRNOG00000023639	Rpusd1	100	84.641	ENSCAFG00000019614	RPUSD1	100	84.967	Canis_familiaris
ENSRNOG00000023639	Rpusd1	100	84.641	ENSCAFG00020008891	RPUSD1	100	84.967	Canis_lupus_dingo
ENSRNOG00000023639	Rpusd1	100	84.740	ENSCHIG00000012872	RPUSD1	100	85.714	Capra_hircus
ENSRNOG00000023639	Rpusd1	100	83.987	ENSTSYG00000036934	RPUSD1	100	83.172	Carlito_syrichta
ENSRNOG00000023639	Rpusd1	100	88.562	ENSCAPG00000014219	RPUSD1	100	88.562	Cavia_aperea
ENSRNOG00000023639	Rpusd1	100	88.562	ENSCPOG00000034604	RPUSD1	100	88.562	Cavia_porcellus
ENSRNOG00000023639	Rpusd1	100	82.692	ENSCCAG00000034385	RPUSD1	100	83.013	Cebus_capucinus
ENSRNOG00000023639	Rpusd1	100	83.333	ENSCATG00000042983	RPUSD1	100	83.654	Cercocebus_atys
ENSRNOG00000023639	Rpusd1	100	87.255	ENSCLAG00000013966	RPUSD1	100	87.255	Chinchilla_lanigera
ENSRNOG00000023639	Rpusd1	100	83.333	ENSCSAG00000012121	RPUSD1	100	83.654	Chlorocebus_sabaeus
ENSRNOG00000023639	Rpusd1	99	66.447	ENSCPBG00000021101	RPUSD1	99	66.118	Chrysemys_picta_bellii
ENSRNOG00000023639	Rpusd1	92	85.765	ENSCANG00000028576	RPUSD1	97	86.813	Colobus_angolensis_palliatus
ENSRNOG00000023639	Rpusd1	100	91.830	ENSCGRG00001014253	Rpusd1	100	91.830	Cricetulus_griseus_chok1gshd
ENSRNOG00000023639	Rpusd1	100	91.830	ENSCGRG00000017995	Rpusd1	100	91.830	Cricetulus_griseus_crigri
ENSRNOG00000023639	Rpusd1	99	56.209	ENSCSEG00000018512	rpusd1	100	56.106	Cynoglossus_semilaevis
ENSRNOG00000023639	Rpusd1	98	57.756	ENSCVAG00000022746	rpusd1	98	57.756	Cyprinodon_variegatus
ENSRNOG00000023639	Rpusd1	99	62.376	ENSDARG00000060192	rpusd1	100	61.765	Danio_rerio
ENSRNOG00000023639	Rpusd1	100	80.449	ENSDNOG00000003721	RPUSD1	100	81.090	Dasypus_novemcinctus
ENSRNOG00000023639	Rpusd1	100	88.562	ENSDORG00000026656	Rpusd1	100	88.235	Dipodomys_ordii
ENSRNOG00000023639	Rpusd1	99	45.597	ENSEBUG00000008767	rpusd1	94	45.597	Eptatretus_burgeri
ENSRNOG00000023639	Rpusd1	100	82.278	ENSEASG00005018421	RPUSD1	76	82.595	Equus_asinus_asinus
ENSRNOG00000023639	Rpusd1	83	59.843	ENSELUG00000014307	rpusd1	88	52.366	Esox_lucius
ENSRNOG00000023639	Rpusd1	100	82.680	ENSFCAG00000010359	RPUSD1	100	82.353	Felis_catus
ENSRNOG00000023639	Rpusd1	99	67.987	ENSFALG00000003211	RPUSD1	100	67.327	Ficedula_albicollis
ENSRNOG00000023639	Rpusd1	100	87.908	ENSFDAG00000013398	RPUSD1	100	87.908	Fukomys_damarensis
ENSRNOG00000023639	Rpusd1	98	57.756	ENSFHEG00000004736	rpusd1	98	57.756	Fundulus_heteroclitus
ENSRNOG00000023639	Rpusd1	83	62.846	ENSGMOG00000010756	rpusd1	99	55.049	Gadus_morhua
ENSRNOG00000023639	Rpusd1	99	65.902	ENSGALG00000005315	RPUSD1	100	65.574	Gallus_gallus
ENSRNOG00000023639	Rpusd1	98	59.000	ENSGAFG00000009886	rpusd1	98	59.000	Gambusia_affinis
ENSRNOG00000023639	Rpusd1	82	64.143	ENSGACG00000014276	rpusd1	97	58.224	Gasterosteus_aculeatus
ENSRNOG00000023639	Rpusd1	99	66.447	ENSGAGG00000004181	RPUSD1	99	66.118	Gopherus_agassizii
ENSRNOG00000023639	Rpusd1	100	81.410	ENSGGOG00000013997	RPUSD1	100	81.731	Gorilla_gorilla
ENSRNOG00000023639	Rpusd1	98	58.306	ENSHBUG00000023728	rpusd1	98	57.468	Haplochromis_burtoni
ENSRNOG00000023639	Rpusd1	100	87.582	ENSHGLG00000002595	RPUSD1	100	87.582	Heterocephalus_glaber_female
ENSRNOG00000023639	Rpusd1	100	87.582	ENSHGLG00100014303	RPUSD1	100	87.582	Heterocephalus_glaber_male
ENSRNOG00000023639	Rpusd1	98	58.224	ENSHCOG00000002390	rpusd1	99	57.756	Hippocampus_comes
ENSRNOG00000023639	Rpusd1	99	60.726	ENSIPUG00000001570	rpusd1	99	60.726	Ictalurus_punctatus
ENSRNOG00000023639	Rpusd1	100	88.562	ENSSTOG00000004276	RPUSD1	100	88.562	Ictidomys_tridecemlineatus
ENSRNOG00000023639	Rpusd1	100	91.176	ENSJJAG00000015696	Rpusd1	100	91.176	Jaculus_jaculus
ENSRNOG00000023639	Rpusd1	98	57.000	ENSKMAG00000017287	rpusd1	98	57.333	Kryptolebias_marmoratus
ENSRNOG00000023639	Rpusd1	98	57.377	ENSLBEG00000022502	rpusd1	98	57.705	Labrus_bergylta
ENSRNOG00000023639	Rpusd1	98	57.377	ENSLBEG00000013354	RPUSD1	98	57.705	Labrus_bergylta
ENSRNOG00000023639	Rpusd1	99	62.914	ENSLACG00000008869	RPUSD1	99	62.914	Latimeria_chalumnae
ENSRNOG00000023639	Rpusd1	71	74.074	ENSLOCG00000005682	rpusd1	99	74.074	Lepisosteus_oculatus
ENSRNOG00000023639	Rpusd1	100	83.333	ENSLAFG00000002115	RPUSD1	100	83.333	Loxodonta_africana
ENSRNOG00000023639	Rpusd1	100	83.654	ENSMFAG00000003961	RPUSD1	100	83.974	Macaca_fascicularis
ENSRNOG00000023639	Rpusd1	100	83.654	ENSMMUG00000000842	RPUSD1	100	83.974	Macaca_mulatta
ENSRNOG00000023639	Rpusd1	100	83.654	ENSMNEG00000042712	RPUSD1	100	83.974	Macaca_nemestrina
ENSRNOG00000023639	Rpusd1	100	83.654	ENSMLEG00000030591	RPUSD1	100	83.974	Mandrillus_leucophaeus
ENSRNOG00000023639	Rpusd1	83	64.822	ENSMAMG00000004735	rpusd1	98	58.497	Mastacembelus_armatus
ENSRNOG00000023639	Rpusd1	98	58.632	ENSMZEG00005003214	rpusd1	98	57.792	Maylandia_zebra
ENSRNOG00000023639	Rpusd1	98	65.116	ENSMGAG00000005447	RPUSD1	100	65.116	Meleagris_gallopavo
ENSRNOG00000023639	Rpusd1	86	85.714	ENSMAUG00000019998	Rpusd1	100	85.714	Mesocricetus_auratus
ENSRNOG00000023639	Rpusd1	100	85.016	ENSMICG00000017561	RPUSD1	100	83.758	Microcebus_murinus
ENSRNOG00000023639	Rpusd1	100	93.464	ENSMOCG00000014082	Rpusd1	100	93.464	Microtus_ochrogaster
ENSRNOG00000023639	Rpusd1	80	65.714	ENSMMOG00000012569	rpusd1	99	58.000	Mola_mola
ENSRNOG00000023639	Rpusd1	100	71.613	ENSMODG00000016882	RPUSD1	100	70.968	Monodelphis_domestica
ENSRNOG00000023639	Rpusd1	98	57.516	ENSMALG00000017818	rpusd1	98	58.497	Monopterus_albus
ENSRNOG00000023639	Rpusd1	100	97.059	MGP_CAROLIEiJ_G0021244	Rpusd1	100	97.059	Mus_caroli
ENSRNOG00000023639	Rpusd1	100	97.386	ENSMUSG00000041199	Rpusd1	100	97.386	Mus_musculus
ENSRNOG00000023639	Rpusd1	100	95.455	MGP_PahariEiJ_G0023562	Rpusd1	100	95.455	Mus_pahari
ENSRNOG00000023639	Rpusd1	100	97.386	MGP_SPRETEiJ_G0022155	Rpusd1	100	97.386	Mus_spretus
ENSRNOG00000023639	Rpusd1	100	82.353	ENSMPUG00000015897	RPUSD1	100	83.660	Mustela_putorius_furo
ENSRNOG00000023639	Rpusd1	100	84.615	ENSMLUG00000001089	RPUSD1	100	85.256	Myotis_lucifugus
ENSRNOG00000023639	Rpusd1	100	91.503	ENSNGAG00000003595	Rpusd1	100	91.503	Nannospalax_galili
ENSRNOG00000023639	Rpusd1	98	58.528	ENSNBRG00000006457	rpusd1	98	58.689	Neolamprologus_brichardi
ENSRNOG00000023639	Rpusd1	55	77.714	ENSNLEG00000008424	-	100	77.714	Nomascus_leucogenys
ENSRNOG00000023639	Rpusd1	100	70.418	ENSMEUG00000016049	RPUSD1	100	70.915	Notamacropus_eugenii
ENSRNOG00000023639	Rpusd1	99	77.303	ENSOPRG00000008340	RPUSD1	99	77.303	Ochotona_princeps
ENSRNOG00000023639	Rpusd1	100	84.641	ENSODEG00000016945	RPUSD1	100	84.641	Octodon_degus
ENSRNOG00000023639	Rpusd1	98	57.980	ENSONIG00000015672	rpusd1	99	57.143	Oreochromis_niloticus
ENSRNOG00000023639	Rpusd1	99	58.278	ENSORLG00000013009	rpusd1	99	58.278	Oryzias_latipes
ENSRNOG00000023639	Rpusd1	99	57.947	ENSORLG00020010382	rpusd1	99	57.947	Oryzias_latipes_hni
ENSRNOG00000023639	Rpusd1	99	57.285	ENSORLG00015021354	rpusd1	99	57.285	Oryzias_latipes_hsok
ENSRNOG00000023639	Rpusd1	98	57.860	ENSOMEG00000021426	rpusd1	98	57.860	Oryzias_melastigma
ENSRNOG00000023639	Rpusd1	100	87.179	ENSOGAG00000003795	RPUSD1	100	86.538	Otolemur_garnettii
ENSRNOG00000023639	Rpusd1	100	84.416	ENSOARG00000014254	RPUSD1	100	85.390	Ovis_aries
ENSRNOG00000023639	Rpusd1	100	81.410	ENSPPAG00000034797	RPUSD1	100	81.731	Pan_paniscus
ENSRNOG00000023639	Rpusd1	100	82.353	ENSPPRG00000012389	RPUSD1	100	81.553	Panthera_pardus
ENSRNOG00000023639	Rpusd1	100	82.353	ENSPTIG00000008545	RPUSD1	92	81.553	Panthera_tigris_altaica
ENSRNOG00000023639	Rpusd1	100	81.410	ENSPTRG00000007565	RPUSD1	100	81.731	Pan_troglodytes
ENSRNOG00000023639	Rpusd1	100	83.013	ENSPANG00000024401	RPUSD1	100	83.333	Papio_anubis
ENSRNOG00000023639	Rpusd1	99	59.871	ENSPKIG00000018890	rpusd1	91	59.871	Paramormyrops_kingsleyae
ENSRNOG00000023639	Rpusd1	99	67.541	ENSPSIG00000013945	RPUSD1	100	67.213	Pelodiscus_sinensis
ENSRNOG00000023639	Rpusd1	99	57.049	ENSPMGG00000014950	rpusd1	99	57.049	Periophthalmus_magnuspinnatus
ENSRNOG00000023639	Rpusd1	100	93.791	ENSPEMG00000000497	Rpusd1	100	93.791	Peromyscus_maniculatus_bairdii
ENSRNOG00000023639	Rpusd1	98	50.654	ENSPMAG00000001563	rpusd1	82	57.143	Petromyzon_marinus
ENSRNOG00000023639	Rpusd1	100	70.288	ENSPCIG00000021216	-	94	71.569	Phascolarctos_cinereus
ENSRNOG00000023639	Rpusd1	98	59.406	ENSPFOG00000007946	rpusd1	98	58.528	Poecilia_formosa
ENSRNOG00000023639	Rpusd1	98	59.406	ENSPLAG00000011925	rpusd1	98	58.528	Poecilia_latipinna
ENSRNOG00000023639	Rpusd1	98	59.076	ENSPMEG00000002910	rpusd1	98	58.194	Poecilia_mexicana
ENSRNOG00000023639	Rpusd1	98	59.406	ENSPREG00000019851	rpusd1	98	59.667	Poecilia_reticulata
ENSRNOG00000023639	Rpusd1	100	66.667	ENSPCAG00000002258	RPUSD1	100	66.667	Procavia_capensis
ENSRNOG00000023639	Rpusd1	100	85.897	ENSPCOG00000022582	RPUSD1	100	86.218	Propithecus_coquereli
ENSRNOG00000023639	Rpusd1	100	82.051	ENSPVAG00000013104	RPUSD1	100	82.372	Pteropus_vampyrus
ENSRNOG00000023639	Rpusd1	98	58.306	ENSPNYG00000024076	rpusd1	98	57.860	Pundamilia_nyererei
ENSRNOG00000023639	Rpusd1	99	58.416	ENSPNAG00000013806	rpusd1	100	58.416	Pygocentrus_nattereri
ENSRNOG00000023639	Rpusd1	100	83.333	ENSRBIG00000030238	RPUSD1	100	83.654	Rhinopithecus_bieti
ENSRNOG00000023639	Rpusd1	100	83.333	ENSRROG00000036663	RPUSD1	100	83.654	Rhinopithecus_roxellana
ENSRNOG00000023639	Rpusd1	100	82.680	ENSSBOG00000033063	RPUSD1	100	83.333	Saimiri_boliviensis_boliviensis
ENSRNOG00000023639	Rpusd1	100	69.329	ENSSHAG00000013500	RPUSD1	100	70.588	Sarcophilus_harrisii
ENSRNOG00000023639	Rpusd1	99	61.921	ENSSFOG00015014394	rpusd1	99	61.921	Scleropages_formosus
ENSRNOG00000023639	Rpusd1	98	58.033	ENSSMAG00000008045	rpusd1	91	58.033	Scophthalmus_maximus
ENSRNOG00000023639	Rpusd1	83	66.403	ENSSDUG00000001829	rpusd1	95	59.672	Seriola_dumerili
ENSRNOG00000023639	Rpusd1	83	66.403	ENSSLDG00000020853	rpusd1	95	59.672	Seriola_lalandi_dorsalis
ENSRNOG00000023639	Rpusd1	55	87.425	ENSSARG00000011187	-	100	87.425	Sorex_araneus
ENSRNOG00000023639	Rpusd1	63	55.102	ENSSPUG00000005119	-	100	54.315	Sphenodon_punctatus
ENSRNOG00000023639	Rpusd1	98	58.689	ENSSPAG00000012708	rpusd1	98	59.150	Stegastes_partitus
ENSRNOG00000023639	Rpusd1	100	83.333	ENSSSCG00000008000	RPUSD1	98	87.402	Sus_scrofa
ENSRNOG00000023639	Rpusd1	83	75.686	ENSTGUG00000015375	RPUSD1	100	75.686	Taeniopygia_guttata
ENSRNOG00000023639	Rpusd1	98	57.190	ENSTRUG00000003041	rpusd1	98	57.190	Takifugu_rubripes
ENSRNOG00000023639	Rpusd1	98	54.333	ENSTNIG00000002660	rpusd1	99	54.333	Tetraodon_nigroviridis
ENSRNOG00000023639	Rpusd1	100	84.615	ENSTTRG00000010167	RPUSD1	100	83.654	Tursiops_truncatus
ENSRNOG00000023639	Rpusd1	100	83.987	ENSUAMG00000012736	RPUSD1	100	84.314	Ursus_americanus
ENSRNOG00000023639	Rpusd1	100	83.987	ENSUMAG00000021174	RPUSD1	100	84.314	Ursus_maritimus
ENSRNOG00000023639	Rpusd1	100	83.713	ENSVVUG00000012357	RPUSD1	100	83.660	Vulpes_vulpes
ENSRNOG00000023639	Rpusd1	100	61.438	ENSXETG00000007184	rpusd1	100	61.438	Xenopus_tropicalis
ENSRNOG00000023639	Rpusd1	98	58.746	ENSXCOG00000017930	rpusd1	98	58.333	Xiphophorus_couchianus
ENSRNOG00000023639	Rpusd1	98	59.076	ENSXMAG00000024084	rpusd1	98	58.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function