EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000023679 (Gene tree)
Gene ID
689788
Gene Symbol
Prdm5
Alias
LOC689788
Full Name
PR/SET domain 5
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
153180 bases
Position
chr4:96659084-96812263
Accession
1588700
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5218
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5228
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5238
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5248
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5258
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5268
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5278
ENSRNOP00000009569zf-C2H2PF00096.262.9e-5288
ENSRNOP00000009569zf-metPF12874.72e-1813
ENSRNOP00000009569zf-metPF12874.72e-1823
ENSRNOP00000009569zf-metPF12874.72e-1833
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000009569-3843XM_008763003ENSRNOP00000009569558 (aa)XP_008761225D3ZRZ9
Gene Model
Click here to download ENSRNOG00000023679's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023679's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000023679Prdm57334.447ENSRNOG00000014712Zfp395934.447
ENSRNOG00000023679Prdm57441.634ENSRNOG00000025937Zfp268741.221
ENSRNOG00000023679Prdm57436.634ENSRNOG00000052406LOC1025525278640.196
ENSRNOG00000023679Prdm57241.892ENSRNOG00000019059Zfp17841.892
ENSRNOG00000023679Prdm57343.878ENSRNOG00000007576Zfp5976743.878
ENSRNOG00000023679Prdm57338.978ENSRNOG00000042777Zfp286338.978
ENSRNOG00000023679Prdm56934.316ENSRNOG00000002713Zfp6728934.316
ENSRNOG00000023679Prdm58635.770ENSRNOG00000016417Zfp1368635.770
ENSRNOG00000023679Prdm57140.000ENSRNOG00000030517Zfp8796740.000
ENSRNOG00000023679Prdm57138.305ENSRNOG00000010436Zbtb175738.305
ENSRNOG00000023679Prdm57442.188ENSRNOG00000024056Zfp177942.188
ENSRNOG00000023679Prdm57340.647ENSRNOG00000048394Zfp5607440.647
ENSRNOG00000023679Prdm58235.544ENSRNOG00000049259LOC1025498429039.095
ENSRNOG00000023679Prdm59443.529ENSRNOG00000009218Prdm126843.529
ENSRNOG00000023679Prdm57245.946ENSRNOG00000019416Zfp616745.946
ENSRNOG00000023679Prdm57341.339ENSRNOG00000014331Zfp8108541.339
ENSRNOG00000023679Prdm57436.333ENSRNOG00000061533AABR07001926.38236.333
ENSRNOG00000023679Prdm57339.628ENSRNOG00000030308Zfp2516939.628
ENSRNOG00000023679Prdm57530.392ENSRNOG00000055761Zfp5748630.921
ENSRNOG00000023679Prdm57031.854ENSRNOG00000013460Zfp3198731.854
ENSRNOG00000023679Prdm56839.669ENSRNOG00000013586Snai35439.669
ENSRNOG00000023679Prdm57440.833ENSRNOG00000022431Zfp8678340.107
ENSRNOG00000023679Prdm57240.000ENSRNOG00000014658Zfp4239840.000
ENSRNOG00000023679Prdm57047.297ENSRNOG00000029490Znf7685344.211
ENSRNOG00000023679Prdm56744.828ENSRNOG00000009594Snai15344.828
ENSRNOG00000023679Prdm56842.105ENSRNOG00000015188AABR07053681.18538.956
ENSRNOG00000023679Prdm57340.458ENSRNOG00000032625AC118165.110040.458
ENSRNOG00000023679Prdm56841.667ENSRNOG00000047699Snai25241.667
ENSRNOG00000023679Prdm57439.205ENSRNOG00000006684Zfp3178839.205
ENSRNOG00000023679Prdm57647.945ENSRNOG00000003455Zfp136047.312
ENSRNOG00000023679Prdm57338.976ENSRNOG00000043341Zfp517638.281
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000023679Prdm59991.304ENSG00000138738PRDM59990.664Homo_sapiens
ENSRNOG00000023679Prdm59977.639ENSAPOG00000023220prdm59977.460Acanthochromis_polyacanthus
ENSRNOG00000023679Prdm59080.418ENSAMEG00000003050PRDM59980.608Ailuropoda_melanoleuca
ENSRNOG00000023679Prdm59976.344ENSACIG00000000406prdm59976.165Amphilophus_citrinellus
ENSRNOG00000023679Prdm59978.674ENSAOCG00000014806prdm59978.495Amphiprion_ocellaris
ENSRNOG00000023679Prdm59973.404ENSAPEG00000016846prdm59873.227Amphiprion_percula
ENSRNOG00000023679Prdm59978.136ENSATEG00000013829prdm59978.136Anabas_testudineus
ENSRNOG00000023679Prdm59476.786ENSAPLG00000013828PRDM59976.786Anas_platyrhynchos
ENSRNOG00000023679Prdm59971.939ENSACAG00000012999PRDM59971.939Anolis_carolinensis
ENSRNOG00000023679Prdm59991.519ENSANAG00000027411PRDM59991.519Aotus_nancymaae
ENSRNOG00000023679Prdm59978.674ENSACLG00000017996prdm59978.495Astatotilapia_calliptera
ENSRNOG00000023679Prdm58371.515ENSAMXG00000041864prdm59971.515Astyanax_mexicanus
ENSRNOG00000023679Prdm59984.184ENSBTAG00000012111PRDM59984.184Bos_taurus
ENSRNOG00000023679Prdm59991.873ENSCJAG00000003133PRDM59991.873Callithrix_jacchus
ENSRNOG00000023679Prdm59182.135ENSCAFG00000004179PRDM59682.135Canis_familiaris
ENSRNOG00000023679Prdm59990.305ENSCAFG00020017685PRDM59990.305Canis_lupus_dingo
ENSRNOG00000023679Prdm59988.869ENSCHIG00000018772PRDM59988.869Capra_hircus
ENSRNOG00000023679Prdm59491.245ENSTSYG00000009630PRDM59491.245Carlito_syrichta
ENSRNOG00000023679Prdm59685.475ENSCAPG00000015217PRDM59989.815Cavia_aperea
ENSRNOG00000023679Prdm59492.226ENSCPOG00000012883PRDM59992.226Cavia_porcellus
ENSRNOG00000023679Prdm59991.873ENSCCAG00000023157PRDM59991.873Cebus_capucinus
ENSRNOG00000023679Prdm59992.226ENSCATG00000042510PRDM59992.226Cercocebus_atys
ENSRNOG00000023679Prdm59492.580ENSCLAG00000005392PRDM59992.580Chinchilla_lanigera
ENSRNOG00000023679Prdm59990.844ENSCSAG00000003729PRDM59990.844Chlorocebus_sabaeus
ENSRNOG00000023679Prdm59984.475ENSCHOG00000007801PRDM59081.148Choloepus_hoffmanni
ENSRNOG00000023679Prdm59976.549ENSCPBG00000024735PRDM59976.382Chrysemys_picta_bellii
ENSRNOG00000023679Prdm59992.226ENSCANG00000036807PRDM59992.226Colobus_angolensis_palliatus
ENSRNOG00000023679Prdm59994.982ENSCGRG00001010581Prdm59994.982Cricetulus_griseus_chok1gshd
ENSRNOG00000023679Prdm59487.335ENSCGRG00000010996-9887.335Cricetulus_griseus_crigri
ENSRNOG00000023679Prdm59977.599ENSCSEG00000019979prdm59978.315Cynoglossus_semilaevis
ENSRNOG00000023679Prdm59970.119ENSCVAG00000013692prdm59969.949Cyprinodon_variegatus
ENSRNOG00000023679Prdm59972.758ENSDARG00000006288prdm59972.927Danio_rerio
ENSRNOG00000023679Prdm59083.490ENSDNOG00000002009PRDM59983.677Dasypus_novemcinctus
ENSRNOG00000023679Prdm59991.519ENSDORG00000007739Prdm59991.519Dipodomys_ordii
ENSRNOG00000023679Prdm59484.252ENSETEG00000020268PRDM59084.252Echinops_telfairi
ENSRNOG00000023679Prdm59969.946ENSEBUG00000004301prdm59969.946Eptatretus_burgeri
ENSRNOG00000023679Prdm59992.226ENSEASG00005018365PRDM59992.226Equus_asinus_asinus
ENSRNOG00000023679Prdm59979.433ENSECAG00000024747-9979.433Equus_caballus
ENSRNOG00000023679Prdm59991.423ENSECAG00000011516PRDM58991.423Equus_caballus
ENSRNOG00000023679Prdm59982.986ENSEEUG00000010306PRDM510082.986Erinaceus_europaeus
ENSRNOG00000023679Prdm59973.849ENSELUG00000005894prdm59373.849Esox_lucius
ENSRNOG00000023679Prdm59991.097ENSFCAG00000025656PRDM59990.305Felis_catus
ENSRNOG00000023679Prdm59669.159ENSFALG00000008381PRDM510069.159Ficedula_albicollis
ENSRNOG00000023679Prdm59992.933ENSFDAG00000021361PRDM59992.933Fukomys_damarensis
ENSRNOG00000023679Prdm59978.495ENSFHEG00000013040prdm59978.495Fundulus_heteroclitus
ENSRNOG00000023679Prdm59961.321ENSGMOG00000012038prdm59963.529Gadus_morhua
ENSRNOG00000023679Prdm59977.496ENSGALG00000011963PRDM59977.496Gallus_gallus
ENSRNOG00000023679Prdm59974.776ENSGAFG00000019233prdm59974.776Gambusia_affinis
ENSRNOG00000023679Prdm59975.479ENSGAGG00000020362PRDM59975.670Gopherus_agassizii
ENSRNOG00000023679Prdm59992.226ENSGGOG00000013562PRDM59992.226Gorilla_gorilla
ENSRNOG00000023679Prdm59978.674ENSHBUG00000023375prdm59978.136Haplochromis_burtoni
ENSRNOG00000023679Prdm59986.531ENSHGLG00000003010PRDM59885.278Heterocephalus_glaber_female
ENSRNOG00000023679Prdm59992.580ENSHGLG00100003696PRDM59992.580Heterocephalus_glaber_male
ENSRNOG00000023679Prdm59973.898ENSHCOG00000012131prdm59974.112Hippocampus_comes
ENSRNOG00000023679Prdm59979.749ENSIPUG00000001248prdm59979.211Ictalurus_punctatus
ENSRNOG00000023679Prdm59488.693ENSSTOG00000004741PRDM59988.693Ictidomys_tridecemlineatus
ENSRNOG00000023679Prdm59492.226ENSJJAG00000011464Prdm59992.226Jaculus_jaculus
ENSRNOG00000023679Prdm59978.136ENSKMAG00000013663prdm59978.136Kryptolebias_marmoratus
ENSRNOG00000023679Prdm59974.024ENSLBEG00000022736prdm59974.024Labrus_bergylta
ENSRNOG00000023679Prdm59075.327ENSLACG00000009187PRDM59975.327Latimeria_chalumnae
ENSRNOG00000023679Prdm59973.129ENSLOCG00000009778prdm59973.299Lepisosteus_oculatus
ENSRNOG00000023679Prdm59989.408ENSLAFG00000006532PRDM59989.408Loxodonta_africana
ENSRNOG00000023679Prdm59992.226ENSMFAG00000045845PRDM59992.226Macaca_fascicularis
ENSRNOG00000023679Prdm59992.226ENSMMUG00000003249PRDM59992.226Macaca_mulatta
ENSRNOG00000023679Prdm59992.226ENSMNEG00000019018PRDM59992.226Macaca_nemestrina
ENSRNOG00000023679Prdm59490.708ENSMLEG00000023145PRDM59990.114Mandrillus_leucophaeus
ENSRNOG00000023679Prdm59975.475ENSMAMG00000013419prdm59975.475Mastacembelus_armatus
ENSRNOG00000023679Prdm59978.674ENSMZEG00005020645prdm59978.136Maylandia_zebra
ENSRNOG00000023679Prdm59476.429ENSMGAG00000010710PRDM59976.429Meleagris_gallopavo
ENSRNOG00000023679Prdm59994.255ENSMAUG00000006768Prdm59994.255Mesocricetus_auratus
ENSRNOG00000023679Prdm59991.873ENSMICG00000001459PRDM59991.873Microcebus_murinus
ENSRNOG00000023679Prdm59995.652ENSMOCG00000016267Prdm59994.614Microtus_ochrogaster
ENSRNOG00000023679Prdm59977.778ENSMMOG00000006035prdm59977.778Mola_mola
ENSRNOG00000023679Prdm59974.068ENSMODG00000018942PRDM59974.068Monodelphis_domestica
ENSRNOG00000023679Prdm59975.269ENSMALG00000013934prdm59975.269Monopterus_albus
ENSRNOG00000023679Prdm59996.768MGP_CAROLIEiJ_G0028463Prdm59996.768Mus_caroli
ENSRNOG00000023679Prdm59997.723ENSMUSG00000029913Prdm59996.409Mus_musculus
ENSRNOG00000023679Prdm59998.344MGP_PahariEiJ_G0022203Prdm59996.948Mus_pahari
ENSRNOG00000023679Prdm59997.723MGP_SPRETEiJ_G0029467Prdm59996.409Mus_spretus
ENSRNOG00000023679Prdm59985.034ENSMPUG00000017415PRDM59985.204Mustela_putorius_furo
ENSRNOG00000023679Prdm59076.679ENSMLUG00000006097PRDM59976.679Myotis_lucifugus
ENSRNOG00000023679Prdm59992.580ENSNGAG00000018317Prdm59992.580Nannospalax_galili
ENSRNOG00000023679Prdm59973.913ENSNBRG00000004976prdm59974.286Neolamprologus_brichardi
ENSRNOG00000023679Prdm59992.226ENSNLEG00000009107PRDM59992.226Nomascus_leucogenys
ENSRNOG00000023679Prdm58291.525ENSMEUG00000006576-7091.525Notamacropus_eugenii
ENSRNOG00000023679Prdm59493.536ENSOPRG00000011066-8167.835Ochotona_princeps
ENSRNOG00000023679Prdm59992.933ENSODEG00000009133PRDM59992.933Octodon_degus
ENSRNOG00000023679Prdm59974.024ENSONIG00000003111prdm59974.194Oreochromis_niloticus
ENSRNOG00000023679Prdm59979.012ENSOANG00000015109PRDM59778.807Ornithorhynchus_anatinus
ENSRNOG00000023679Prdm56975.000ENSOANG00000006197-9975.000Ornithorhynchus_anatinus
ENSRNOG00000023679Prdm59281.132ENSOCUG00000013454PRDM59981.321Oryctolagus_cuniculus
ENSRNOG00000023679Prdm59978.136ENSORLG00000016247prdm59977.778Oryzias_latipes
ENSRNOG00000023679Prdm59978.136ENSORLG00020018051prdm59978.315Oryzias_latipes_hni
ENSRNOG00000023679Prdm59978.136ENSORLG00015013760prdm59977.778Oryzias_latipes_hsok
ENSRNOG00000023679Prdm59978.354ENSOMEG00000005143prdm59977.996Oryzias_melastigma
ENSRNOG00000023679Prdm58273.620ENSOGAG00000009996PRDM59775.254Otolemur_garnettii
ENSRNOG00000023679Prdm59482.821ENSOARG00000015473PRDM510082.276Ovis_aries
ENSRNOG00000023679Prdm59491.829ENSPPAG00000043045PRDM510091.829Pan_paniscus
ENSRNOG00000023679Prdm59991.097ENSPPRG00000001020PRDM59990.305Panthera_pardus
ENSRNOG00000023679Prdm59490.487ENSPTIG00000010807PRDM59489.734Panthera_tigris_altaica
ENSRNOG00000023679Prdm59992.226ENSPTRG00000016403PRDM59992.226Pan_troglodytes
ENSRNOG00000023679Prdm59992.226ENSPANG00000023612PRDM59992.226Papio_anubis
ENSRNOG00000023679Prdm59654.613ENSPKIG00000015492prdm59954.482Paramormyrops_kingsleyae
ENSRNOG00000023679Prdm59976.481ENSPSIG00000013505PRDM59976.481Pelodiscus_sinensis
ENSRNOG00000023679Prdm59974.910ENSPMGG00000012622prdm59974.910Periophthalmus_magnuspinnatus
ENSRNOG00000023679Prdm57166.910ENSPMAG00000005248prdm510066.910Petromyzon_marinus
ENSRNOG00000023679Prdm59875.134ENSPFOG00000018630prdm59975.401Poecilia_formosa
ENSRNOG00000023679Prdm59974.830ENSPLAG00000014148prdm59974.830Poecilia_latipinna
ENSRNOG00000023679Prdm59979.032ENSPMEG00000018002prdm59979.032Poecilia_mexicana
ENSRNOG00000023679Prdm59979.032ENSPREG00000018366prdm59979.032Poecilia_reticulata
ENSRNOG00000023679Prdm59985.714ENSPPYG00000015031PRDM59985.884Pongo_abelii
ENSRNOG00000023679Prdm59477.379ENSPCAG00000011671PRDM59977.379Procavia_capensis
ENSRNOG00000023679Prdm59991.873ENSPCOG00000022828PRDM59991.873Propithecus_coquereli
ENSRNOG00000023679Prdm59480.072ENSPVAG00000012309PRDM59980.072Pteropus_vampyrus
ENSRNOG00000023679Prdm59978.674ENSPNYG00000012194prdm59978.495Pundamilia_nyererei
ENSRNOG00000023679Prdm59978.853ENSPNAG00000026181prdm59978.853Pygocentrus_nattereri
ENSRNOG00000023679Prdm59270.018ENSPNAG00000023191-9970.201Pygocentrus_nattereri
ENSRNOG00000023679Prdm59992.226ENSRBIG00000041307PRDM59992.226Rhinopithecus_bieti
ENSRNOG00000023679Prdm59479.206ENSRROG00000035343PRDM59978.707Rhinopithecus_roxellana
ENSRNOG00000023679Prdm59991.873ENSSBOG00000022100PRDM59991.873Saimiri_boliviensis_boliviensis
ENSRNOG00000023679Prdm59071.926ENSSHAG00000003250PRDM510072.131Sarcophilus_harrisii
ENSRNOG00000023679Prdm59972.426ENSSFOG00015020478prdm59971.902Scleropages_formosus
ENSRNOG00000023679Prdm59978.315ENSSMAG00000018844prdm59978.315Scophthalmus_maximus
ENSRNOG00000023679Prdm59978.495ENSSDUG00000020397prdm59978.495Seriola_dumerili
ENSRNOG00000023679Prdm59978.495ENSSLDG00000013353prdm59978.495Seriola_lalandi_dorsalis
ENSRNOG00000023679Prdm59385.333ENSSARG00000014129-6885.333Sorex_araneus
ENSRNOG00000023679Prdm59984.806ENSSPUG00000009941PRDM59984.806Sphenodon_punctatus
ENSRNOG00000023679Prdm59974.363ENSSPAG00000013866prdm59974.194Stegastes_partitus
ENSRNOG00000023679Prdm59989.946ENSSSCG00000009101PRDM59989.946Sus_scrofa
ENSRNOG00000023679Prdm59476.481ENSTGUG00000001920PRDM59976.481Taeniopygia_guttata
ENSRNOG00000023679Prdm59977.240ENSTRUG00000013850prdm59977.240Takifugu_rubripes
ENSRNOG00000023679Prdm59962.791ENSTNIG00000005901prdm59962.791Tetraodon_nigroviridis
ENSRNOG00000023679Prdm59278.630ENSTBEG00000015386PRDM58578.904Tupaia_belangeri
ENSRNOG00000023679Prdm59984.354ENSTTRG00000010996PRDM59984.354Tursiops_truncatus
ENSRNOG00000023679Prdm59495.726ENSUAMG00000009994PRDM58489.506Ursus_americanus
ENSRNOG00000023679Prdm59492.226ENSUMAG00000003733PRDM59892.226Ursus_maritimus
ENSRNOG00000023679Prdm59580.108ENSVPAG00000007435PRDM59980.108Vicugna_pacos
ENSRNOG00000023679Prdm59284.587ENSVVUG00000013192PRDM59984.771Vulpes_vulpes
ENSRNOG00000023679Prdm59972.326ENSXETG00000002101prdm59972.326Xenopus_tropicalis
ENSRNOG00000023679Prdm59978.853ENSXCOG00000008567prdm59978.853Xiphophorus_couchianus
ENSRNOG00000023679Prdm59978.853ENSXMAG00000013825prdm59978.853Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II-IEAProcess
GO:0000122negative regulation of transcription by RNA polymerase II-ISOProcess
GO:0000278mitotic cell cycle-IEAProcess
GO:0000278mitotic cell cycle-ISOProcess
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding-IEAFunction
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding-ISOFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific-IEAFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific-ISOFunction
GO:0003700DNA-binding transcription factor activity21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm21873635.IBAComponent
GO:0005730nucleolus-IEAComponent
GO:0005730nucleolus-ISOComponent
GO:0016575histone deacetylation-IEAProcess
GO:0016575histone deacetylation-ISOProcess
GO:0016604nuclear body-IEAComponent
GO:0016604nuclear body-ISOComponent
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0043565sequence-specific DNA binding-ISOFunction
GO:0044212transcription regulatory region DNA binding-ISOFunction
GO:0045892negative regulation of transcription, DNA-templated21873635.IBAProcess
GO:0045892negative regulation of transcription, DNA-templated-ISOProcess
GO:0045893positive regulation of transcription, DNA-templated21873635.IBAProcess
GO:0045944positive regulation of transcription by RNA polymerase II21873635.IBAProcess
GO:0046872metal ion binding-IEAFunction
GO:0051567histone H3-K9 methylation-IEAProcess
GO:0051567histone H3-K9 methylation-ISOProcess
GO:0070491repressing transcription factor binding-IEAFunction
GO:0070491repressing transcription factor binding-ISOFunction
GO:1990830cellular response to leukemia inhibitory factor-IEAProcess
GO:1990830cellular response to leukemia inhibitory factor-ISOProcess

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