EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000023781 (Gene tree)
Gene ID: 64204
Gene Symbol: Plec
Alias: Pcn|Plec1|Pltn
Full Name: plectin
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 59643 bases
Position: chr7:117230319-117289961
Accession: 621649
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073548	S10_plectin	PF03501.15	2.3e-35	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000040762	-	15085	XM_006241882	ENSRNOP00000044096	4544 (aa)	XP_006241944	F7F9U6
ENSRNOT00000086550	-	14826	XM_008765597	ENSRNOP00000070850	4513 (aa)	-	Q6S399
ENSRNOT00000091840	-	14887	XM_008765592	ENSRNOP00000070881	4523 (aa)	-	Q6S3A3
ENSRNOT00000081021	-	14900	XM_008765594	ENSRNOP00000069947	4552 (aa)	-	Q6S396
ENSRNOT00000091285	-	14828	XM_008765596	ENSRNOP00000070533	4536 (aa)	-	Q6S3A4
ENSRNOT00000088945	-	14872	XM_017595082	ENSRNOP00000074685	4387 (aa)	XP_017450571	A0A0G2K1J5
ENSRNOT00000082271	-	14918	XM_017595082	ENSRNOP00000071867	4387 (aa)	XP_017450571	A0A0G2K1J5
ENSRNOT00000006311	-	14960	XM_008765595	ENSRNOP00000006311	4545 (aa)	-	Q6S395
ENSRNOT00000083429	-	15420	XM_006241870	ENSRNOP00000073548	4688 (aa)	XP_006241932	Q6S3A0
ENSRNOT00000042642	-	14893	XM_006241875	ENSRNOP00000040018	4574 (aa)	XP_006241937	Q6S3A5

Gene Model

Click here to download ENSRNOG00000023781's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000023781's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000023781	Plec	100	93.605	ENSG00000178209	PLEC	100	100.000	Homo_sapiens
ENSRNOG00000023781	Plec	100	93.220	ENSANAG00000032431	PLEC	100	93.220	Aotus_nancymaae
ENSRNOG00000023781	Plec	100	92.662	ENSBTAG00000011922	PLEC	100	92.662	Bos_taurus
ENSRNOG00000023781	Plec	100	93.433	ENSCJAG00000021472	PLEC	100	93.433	Callithrix_jacchus
ENSRNOG00000023781	Plec	100	92.329	ENSCAFG00000001433	PLEC	100	92.329	Canis_familiaris
ENSRNOG00000023781	Plec	88	92.471	ENSCHIG00000022260	PLEC	99	92.471	Capra_hircus
ENSRNOG00000023781	Plec	100	94.052	ENSTSYG00000033419	PLEC	100	94.052	Carlito_syrichta
ENSRNOG00000023781	Plec	100	94.710	ENSCPOG00000007957	PLEC	100	94.710	Cavia_porcellus
ENSRNOG00000023781	Plec	100	93.497	ENSCCAG00000031237	PLEC	100	93.497	Cebus_capucinus
ENSRNOG00000023781	Plec	100	94.010	ENSCATG00000009349	PLEC	100	94.010	Cercocebus_atys
ENSRNOG00000023781	Plec	100	94.561	ENSCLAG00000012830	PLEC	100	94.561	Chinchilla_lanigera
ENSRNOG00000023781	Plec	100	74.423	ENSCPBG00000021974	PLEC	99	72.372	Chrysemys_picta_bellii
ENSRNOG00000023781	Plec	100	97.230	ENSCGRG00001019864	Plec	100	97.230	Cricetulus_griseus_chok1gshd
ENSRNOG00000023781	Plec	100	96.567	ENSCGRG00000002714	Plec	100	96.567	Cricetulus_griseus_crigri
ENSRNOG00000023781	Plec	96	89.951	ENSDNOG00000031742	PLEC	99	89.951	Dasypus_novemcinctus
ENSRNOG00000023781	Plec	79	93.694	ENSETEG00000015535	-	62	93.694	Echinops_telfairi
ENSRNOG00000023781	Plec	80	96.789	ENSEEUG00000004554	-	67	97.095	Erinaceus_europaeus
ENSRNOG00000023781	Plec	100	92.321	ENSFCAG00000042897	PLEC	100	92.321	Felis_catus
ENSRNOG00000023781	Plec	100	94.369	ENSFDAG00000011856	PLEC	100	94.369	Fukomys_damarensis
ENSRNOG00000023781	Plec	100	89.628	ENSGGOG00000012217	PLEC	100	92.439	Gorilla_gorilla
ENSRNOG00000023781	Plec	100	94.518	ENSHGLG00000012646	PLEC	100	94.518	Heterocephalus_glaber_female
ENSRNOG00000023781	Plec	100	83.998	ENSHGLG00100011759	PLEC	100	83.893	Heterocephalus_glaber_male
ENSRNOG00000023781	Plec	100	93.704	ENSSTOG00000023061	PLEC	100	93.704	Ictidomys_tridecemlineatus
ENSRNOG00000023781	Plec	100	95.353	ENSJJAG00000012390	Plec	100	95.374	Jaculus_jaculus
ENSRNOG00000023781	Plec	100	93.988	ENSMFAG00000032066	PLEC	100	93.988	Macaca_fascicularis
ENSRNOG00000023781	Plec	100	90.340	ENSMMUG00000000388	PLEC	100	90.745	Macaca_mulatta
ENSRNOG00000023781	Plec	100	93.946	ENSMNEG00000011406	PLEC	100	93.946	Macaca_nemestrina
ENSRNOG00000023781	Plec	97	90.543	ENSMLEG00000033296	PLEC	100	93.937	Mandrillus_leucophaeus
ENSRNOG00000023781	Plec	100	97.081	ENSMAUG00000001116	Plec	100	97.081	Mesocricetus_auratus
ENSRNOG00000023781	Plec	100	93.691	ENSMICG00000016160	PLEC	100	93.691	Microcebus_murinus
ENSRNOG00000023781	Plec	100	97.334	ENSMOCG00000000674	Plec	100	97.334	Microtus_ochrogaster
ENSRNOG00000023781	Plec	100	98.379	MGP_CAROLIEiJ_G0019913	Plec	100	98.379	Mus_caroli
ENSRNOG00000023781	Plec	100	98.315	ENSMUSG00000022565	Plec	100	98.315	Mus_musculus
ENSRNOG00000023781	Plec	100	98.230	MGP_PahariEiJ_G0019923	Plec	100	98.342	Mus_pahari
ENSRNOG00000023781	Plec	100	98.336	MGP_SPRETEiJ_G0020816	Plec	100	98.336	Mus_spretus
ENSRNOG00000023781	Plec	100	90.337	ENSMPUG00000007329	PLEC	100	90.444	Mustela_putorius_furo
ENSRNOG00000023781	Plec	100	96.459	ENSNGAG00000008931	Plec	100	96.459	Nannospalax_galili
ENSRNOG00000023781	Plec	99	93.033	ENSMEUG00000004499	-	70	93.033	Notamacropus_eugenii
ENSRNOG00000023781	Plec	91	92.085	ENSOPRG00000015206	PLEC	69	92.085	Ochotona_princeps
ENSRNOG00000023781	Plec	93	79.227	ENSOARG00000015846	-	100	74.062	Ovis_aries
ENSRNOG00000023781	Plec	100	85.514	ENSPPAG00000042112	PLEC	100	89.000	Pan_paniscus
ENSRNOG00000023781	Plec	100	93.733	ENSPTRG00000020672	PLEC	100	93.733	Pan_troglodytes
ENSRNOG00000023781	Plec	100	93.733	ENSPANG00000023403	-	100	93.733	Papio_anubis
ENSRNOG00000023781	Plec	100	97.424	ENSPEMG00000011922	Plec	100	97.424	Peromyscus_maniculatus_bairdii
ENSRNOG00000023781	Plec	100	82.899	ENSPCIG00000014981	PLEC	100	82.899	Phascolarctos_cinereus
ENSRNOG00000023781	Plec	100	93.754	ENSPCOG00000023279	PLEC	100	93.754	Propithecus_coquereli
ENSRNOG00000023781	Plec	100	92.137	ENSPVAG00000009376	PLEC	91	92.359	Pteropus_vampyrus
ENSRNOG00000023781	Plec	100	85.323	ENSRBIG00000041068	PLEC	61	84.327	Rhinopithecus_bieti
ENSRNOG00000023781	Plec	100	93.878	ENSRROG00000015881	PLEC	100	93.878	Rhinopithecus_roxellana
ENSRNOG00000023781	Plec	100	91.004	ENSSBOG00000025259	PLEC	100	91.004	Saimiri_boliviensis_boliviensis
ENSRNOG00000023781	Plec	99	78.142	ENSSHAG00000009020	PLEC	99	80.017	Sarcophilus_harrisii
ENSRNOG00000023781	Plec	97	89.932	ENSTTRG00000010427	PLEC	95	89.932	Tursiops_truncatus
ENSRNOG00000023781	Plec	100	92.031	ENSVVUG00000010214	PLEC	100	92.031	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	-	IEA	Function
GO:0005198	structural molecule activity	21873635.	IBA	Function
GO:0005200	structural constituent of cytoskeleton	21873635.	IBA	Function
GO:0005200	structural constituent of cytoskeleton	12095991.	IMP	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005882	intermediate filament	21873635.	IBA	Component
GO:0005903	brush border	-	IEA	Component
GO:0005903	brush border	-	ISO	Component
GO:0005925	focal adhesion	21873635.	IBA	Component
GO:0005925	focal adhesion	-	IEA	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0007010	cytoskeleton organization	-	IEA	Process
GO:0007565	female pregnancy	12389737.	IEP	Process
GO:0007584	response to nutrient	12095991.	IDA	Process
GO:0008092	cytoskeletal protein binding	12095991.	IDA	Function
GO:0008307	structural constituent of muscle	21873635.	IBA	Function
GO:0008307	structural constituent of muscle	-	ISO	Function
GO:0009925	basal plasma membrane	12389737.	IDA	Component
GO:0016020	membrane	21873635.	IBA	Component
GO:0016324	apical plasma membrane	12389737.	IDA	Component
GO:0016528	sarcoplasm	21223964.	IDA	Component
GO:0030056	hemidesmosome	21873635.	IBA	Component
GO:0030056	hemidesmosome	-	IEA	Component
GO:0030056	hemidesmosome	-	ISO	Component
GO:0030056	hemidesmosome	-	ISS	Component
GO:0030506	ankyrin binding	21873635.	IBA	Function
GO:0030506	ankyrin binding	-	IEA	Function
GO:0030506	ankyrin binding	21223964.	IPI	Function
GO:0030506	ankyrin binding	-	ISO	Function
GO:0030855	epithelial cell differentiation	8686756.	IEP	Process
GO:0031581	hemidesmosome assembly	21873635.	IBA	Process
GO:0031581	hemidesmosome assembly	-	IEA	Process
GO:0031581	hemidesmosome assembly	-	ISO	Process
GO:0031581	hemidesmosome assembly	-	ISS	Process
GO:0042060	wound healing	21873635.	IBA	Process
GO:0042383	sarcolemma	21873635.	IBA	Component
GO:0042383	sarcolemma	11482454.21223964.	IDA	Component
GO:0042383	sarcolemma	-	IEA	Component
GO:0042383	sarcolemma	-	ISO	Component
GO:0043034	costamere	21223964.	TAS	Component
GO:0043292	contractile fiber	-	IEA	Component
GO:0043292	contractile fiber	-	ISO	Component
GO:0045104	intermediate filament cytoskeleton organization	21873635.	IBA	Process
GO:0045111	intermediate filament cytoskeleton	-	IEA	Component
GO:0045111	intermediate filament cytoskeleton	-	ISO	Component
GO:0047485	protein N-terminus binding	12200133.	IDA	Function
GO:0048471	perinuclear region of cytoplasm	21873635.	IBA	Component
GO:0048471	perinuclear region of cytoplasm	8686756.	IDA	Component