EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000024104 (Gene tree)
Gene ID: 291439
Gene Symbol: Mbd1
Alias: LOC291439
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 14452 bases
Position: chr18:70248713-70263164
Accession: 1305980
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000037640	MBD	PF01429.19	6.1e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000032202	-	2466	XM_006254909	ENSRNOP00000037640	533 (aa)	XP_006254971	Q66HB8

Gene Model

Click here to download ENSRNOG00000024104's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000024104's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000024104	Mbd1	96	60.927	ENSG00000141644	MBD1	80	85.714	Homo_sapiens
ENSRNOG00000024104	Mbd1	87	68.952	ENSAMEG00000000238	MBD1	95	46.440	Ailuropoda_melanoleuca
ENSRNOG00000024104	Mbd1	98	56.283	ENSANAG00000036253	MBD1	100	53.130	Aotus_nancymaae
ENSRNOG00000024104	Mbd1	86	69.355	ENSBTAG00000003801	MBD1	100	51.051	Bos_taurus
ENSRNOG00000024104	Mbd1	92	57.391	ENSCJAG00000004959	MBD1	99	52.098	Callithrix_jacchus
ENSRNOG00000024104	Mbd1	89	67.339	ENSCAFG00000018928	MBD1	76	67.220	Canis_familiaris
ENSRNOG00000024104	Mbd1	100	50.303	ENSCAFG00020024272	MBD1	100	46.757	Canis_lupus_dingo
ENSRNOG00000024104	Mbd1	96	49.191	ENSCHIG00000021134	MBD1	99	51.864	Capra_hircus
ENSRNOG00000024104	Mbd1	98	58.551	ENSTSYG00000000509	MBD1	99	51.536	Carlito_syrichta
ENSRNOG00000024104	Mbd1	100	54.466	ENSCAPG00000015782	MBD1	100	52.500	Cavia_aperea
ENSRNOG00000024104	Mbd1	100	53.228	ENSCPOG00000001671	MBD1	99	52.792	Cavia_porcellus
ENSRNOG00000024104	Mbd1	96	56.075	ENSCCAG00000034600	MBD1	99	54.217	Cebus_capucinus
ENSRNOG00000024104	Mbd1	96	55.308	ENSCATG00000029959	MBD1	99	52.257	Cercocebus_atys
ENSRNOG00000024104	Mbd1	96	50.938	ENSCLAG00000007457	MBD1	88	49.392	Chinchilla_lanigera
ENSRNOG00000024104	Mbd1	96	58.551	ENSCSAG00000018070	MBD1	99	51.535	Chlorocebus_sabaeus
ENSRNOG00000024104	Mbd1	86	70.124	ENSCANG00000033425	MBD1	99	57.371	Colobus_angolensis_palliatus
ENSRNOG00000024104	Mbd1	100	60.348	ENSCGRG00001014843	Mbd1	100	59.874	Cricetulus_griseus_chok1gshd
ENSRNOG00000024104	Mbd1	100	68.459	ENSCGRG00000014135	Mbd1	100	67.921	Cricetulus_griseus_crigri
ENSRNOG00000024104	Mbd1	89	69.710	ENSDNOG00000015998	MBD1	100	48.333	Dasypus_novemcinctus
ENSRNOG00000024104	Mbd1	100	57.659	ENSDORG00000013917	Mbd1	100	57.143	Dipodomys_ordii
ENSRNOG00000024104	Mbd1	98	62.937	ENSEASG00005003857	MBD1	99	51.910	Equus_asinus_asinus
ENSRNOG00000024104	Mbd1	100	49.623	ENSECAG00000011497	MBD1	79	51.696	Equus_caballus
ENSRNOG00000024104	Mbd1	100	51.740	ENSFCAG00000015730	MBD1	99	52.431	Felis_catus
ENSRNOG00000024104	Mbd1	98	57.293	ENSFDAG00000011085	MBD1	97	52.249	Fukomys_damarensis
ENSRNOG00000024104	Mbd1	86	70.539	ENSGGOG00000016966	MBD1	99	57.371	Gorilla_gorilla
ENSRNOG00000024104	Mbd1	96	52.537	ENSHGLG00000008740	MBD1	98	51.870	Heterocephalus_glaber_female
ENSRNOG00000024104	Mbd1	96	54.724	ENSHGLG00100005198	MBD1	98	50.171	Heterocephalus_glaber_male
ENSRNOG00000024104	Mbd1	100	53.135	ENSSTOG00000007780	MBD1	100	52.336	Ictidomys_tridecemlineatus
ENSRNOG00000024104	Mbd1	100	61.618	ENSJJAG00000022859	Mbd1	100	56.899	Jaculus_jaculus
ENSRNOG00000024104	Mbd1	100	55.224	ENSLAFG00000031328	MBD1	100	54.647	Loxodonta_africana
ENSRNOG00000024104	Mbd1	96	55.479	ENSMFAG00000026335	MBD1	99	52.431	Macaca_fascicularis
ENSRNOG00000024104	Mbd1	98	54.513	ENSMMUG00000009050	MBD1	96	52.870	Macaca_mulatta
ENSRNOG00000024104	Mbd1	96	55.479	ENSMNEG00000038822	MBD1	99	52.431	Macaca_nemestrina
ENSRNOG00000024104	Mbd1	96	55.308	ENSMLEG00000043121	MBD1	99	52.257	Mandrillus_leucophaeus
ENSRNOG00000024104	Mbd1	96	60.250	ENSMICG00000006414	MBD1	99	60.428	Microcebus_murinus
ENSRNOG00000024104	Mbd1	100	72.156	ENSMUSG00000024561	Mbd1	100	67.395	Mus_musculus
ENSRNOG00000024104	Mbd1	100	71.821	MGP_PahariEiJ_G0019128	Mbd1	100	67.857	Mus_pahari
ENSRNOG00000024104	Mbd1	100	79.012	MGP_SPRETEiJ_G0023304	Mbd1	100	79.424	Mus_spretus
ENSRNOG00000024104	Mbd1	96	48.131	ENSMPUG00000008843	MBD1	95	48.142	Mustela_putorius_furo
ENSRNOG00000024104	Mbd1	96	45.794	ENSMLUG00000008286	MBD1	95	44.720	Myotis_lucifugus
ENSRNOG00000024104	Mbd1	100	62.349	ENSNGAG00000011412	Mbd1	100	57.976	Nannospalax_galili
ENSRNOG00000024104	Mbd1	96	54.883	ENSNLEG00000032711	-	89	53.142	Nomascus_leucogenys
ENSRNOG00000024104	Mbd1	96	57.603	ENSNLEG00000011661	-	99	56.661	Nomascus_leucogenys
ENSRNOG00000024104	Mbd1	96	44.553	ENSOPRG00000007647	MBD1	99	43.902	Ochotona_princeps
ENSRNOG00000024104	Mbd1	100	58.997	ENSODEG00000018451	MBD1	100	54.795	Octodon_degus
ENSRNOG00000024104	Mbd1	96	48.125	ENSOCUG00000006554	MBD1	99	46.357	Oryctolagus_cuniculus
ENSRNOG00000024104	Mbd1	96	46.472	ENSOGAG00000003784	MBD1	87	54.709	Otolemur_garnettii
ENSRNOG00000024104	Mbd1	96	47.671	ENSOARG00000004218	MBD1	94	49.689	Ovis_aries
ENSRNOG00000024104	Mbd1	98	61.258	ENSPPAG00000038886	MBD1	99	55.272	Pan_paniscus
ENSRNOG00000024104	Mbd1	99	51.712	ENSPPRG00000021387	MBD1	99	52.257	Panthera_pardus
ENSRNOG00000024104	Mbd1	99	51.541	ENSPTIG00000021231	MBD1	99	52.019	Panthera_tigris_altaica
ENSRNOG00000024104	Mbd1	98	61.258	ENSPTRG00000010021	MBD1	99	55.272	Pan_troglodytes
ENSRNOG00000024104	Mbd1	98	57.699	ENSPANG00000010867	MBD1	96	52.696	Papio_anubis
ENSRNOG00000024104	Mbd1	100	66.955	ENSPEMG00000022630	Mbd1	100	63.462	Peromyscus_maniculatus_bairdii
ENSRNOG00000024104	Mbd1	96	51.212	ENSPPYG00000009158	MBD1	90	51.212	Pongo_abelii
ENSRNOG00000024104	Mbd1	86	68.145	ENSPCAG00000001648	MBD1	72	67.490	Procavia_capensis
ENSRNOG00000024104	Mbd1	96	60.357	ENSPCOG00000012450	MBD1	99	59.397	Propithecus_coquereli
ENSRNOG00000024104	Mbd1	96	60.596	ENSRBIG00000041294	MBD1	98	53.721	Rhinopithecus_bieti
ENSRNOG00000024104	Mbd1	86	70.124	ENSRROG00000032517	MBD1	99	56.838	Rhinopithecus_roxellana
ENSRNOG00000024104	Mbd1	98	58.416	ENSSBOG00000027169	MBD1	99	50.853	Saimiri_boliviensis_boliviensis
ENSRNOG00000024104	Mbd1	100	55.929	ENSSSCG00000004516	MBD1	100	55.888	Sus_scrofa
ENSRNOG00000024104	Mbd1	76	58.065	ENSTBEG00000012651	-	64	58.065	Tupaia_belangeri
ENSRNOG00000024104	Mbd1	96	51.378	ENSTTRG00000015523	MBD1	99	51.212	Tursiops_truncatus
ENSRNOG00000024104	Mbd1	91	68.145	ENSUAMG00000004752	MBD1	99	52.685	Ursus_americanus
ENSRNOG00000024104	Mbd1	89	69.295	ENSUMAG00000002947	MBD1	99	51.212	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000785	chromatin	-	ISO	Component
GO:0000790	nuclear chromatin	18689796.	IDA	Component
GO:0000792	heterochromatin	-	ISO	Component
GO:0003677	DNA binding	-	ISO	Function
GO:0003682	chromatin binding	18689796.	IDA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	19660178.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	19660178.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006346	methylation-dependent chromatin silencing	21873635.	IBA	Process
GO:0007507	heart development	20735989.	IEP	Process
GO:0007568	aging	16702315.	IEP	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008327	methyl-CpG binding	21873635.	IBA	Function
GO:0008327	methyl-CpG binding	-	ISO	Function
GO:0010385	double-stranded methylated DNA binding	-	ISO	Function
GO:0010629	negative regulation of gene expression	16881068.	IDA	Process
GO:0014070	response to organic cyclic compound	22109888.	IEP	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0030182	neuron differentiation	19660178.	IEP	Process
GO:0031667	response to nutrient levels	16702315.	IEP	Process
GO:0032355	response to estradiol	22109888.	IEP	Process
GO:0042220	response to cocaine	16670375.	IEP	Process
GO:0042493	response to drug	16670375.	IEP	Process
GO:0044030	regulation of DNA methylation	20735989.	IEP	Process
GO:0048712	negative regulation of astrocyte differentiation	16881068.	IDA	Process