EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000024135 (Gene tree)
Gene ID: 308654
Gene Symbol: Zmat1
Alias: LOC308654|RGD1565344
Full Name: zinc finger%2C matrin-type 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 29426 bases
Position: chrX:105805902-105835327
Accession: 1565344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000050228	zf-met	PF12874.7	1e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000042714	-	1938	XM_002730284	ENSRNOP00000050228	645 (aa)	XP_002727671	D3ZGI1

Gene Model

Click here to download ENSRNOG00000024135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000024135's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000024135	Zmat1	97	59.840	ENSG00000166432	ZMAT1	94	59.840	Homo_sapiens
ENSRNOG00000024135	Zmat1	97	59.265	ENSAMEG00000004976	ZMAT1	100	59.265	Ailuropoda_melanoleuca
ENSRNOG00000024135	Zmat1	97	57.552	ENSANAG00000028725	ZMAT1	100	60.066	Aotus_nancymaae
ENSRNOG00000024135	Zmat1	100	54.712	ENSBTAG00000003601	ZMAT1	87	55.455	Bos_taurus
ENSRNOG00000024135	Zmat1	97	57.870	ENSCJAG00000019724	ZMAT1	100	57.870	Callithrix_jacchus
ENSRNOG00000024135	Zmat1	97	58.852	ENSCAFG00000017730	ZMAT1	100	58.852	Canis_familiaris
ENSRNOG00000024135	Zmat1	73	61.814	ENSCAFG00020007319	ZMAT1	100	61.814	Canis_lupus_dingo
ENSRNOG00000024135	Zmat1	73	59.789	ENSCHIG00000010507	ZMAT1	100	59.789	Capra_hircus
ENSRNOG00000024135	Zmat1	96	58.065	ENSTSYG00000007330	ZMAT1	99	58.065	Carlito_syrichta
ENSRNOG00000024135	Zmat1	99	48.989	ENSCPOG00000000581	ZMAT1	99	49.145	Cavia_porcellus
ENSRNOG00000024135	Zmat1	97	58.665	ENSCCAG00000023924	ZMAT1	100	58.665	Cebus_capucinus
ENSRNOG00000024135	Zmat1	100	59.414	ENSCATG00000000551	ZMAT1	97	59.872	Cercocebus_atys
ENSRNOG00000024135	Zmat1	100	48.302	ENSCLAG00000004197	ZMAT1	100	48.377	Chinchilla_lanigera
ENSRNOG00000024135	Zmat1	100	62.866	ENSCSAG00000009795	ZMAT1	90	62.866	Chlorocebus_sabaeus
ENSRNOG00000024135	Zmat1	85	61.905	ENSCPBG00000001356	ZMAT1	96	50.000	Chrysemys_picta_bellii
ENSRNOG00000024135	Zmat1	96	60.258	ENSCANG00000037194	ZMAT1	99	59.968	Colobus_angolensis_palliatus
ENSRNOG00000024135	Zmat1	100	81.395	ENSCGRG00001023697	Zmat1	100	81.395	Cricetulus_griseus_chok1gshd
ENSRNOG00000024135	Zmat1	97	80.383	ENSCGRG00000001964	Zmat1	99	80.769	Cricetulus_griseus_crigri
ENSRNOG00000024135	Zmat1	73	43.340	ENSDNOG00000044924	-	85	53.846	Dasypus_novemcinctus
ENSRNOG00000024135	Zmat1	91	54.561	ENSDNOG00000014852	-	100	54.561	Dasypus_novemcinctus
ENSRNOG00000024135	Zmat1	100	55.573	ENSDORG00000006821	Zmat1	100	55.728	Dipodomys_ordii
ENSRNOG00000024135	Zmat1	96	46.290	ENSETEG00000020259	ZMAT1	99	45.806	Echinops_telfairi
ENSRNOG00000024135	Zmat1	96	56.960	ENSEASG00005014185	ZMAT1	93	56.960	Equus_asinus_asinus
ENSRNOG00000024135	Zmat1	100	61.111	ENSECAG00000013390	ZMAT1	100	63.924	Equus_caballus
ENSRNOG00000024135	Zmat1	96	57.532	ENSFCAG00000023394	ZMAT1	99	57.532	Felis_catus
ENSRNOG00000024135	Zmat1	99	50.233	ENSFDAG00000004063	ZMAT1	96	50.309	Fukomys_damarensis
ENSRNOG00000024135	Zmat1	97	59.840	ENSGGOG00000025784	ZMAT1	95	59.585	Gorilla_gorilla
ENSRNOG00000024135	Zmat1	100	49.768	ENSHGLG00000002494	ZMAT1	100	49.768	Heterocephalus_glaber_female
ENSRNOG00000024135	Zmat1	100	53.941	ENSHGLG00100004968	ZMAT1	100	53.941	Heterocephalus_glaber_male
ENSRNOG00000024135	Zmat1	87	62.811	ENSSTOG00000011140	ZMAT1	100	63.333	Ictidomys_tridecemlineatus
ENSRNOG00000024135	Zmat1	100	59.133	ENSJJAG00000020188	Zmat1	100	59.133	Jaculus_jaculus
ENSRNOG00000024135	Zmat1	91	51.074	ENSLAFG00000015656	ZMAT1	100	50.909	Loxodonta_africana
ENSRNOG00000024135	Zmat1	94	57.038	ENSMFAG00000042343	ZMAT1	90	56.727	Macaca_fascicularis
ENSRNOG00000024135	Zmat1	100	63.020	ENSMMUG00000002151	ZMAT1	100	63.020	Macaca_mulatta
ENSRNOG00000024135	Zmat1	100	62.558	ENSMNEG00000036310	ZMAT1	96	59.370	Macaca_nemestrina
ENSRNOG00000024135	Zmat1	98	59.528	ENSMLEG00000005031	ZMAT1	96	59.528	Mandrillus_leucophaeus
ENSRNOG00000024135	Zmat1	100	80.465	ENSMAUG00000002941	Zmat1	100	80.465	Mesocricetus_auratus
ENSRNOG00000024135	Zmat1	96	60.737	ENSMICG00000003313	ZMAT1	99	60.737	Microcebus_murinus
ENSRNOG00000024135	Zmat1	100	76.124	ENSMOCG00000000169	Zmat1	100	76.124	Microtus_ochrogaster
ENSRNOG00000024135	Zmat1	100	84.853	ENSMUSG00000052676	Zmat1	100	84.853	Mus_musculus
ENSRNOG00000024135	Zmat1	100	86.090	MGP_PahariEiJ_G0031943	Zmat1	100	86.090	Mus_pahari
ENSRNOG00000024135	Zmat1	100	84.877	MGP_SPRETEiJ_G0034567	Zmat1	100	84.877	Mus_spretus
ENSRNOG00000024135	Zmat1	96	51.371	ENSMPUG00000002130	ZMAT1	99	51.156	Mustela_putorius_furo
ENSRNOG00000024135	Zmat1	97	55.343	ENSMLUG00000004417	ZMAT1	100	54.545	Myotis_lucifugus
ENSRNOG00000024135	Zmat1	100	71.318	ENSNGAG00000006608	Zmat1	100	71.318	Nannospalax_galili
ENSRNOG00000024135	Zmat1	97	55.911	ENSNLEG00000030520	ZMAT1	94	55.911	Nomascus_leucogenys
ENSRNOG00000024135	Zmat1	63	53.041	ENSOPRG00000009950	-	100	53.041	Ochotona_princeps
ENSRNOG00000024135	Zmat1	84	50.360	ENSOCUG00000004164	ZMAT1	86	50.540	Oryctolagus_cuniculus
ENSRNOG00000024135	Zmat1	97	59.585	ENSOGAG00000033601	ZMAT1	100	59.585	Otolemur_garnettii
ENSRNOG00000024135	Zmat1	96	57.348	ENSOARG00000001897	ZMAT1	99	57.348	Ovis_aries
ENSRNOG00000024135	Zmat1	97	60.000	ENSPPAG00000039554	ZMAT1	95	59.873	Pan_paniscus
ENSRNOG00000024135	Zmat1	96	57.372	ENSPPRG00000005258	ZMAT1	99	57.372	Panthera_pardus
ENSRNOG00000024135	Zmat1	96	57.532	ENSPTIG00000019057	ZMAT1	99	57.532	Panthera_tigris_altaica
ENSRNOG00000024135	Zmat1	100	62.906	ENSPTRG00000041840	ZMAT1	95	60.032	Pan_troglodytes
ENSRNOG00000024135	Zmat1	100	82.508	ENSPEMG00000009944	Zmat1	100	82.508	Peromyscus_maniculatus_bairdii
ENSRNOG00000024135	Zmat1	97	57.348	ENSPPYG00000020561	ZMAT1	93	57.348	Pongo_abelii
ENSRNOG00000024135	Zmat1	87	54.918	ENSPCAG00000010283	ZMAT1	94	54.918	Procavia_capensis
ENSRNOG00000024135	Zmat1	96	59.520	ENSPCOG00000021386	ZMAT1	99	59.520	Propithecus_coquereli
ENSRNOG00000024135	Zmat1	96	59.390	ENSPVAG00000013206	ZMAT1	99	59.390	Pteropus_vampyrus
ENSRNOG00000024135	Zmat1	95	60.458	ENSRBIG00000034121	ZMAT1	94	60.458	Rhinopithecus_bieti
ENSRNOG00000024135	Zmat1	96	60.161	ENSRROG00000036747	ZMAT1	93	60.161	Rhinopithecus_roxellana
ENSRNOG00000024135	Zmat1	97	57.870	ENSSBOG00000029970	ZMAT1	100	60.396	Saimiri_boliviensis_boliviensis
ENSRNOG00000024135	Zmat1	95	40.304	ENSSHAG00000011087	-	100	40.230	Sarcophilus_harrisii
ENSRNOG00000024135	Zmat1	60	49.767	ENSSARG00000003063	-	61	50.463	Sorex_araneus
ENSRNOG00000024135	Zmat1	89	32.852	ENSSPUG00000004951	ZMAT1	92	32.121	Sphenodon_punctatus
ENSRNOG00000024135	Zmat1	96	61.440	ENSSSCG00000012512	ZMAT1	100	63.848	Sus_scrofa
ENSRNOG00000024135	Zmat1	91	57.627	ENSTBEG00000012967	ZMAT1	100	57.627	Tupaia_belangeri
ENSRNOG00000024135	Zmat1	96	59.295	ENSTTRG00000016662	ZMAT1	99	58.654	Tursiops_truncatus
ENSRNOG00000024135	Zmat1	73	62.658	ENSUAMG00000015209	ZMAT1	100	62.658	Ursus_americanus
ENSRNOG00000024135	Zmat1	73	62.658	ENSUMAG00000000627	ZMAT1	100	62.658	Ursus_maritimus
ENSRNOG00000024135	Zmat1	96	61.699	ENSVPAG00000006267	ZMAT1	99	61.699	Vicugna_pacos
ENSRNOG00000024135	Zmat1	100	61.574	ENSVVUG00000005342	ZMAT1	90	61.574	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function