EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000024170 (Gene tree)
Gene ID
192246
Gene Symbol
Phf5a
Alias
Ac2-246|Loc192246
Full Name
PHD finger protein 5A
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
6582 bases
Position
chr7:123095288-123101869
Accession
621555
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000005837PHF5PF03660.141.6e-4911
ENSRNOP00000073368PHF5PF03660.147.6e-4011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000005837-873-ENSRNOP00000005837110 (aa)-P83871
ENSRNOT00000090984-309-ENSRNOP00000073368102 (aa)-Q7TPJ6
Gene Model
Click here to download ENSRNOG00000024170's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000024170's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000024170Phf5a100100.000ENSG00000100410PHF5A100100.000Homo_sapiens
ENSRNOG00000024170Phf5a100100.000ENSAPOG00000017805phf5a100100.000Acanthochromis_polyacanthus
ENSRNOG00000024170Phf5a74100.000ENSAMEG00000015687PHF5A100100.000Ailuropoda_melanoleuca
ENSRNOG00000024170Phf5a100100.000ENSACIG00000021628phf5a100100.000Amphilophus_citrinellus
ENSRNOG00000024170Phf5a100100.000ENSAOCG00000020917phf5a100100.000Amphiprion_ocellaris
ENSRNOG00000024170Phf5a100100.000ENSAPEG00000020260phf5a100100.000Amphiprion_percula
ENSRNOG00000024170Phf5a100100.000ENSATEG00000006506phf5a100100.000Anabas_testudineus
ENSRNOG00000024170Phf5a100100.000ENSATEG00000007455phf5a100100.000Anabas_testudineus
ENSRNOG00000024170Phf5a100100.000ENSACAG00000004775PHF5A100100.000Anolis_carolinensis
ENSRNOG00000024170Phf5a10081.818ENSANAG00000022538-10081.818Aotus_nancymaae
ENSRNOG00000024170Phf5a9994.059ENSANAG00000020141-9294.059Aotus_nancymaae
ENSRNOG00000024170Phf5a100100.000ENSANAG00000028988-100100.000Aotus_nancymaae
ENSRNOG00000024170Phf5a10082.727ENSANAG00000036831-10082.727Aotus_nancymaae
ENSRNOG00000024170Phf5a100100.000ENSACLG00000019161phf5a100100.000Astatotilapia_calliptera
ENSRNOG00000024170Phf5a100100.000ENSAMXG00000035422phf5a100100.000Astyanax_mexicanus
ENSRNOG00000024170Phf5a100100.000ENSBTAG00000006423PHF5A100100.000Bos_taurus
ENSRNOG00000024170Phf5a9990.826WBGene00004016phf-59990.826Caenorhabditis_elegans
ENSRNOG00000024170Phf5a100100.000ENSCJAG00000004999PHF5A100100.000Callithrix_jacchus
ENSRNOG00000024170Phf5a100100.000ENSCAFG00000001090PHF5A100100.000Canis_familiaris
ENSRNOG00000024170Phf5a100100.000ENSCAFG00020001984PHF5A100100.000Canis_lupus_dingo
ENSRNOG00000024170Phf5a10095.327ENSCHIG00000015826PHF5A10095.327Capra_hircus
ENSRNOG00000024170Phf5a100100.000ENSTSYG00000001082PHF5A100100.000Carlito_syrichta
ENSRNOG00000024170Phf5a82100.000ENSCAPG00000007769PHF5A87100.000Cavia_aperea
ENSRNOG00000024170Phf5a100100.000ENSCPOG00000033309PHF5A100100.000Cavia_porcellus
ENSRNOG00000024170Phf5a10067.273ENSCCAG00000009204-10067.273Cebus_capucinus
ENSRNOG00000024170Phf5a10085.294ENSCCAG00000037275-10085.294Cebus_capucinus
ENSRNOG00000024170Phf5a100100.000ENSCCAG00000037141-100100.000Cebus_capucinus
ENSRNOG00000024170Phf5a100100.000ENSCATG00000012251PHF5A100100.000Cercocebus_atys
ENSRNOG00000024170Phf5a10069.369ENSCLAG00000014324-10069.369Chinchilla_lanigera
ENSRNOG00000024170Phf5a100100.000ENSCLAG00000016714-100100.000Chinchilla_lanigera
ENSRNOG00000024170Phf5a100100.000ENSCSAG00000005811PHF5A100100.000Chlorocebus_sabaeus
ENSRNOG00000024170Phf5a10090.909ENSCHOG00000003545PHF5A10090.909Choloepus_hoffmanni
ENSRNOG00000024170Phf5a100100.000ENSCPBG00000020547PHF5A100100.000Chrysemys_picta_bellii
ENSRNOG00000024170Phf5a10097.273ENSCSAVG00000007539-10097.273Ciona_savignyi
ENSRNOG00000024170Phf5a100100.000ENSCANG00000032125PHF5A100100.000Colobus_angolensis_palliatus
ENSRNOG00000024170Phf5a100100.000ENSCGRG00001017936Phf5a100100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000024170Phf5a100100.000ENSCGRG00000012081Phf5a100100.000Cricetulus_griseus_crigri
ENSRNOG00000024170Phf5a100100.000ENSCSEG00000020499phf5a100100.000Cynoglossus_semilaevis
ENSRNOG00000024170Phf5a100100.000ENSCVAG00000006090phf5a100100.000Cyprinodon_variegatus
ENSRNOG00000024170Phf5a100100.000ENSDARG00000045155phf5a100100.000Danio_rerio
ENSRNOG00000024170Phf5a74100.000ENSDNOG00000034362PHF5A70100.000Dasypus_novemcinctus
ENSRNOG00000024170Phf5a100100.000ENSDORG00000002205Phf5a100100.000Dipodomys_ordii
ENSRNOG00000024170Phf5a9996.330FBgn0031822Phf5a9896.330Drosophila_melanogaster
ENSRNOG00000024170Phf5a100100.000ENSETEG00000010741PHF5A100100.000Echinops_telfairi
ENSRNOG00000024170Phf5a10098.077ENSEBUG00000009125-10098.077Eptatretus_burgeri
ENSRNOG00000024170Phf5a100100.000ENSEASG00005001560PHF5A100100.000Equus_asinus_asinus
ENSRNOG00000024170Phf5a100100.000ENSECAG00000023225PHF5A100100.000Equus_caballus
ENSRNOG00000024170Phf5a100100.000ENSELUG00000019796phf5a100100.000Esox_lucius
ENSRNOG00000024170Phf5a100100.000ENSFCAG00000003676PHF5A100100.000Felis_catus
ENSRNOG00000024170Phf5a85100.000ENSFALG00000011963PHF5A100100.000Ficedula_albicollis
ENSRNOG00000024170Phf5a100100.000ENSFDAG00000010822PHF5A100100.000Fukomys_damarensis
ENSRNOG00000024170Phf5a100100.000ENSFHEG00000012724phf5a100100.000Fundulus_heteroclitus
ENSRNOG00000024170Phf5a99100.000ENSGMOG00000013318phf5a98100.000Gadus_morhua
ENSRNOG00000024170Phf5a100100.000ENSGALG00000011953PHF5A100100.000Gallus_gallus
ENSRNOG00000024170Phf5a100100.000ENSGAFG00000008235phf5a100100.000Gambusia_affinis
ENSRNOG00000024170Phf5a100100.000ENSGACG00000004777phf5a100100.000Gasterosteus_aculeatus
ENSRNOG00000024170Phf5a100100.000ENSGAGG00000017494PHF5A100100.000Gopherus_agassizii
ENSRNOG00000024170Phf5a100100.000ENSGGOG00000001104PHF5A100100.000Gorilla_gorilla
ENSRNOG00000024170Phf5a100100.000ENSHBUG00000004040phf5a10092.593Haplochromis_burtoni
ENSRNOG00000024170Phf5a100100.000ENSHGLG00000012537PHF5A100100.000Heterocephalus_glaber_female
ENSRNOG00000024170Phf5a9990.826ENSHGLG00000020143-10090.826Heterocephalus_glaber_female
ENSRNOG00000024170Phf5a7495.062ENSHGLG00100000188-8695.062Heterocephalus_glaber_male
ENSRNOG00000024170Phf5a10080.292ENSHCOG00000010129phf5a10080.292Hippocampus_comes
ENSRNOG00000024170Phf5a100100.000ENSIPUG00000001222phf5a100100.000Ictalurus_punctatus
ENSRNOG00000024170Phf5a100100.000ENSSTOG00000016207PHF5A100100.000Ictidomys_tridecemlineatus
ENSRNOG00000024170Phf5a100100.000ENSJJAG00000011261Phf5a100100.000Jaculus_jaculus
ENSRNOG00000024170Phf5a100100.000ENSKMAG00000006739phf5a100100.000Kryptolebias_marmoratus
ENSRNOG00000024170Phf5a100100.000ENSLBEG00000002141phf5a100100.000Labrus_bergylta
ENSRNOG00000024170Phf5a74100.000ENSLACG00000012094PHF5A87100.000Latimeria_chalumnae
ENSRNOG00000024170Phf5a100100.000ENSLAFG00000028840PHF5A100100.000Loxodonta_africana
ENSRNOG00000024170Phf5a100100.000ENSMFAG00000003129PHF5A100100.000Macaca_fascicularis
ENSRNOG00000024170Phf5a10093.636ENSMMUG00000011354-10093.636Macaca_mulatta
ENSRNOG00000024170Phf5a7487.654ENSMMUG00000019698-10087.654Macaca_mulatta
ENSRNOG00000024170Phf5a9784.112ENSMNEG00000010618-9684.112Macaca_nemestrina
ENSRNOG00000024170Phf5a100100.000ENSMNEG00000045104PHF5A100100.000Macaca_nemestrina
ENSRNOG00000024170Phf5a8891.753ENSMLEG00000038352-8491.753Mandrillus_leucophaeus
ENSRNOG00000024170Phf5a100100.000ENSMLEG00000037662PHF5A100100.000Mandrillus_leucophaeus
ENSRNOG00000024170Phf5a100100.000ENSMAMG00000003744phf5a100100.000Mastacembelus_armatus
ENSRNOG00000024170Phf5a100100.000ENSMZEG00005019188phf5a74100.000Maylandia_zebra
ENSRNOG00000024170Phf5a100100.000ENSMGAG00000012169PHF5A100100.000Meleagris_gallopavo
ENSRNOG00000024170Phf5a100100.000ENSMAUG00000017124Phf5a100100.000Mesocricetus_auratus
ENSRNOG00000024170Phf5a100100.000ENSMICG00000013520PHF5A100100.000Microcebus_murinus
ENSRNOG00000024170Phf5a100100.000ENSMOCG00000015149Phf5a100100.000Microtus_ochrogaster
ENSRNOG00000024170Phf5a100100.000ENSMMOG00000003636phf5a100100.000Mola_mola
ENSRNOG00000024170Phf5a100100.000ENSMODG00000016556PHF5A100100.000Monodelphis_domestica
ENSRNOG00000024170Phf5a100100.000ENSMALG00000008655phf5a100100.000Monopterus_albus
ENSRNOG00000024170Phf5a100100.000MGP_CAROLIEiJ_G0020061Phf5a100100.000Mus_caroli
ENSRNOG00000024170Phf5a100100.000ENSMUSG00000061360Phf5a100100.000Mus_musculus
ENSRNOG00000024170Phf5a100100.000MGP_PahariEiJ_G0020063Phf5a100100.000Mus_pahari
ENSRNOG00000024170Phf5a100100.000ENSMPUG00000016398PHF5A100100.000Mustela_putorius_furo
ENSRNOG00000024170Phf5a100100.000ENSMLUG00000002465PHF5A100100.000Myotis_lucifugus
ENSRNOG00000024170Phf5a100100.000ENSNGAG00000001430Phf5a100100.000Nannospalax_galili
ENSRNOG00000024170Phf5a100100.000ENSNBRG00000004747phf5a100100.000Neolamprologus_brichardi
ENSRNOG00000024170Phf5a74100.000ENSNLEG00000015481-100100.000Nomascus_leucogenys
ENSRNOG00000024170Phf5a84100.000ENSMEUG00000002019PHF5A100100.000Notamacropus_eugenii
ENSRNOG00000024170Phf5a100100.000ENSOPRG00000000358PHF5A100100.000Ochotona_princeps
ENSRNOG00000024170Phf5a10085.455ENSODEG00000012449-10085.455Octodon_degus
ENSRNOG00000024170Phf5a100100.000ENSODEG00000013125-100100.000Octodon_degus
ENSRNOG00000024170Phf5a100100.000ENSONIG00000019693phf5a100100.000Oreochromis_niloticus
ENSRNOG00000024170Phf5a85100.000ENSOANG00000000616-100100.000Ornithorhynchus_anatinus
ENSRNOG00000024170Phf5a100100.000ENSOCUG00000012705PHF5A100100.000Oryctolagus_cuniculus
ENSRNOG00000024170Phf5a100100.000ENSORLG00000002591phf5a100100.000Oryzias_latipes
ENSRNOG00000024170Phf5a100100.000ENSORLG00020007407phf5a100100.000Oryzias_latipes_hni
ENSRNOG00000024170Phf5a100100.000ENSORLG00015006160phf5a100100.000Oryzias_latipes_hsok
ENSRNOG00000024170Phf5a100100.000ENSOMEG00000008564phf5a100100.000Oryzias_melastigma
ENSRNOG00000024170Phf5a100100.000ENSOGAG00000002839-100100.000Otolemur_garnettii
ENSRNOG00000024170Phf5a10088.182ENSOGAG00000032258-10088.182Otolemur_garnettii
ENSRNOG00000024170Phf5a10097.273ENSOGAG00000025336-10097.273Otolemur_garnettii
ENSRNOG00000024170Phf5a100100.000ENSOARG00000018246PHF5A99100.000Ovis_aries
ENSRNOG00000024170Phf5a100100.000ENSPPAG00000008422PHF5A100100.000Pan_paniscus
ENSRNOG00000024170Phf5a100100.000ENSPPRG00000006194PHF5A100100.000Panthera_pardus
ENSRNOG00000024170Phf5a100100.000ENSPTIG00000014228PHF5A100100.000Panthera_tigris_altaica
ENSRNOG00000024170Phf5a100100.000ENSPTRG00000014427PHF5A100100.000Pan_troglodytes
ENSRNOG00000024170Phf5a10074.545ENSPTRG00000050019-10074.545Pan_troglodytes
ENSRNOG00000024170Phf5a100100.000ENSPANG00000011337PHF5A100100.000Papio_anubis
ENSRNOG00000024170Phf5a10098.182ENSPKIG00000003100phf5a10098.182Paramormyrops_kingsleyae
ENSRNOG00000024170Phf5a100100.000ENSPSIG00000007014PHF5A100100.000Pelodiscus_sinensis
ENSRNOG00000024170Phf5a72100.000ENSPMGG00000003502phf5a59100.000Periophthalmus_magnuspinnatus
ENSRNOG00000024170Phf5a100100.000ENSPMAG00000002668phf5a100100.000Petromyzon_marinus
ENSRNOG00000024170Phf5a100100.000ENSPFOG00000016814phf5a100100.000Poecilia_formosa
ENSRNOG00000024170Phf5a100100.000ENSPLAG00000001292phf5a100100.000Poecilia_latipinna
ENSRNOG00000024170Phf5a100100.000ENSPMEG00000010165phf5a100100.000Poecilia_mexicana
ENSRNOG00000024170Phf5a100100.000ENSPREG00000020700phf5a100100.000Poecilia_reticulata
ENSRNOG00000024170Phf5a100100.000ENSPPYG00000011870PHF5A100100.000Pongo_abelii
ENSRNOG00000024170Phf5a100100.000ENSPCAG00000009709PHF5A100100.000Procavia_capensis
ENSRNOG00000024170Phf5a100100.000ENSPCOG00000014332PHF5A100100.000Propithecus_coquereli
ENSRNOG00000024170Phf5a100100.000ENSPVAG00000001162PHF5A100100.000Pteropus_vampyrus
ENSRNOG00000024170Phf5a100100.000ENSPNYG00000004375phf5a100100.000Pundamilia_nyererei
ENSRNOG00000024170Phf5a100100.000ENSPNAG00000011460phf5a100100.000Pygocentrus_nattereri
ENSRNOG00000024170Phf5a74100.000ENSRBIG00000030586-92100.000Rhinopithecus_bieti
ENSRNOG00000024170Phf5a10071.845ENSRBIG00000044640-10071.845Rhinopithecus_bieti
ENSRNOG00000024170Phf5a100100.000ENSRROG00000038952PHF5A100100.000Rhinopithecus_roxellana
ENSRNOG00000024170Phf5a9556.190YPR094W-9856.190Saccharomyces_cerevisiae
ENSRNOG00000024170Phf5a74100.000ENSSBOG00000025096-76100.000Saimiri_boliviensis_boliviensis
ENSRNOG00000024170Phf5a8783.516ENSSBOG00000019049-10083.516Saimiri_boliviensis_boliviensis
ENSRNOG00000024170Phf5a10088.235ENSSHAG00000009937PHF5A10088.235Sarcophilus_harrisii
ENSRNOG00000024170Phf5a100100.000ENSSFOG00015013765phf5a100100.000Scleropages_formosus
ENSRNOG00000024170Phf5a100100.000ENSSMAG00000007054phf5a100100.000Scophthalmus_maximus
ENSRNOG00000024170Phf5a100100.000ENSSDUG00000008019phf5a100100.000Seriola_dumerili
ENSRNOG00000024170Phf5a8387.912ENSSLDG00000011535-10087.912Seriola_lalandi_dorsalis
ENSRNOG00000024170Phf5a100100.000ENSSLDG00000009619phf5a100100.000Seriola_lalandi_dorsalis
ENSRNOG00000024170Phf5a10099.091ENSSARG00000003769PHF5A10099.091Sorex_araneus
ENSRNOG00000024170Phf5a10099.091ENSSPUG00000011593PHF5A10099.091Sphenodon_punctatus
ENSRNOG00000024170Phf5a100100.000ENSSPAG00000022955phf5a100100.000Stegastes_partitus
ENSRNOG00000024170Phf5a100100.000ENSSSCG00000035082PHF5A100100.000Sus_scrofa
ENSRNOG00000024170Phf5a85100.000ENSTGUG00000009936PHF5A100100.000Taeniopygia_guttata
ENSRNOG00000024170Phf5a100100.000ENSTRUG00000023867phf5a100100.000Takifugu_rubripes
ENSRNOG00000024170Phf5a100100.000ENSTNIG00000012939phf5a100100.000Tetraodon_nigroviridis
ENSRNOG00000024170Phf5a10090.909ENSTBEG00000010945PHF5A10090.909Tupaia_belangeri
ENSRNOG00000024170Phf5a100100.000ENSTTRG00000003369PHF5A100100.000Tursiops_truncatus
ENSRNOG00000024170Phf5a74100.000ENSUAMG00000022580PHF5A95100.000Ursus_americanus
ENSRNOG00000024170Phf5a10095.327ENSUMAG00000021030PHF5A10095.327Ursus_maritimus
ENSRNOG00000024170Phf5a84100.000ENSVPAG00000002614PHF5A100100.000Vicugna_pacos
ENSRNOG00000024170Phf5a100100.000ENSVVUG00000003634PHF5A100100.000Vulpes_vulpes
ENSRNOG00000024170Phf5a100100.000ENSXETG00000006893phf5a100100.000Xenopus_tropicalis
ENSRNOG00000024170Phf5a100100.000ENSXCOG00000000364phf5a100100.000Xiphophorus_couchianus
ENSRNOG00000024170Phf5a74100.000ENSXMAG00000000679phf5a92100.000Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISSProcess
GO:0003677DNA binding-IEAFunction
GO:0003700DNA-binding transcription factor activity12810571.IDAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0005686U2 snRNP-ISOComponent
GO:0005686U2 snRNP-ISSComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0005689U12-type spliceosomal complex-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0016363nuclear matrix-IEAComponent
GO:0016363nuclear matrix-ISOComponent
GO:0016607nuclear speck-ISOComponent
GO:0016607nuclear speck-ISSComponent
GO:0045893positive regulation of transcription, DNA-templated12810571.IDAProcess
GO:0046872metal ion binding-IEAFunction
GO:0071005U2-type precatalytic spliceosome-IEAComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent

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