EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000024278 (Gene tree)
Gene ID: 361545
Gene Symbol: Rbm42
Alias: LOC361545|RGD1306184
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 9954 bases
Position: chr1:89099277-89109230
Accession: 1306184
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000070333	RRM_1	PF00076.22	6.1e-18	1	1
ENSRNOP00000029729	RRM_1	PF00076.22	6.7e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000031254	-	1664	-	ENSRNOP00000029729	478 (aa)	-	G3V8X1
ENSRNOT00000087437	-	1600	XM_006228781	ENSRNOP00000070333	449 (aa)	XP_006228843	A0A0G2JXM6

Gene Model

Click here to download ENSRNOG00000024278's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000024278's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000024278	Rbm42	99	97.292	ENSG00000126254	RBM42	100	100.000	Homo_sapiens
ENSRNOG00000024278	Rbm42	99	97.077	ENSAMEG00000000524	RBM42	100	97.077	Ailuropoda_melanoleuca
ENSRNOG00000024278	Rbm42	99	97.275	ENSANAG00000027537	RBM42	100	100.000	Aotus_nancymaae
ENSRNOG00000024278	Rbm42	99	97.065	ENSBTAG00000013440	RBM42	100	97.065	Bos_taurus
ENSRNOG00000024278	Rbm42	99	97.768	ENSCJAG00000010220	RBM42	100	100.000	Callithrix_jacchus
ENSRNOG00000024278	Rbm42	99	90.776	ENSCAFG00020018628	RBM42	96	100.000	Canis_lupus_dingo
ENSRNOG00000024278	Rbm42	99	97.098	ENSCHIG00000009518	RBM42	100	97.098	Capra_hircus
ENSRNOG00000024278	Rbm42	99	97.071	ENSTSYG00000014688	RBM42	100	100.000	Carlito_syrichta
ENSRNOG00000024278	Rbm42	81	98.187	ENSCAPG00000009566	RBM42	99	98.187	Cavia_aperea
ENSRNOG00000024278	Rbm42	99	96.896	ENSCPOG00000012365	RBM42	99	96.896	Cavia_porcellus
ENSRNOG00000024278	Rbm42	99	97.904	ENSCCAG00000034440	RBM42	100	100.000	Cebus_capucinus
ENSRNOG00000024278	Rbm42	99	97.269	ENSCATG00000041924	RBM42	100	100.000	Cercocebus_atys
ENSRNOG00000024278	Rbm42	99	96.896	ENSCLAG00000012865	RBM42	99	96.896	Chinchilla_lanigera
ENSRNOG00000024278	Rbm42	99	96.896	ENSCSAG00000004422	RBM42	100	96.896	Chlorocebus_sabaeus
ENSRNOG00000024278	Rbm42	99	88.608	ENSCANG00000030272	RBM42	100	88.608	Colobus_angolensis_palliatus
ENSRNOG00000024278	Rbm42	99	98.323	ENSCGRG00001018540	Rbm42	99	98.323	Cricetulus_griseus_chok1gshd
ENSRNOG00000024278	Rbm42	99	96.458	ENSDNOG00000037397	RBM42	100	96.458	Dasypus_novemcinctus
ENSRNOG00000024278	Rbm42	99	97.545	ENSDORG00000013001	Rbm42	99	97.545	Dipodomys_ordii
ENSRNOG00000024278	Rbm42	75	90.909	ENSETEG00000007878	RBM42	73	90.909	Echinops_telfairi
ENSRNOG00000024278	Rbm42	99	98.427	ENSEASG00005001074	RBM42	100	98.427	Equus_asinus_asinus
ENSRNOG00000024278	Rbm42	99	98.427	ENSECAG00000018215	RBM42	100	98.427	Equus_caballus
ENSRNOG00000024278	Rbm42	99	97.484	ENSFCAG00000006376	RBM42	100	100.000	Felis_catus
ENSRNOG00000024278	Rbm42	99	96.667	ENSFDAG00000007440	RBM42	99	96.667	Fukomys_damarensis
ENSRNOG00000024278	Rbm42	99	97.479	ENSGGOG00000009972	RBM42	100	100.000	Gorilla_gorilla
ENSRNOG00000024278	Rbm42	97	95.872	ENSHGLG00000008418	RBM42	99	95.759	Heterocephalus_glaber_female
ENSRNOG00000024278	Rbm42	97	95.872	ENSHGLG00100018667	RBM42	99	95.759	Heterocephalus_glaber_male
ENSRNOG00000024278	Rbm42	99	97.783	ENSSTOG00000013050	RBM42	99	97.783	Ictidomys_tridecemlineatus
ENSRNOG00000024278	Rbm42	99	97.758	ENSJJAG00000010421	Rbm42	99	97.758	Jaculus_jaculus
ENSRNOG00000024278	Rbm42	97	92.719	ENSLAFG00000014993	RBM42	100	91.250	Loxodonta_africana
ENSRNOG00000024278	Rbm42	99	97.269	ENSMFAG00000002758	RBM42	100	100.000	Macaca_fascicularis
ENSRNOG00000024278	Rbm42	100	96.882	ENSMMUG00000018954	RBM42	100	100.000	Macaca_mulatta
ENSRNOG00000024278	Rbm42	99	97.083	ENSMNEG00000030009	RBM42	100	100.000	Macaca_nemestrina
ENSRNOG00000024278	Rbm42	99	97.269	ENSMLEG00000036119	RBM42	100	100.000	Mandrillus_leucophaeus
ENSRNOG00000024278	Rbm42	99	98.113	ENSMICG00000009880	RBM42	100	100.000	Microcebus_murinus
ENSRNOG00000024278	Rbm42	99	98.323	ENSMOCG00000000405	Rbm42	99	98.323	Microtus_ochrogaster
ENSRNOG00000024278	Rbm42	100	99.372	MGP_CAROLIEiJ_G0029536	Rbm42	100	99.372	Mus_caroli
ENSRNOG00000024278	Rbm42	100	99.372	ENSMUSG00000036733	Rbm42	100	99.372	Mus_musculus
ENSRNOG00000024278	Rbm42	100	99.372	MGP_PahariEiJ_G0012770	Rbm42	100	99.372	Mus_pahari
ENSRNOG00000024278	Rbm42	100	99.372	MGP_SPRETEiJ_G0030632	Rbm42	100	99.372	Mus_spretus
ENSRNOG00000024278	Rbm42	99	97.545	ENSMPUG00000006288	RBM42	100	97.545	Mustela_putorius_furo
ENSRNOG00000024278	Rbm42	99	96.226	ENSMLUG00000011334	RBM42	100	96.226	Myotis_lucifugus
ENSRNOG00000024278	Rbm42	99	97.065	ENSNGAG00000019698	Rbm42	99	97.065	Nannospalax_galili
ENSRNOG00000024278	Rbm42	70	98.802	ENSNLEG00000011272	-	94	91.899	Nomascus_leucogenys
ENSRNOG00000024278	Rbm42	95	83.007	ENSMEUG00000016300	RBM42	100	81.988	Notamacropus_eugenii
ENSRNOG00000024278	Rbm42	99	93.082	ENSOPRG00000001229	RBM42	100	91.195	Ochotona_princeps
ENSRNOG00000024278	Rbm42	99	96.896	ENSODEG00000013705	RBM42	99	96.896	Octodon_degus
ENSRNOG00000024278	Rbm42	99	96.674	ENSOCUG00000003337	RBM42	100	96.674	Oryctolagus_cuniculus
ENSRNOG00000024278	Rbm42	99	97.065	ENSOGAG00000004144	RBM42	100	97.065	Otolemur_garnettii
ENSRNOG00000024278	Rbm42	97	88.437	ENSOARG00000004926	RBM42	99	91.441	Ovis_aries
ENSRNOG00000024278	Rbm42	99	97.694	ENSPPAG00000037315	RBM42	100	100.000	Pan_paniscus
ENSRNOG00000024278	Rbm42	99	97.484	ENSPPRG00000016784	RBM42	100	100.000	Panthera_pardus
ENSRNOG00000024278	Rbm42	99	97.065	ENSPTIG00000019270	RBM42	100	100.000	Panthera_tigris_altaica
ENSRNOG00000024278	Rbm42	99	97.479	ENSPTRG00000010852	RBM42	100	100.000	Pan_troglodytes
ENSRNOG00000024278	Rbm42	99	97.468	ENSPANG00000017032	RBM42	100	100.000	Papio_anubis
ENSRNOG00000024278	Rbm42	99	99.371	ENSPEMG00000012065	Rbm42	99	99.371	Peromyscus_maniculatus_bairdii
ENSRNOG00000024278	Rbm42	99	96.289	ENSPPYG00000009871	RBM42	100	96.289	Pongo_abelii
ENSRNOG00000024278	Rbm42	88	97.049	ENSPCAG00000013053	RBM42	100	84.277	Procavia_capensis
ENSRNOG00000024278	Rbm42	70	99.099	ENSPCOG00000020672	RBM42	81	99.099	Propithecus_coquereli
ENSRNOG00000024278	Rbm42	99	98.113	ENSPCOG00000026433	-	100	100.000	Propithecus_coquereli
ENSRNOG00000024278	Rbm42	99	97.065	ENSPVAG00000012815	RBM42	100	97.065	Pteropus_vampyrus
ENSRNOG00000024278	Rbm42	99	97.269	ENSRBIG00000007566	RBM42	100	100.000	Rhinopithecus_bieti
ENSRNOG00000024278	Rbm42	99	97.694	ENSRROG00000042313	RBM42	100	100.000	Rhinopithecus_roxellana
ENSRNOG00000024278	Rbm42	85	98.768	ENSSBOG00000030666	RBM42	100	98.768	Saimiri_boliviensis_boliviensis
ENSRNOG00000024278	Rbm42	99	87.500	ENSSARG00000010724	RBM42	100	87.500	Sorex_araneus
ENSRNOG00000024278	Rbm42	99	96.875	ENSSSCG00000002905	RBM42	100	96.875	Sus_scrofa
ENSRNOG00000024278	Rbm42	99	97.275	ENSUAMG00000020711	RBM42	100	97.275	Ursus_americanus
ENSRNOG00000024278	Rbm42	99	97.275	ENSUMAG00000020223	RBM42	100	97.275	Ursus_maritimus
ENSRNOG00000024278	Rbm42	99	97.321	ENSVVUG00000015117	RBM42	100	97.321	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	IEA	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component