EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000024737 (Gene tree)
Gene ID: 308971
Gene Symbol: Tnrc6a
Alias: LOC308971|Tnrc6
Full Name: trinucleotide repeat containing 6a
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 69965 bases
Position: chr1:193076430-193146394
Accession: 1307268
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000017885	Ago_hook	PF10427.9	8.5e-17	1	1
ENSRNOP00000071070	Ago_hook	PF10427.9	9.2e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000017885	-	6201	XM_006230190	ENSRNOP00000017885	1915 (aa)	XP_008757970	F1M9Y8
ENSRNOT00000086492	-	7937	XM_008759747	ENSRNOP00000071070	1954 (aa)	XP_008757969	A0A0G2JZJ3

Gene Model

Click here to download ENSRNOG00000024737's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000024737's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000024737	Tnrc6a	84	42.565	ENSRNOG00000022395	Tnrc6c	98	43.169
ENSRNOG00000024737	Tnrc6a	97	36.055	ENSRNOG00000024907	Tnrc6b	98	37.519

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000024737	Tnrc6a	100	94.314	ENSG00000090905	TNRC6A	100	95.000	Homo_sapiens
ENSRNOG00000024737	Tnrc6a	98	93.257	ENSAMEG00000009333	TNRC6A	99	93.250	Ailuropoda_melanoleuca
ENSRNOG00000024737	Tnrc6a	97	80.073	ENSAPLG00000009978	TNRC6A	99	80.230	Anas_platyrhynchos
ENSRNOG00000024737	Tnrc6a	100	52.654	ENSACAG00000011857	TNRC6A	100	54.572	Anolis_carolinensis
ENSRNOG00000024737	Tnrc6a	100	93.792	ENSANAG00000025252	TNRC6A	100	93.845	Aotus_nancymaae
ENSRNOG00000024737	Tnrc6a	90	57.095	ENSAMXG00000019919	tnrc6a	100	57.770	Astyanax_mexicanus
ENSRNOG00000024737	Tnrc6a	100	92.227	ENSBTAG00000017999	TNRC6A	100	91.810	Bos_taurus
ENSRNOG00000024737	Tnrc6a	100	92.581	ENSCJAG00000020677	TNRC6A	100	92.942	Callithrix_jacchus
ENSRNOG00000024737	Tnrc6a	98	92.887	ENSCAFG00000017531	TNRC6A	99	92.937	Canis_familiaris
ENSRNOG00000024737	Tnrc6a	98	91.202	ENSCAFG00020021160	TNRC6A	99	91.689	Canis_lupus_dingo
ENSRNOG00000024737	Tnrc6a	100	92.280	ENSCHIG00000019448	TNRC6A	100	92.666	Capra_hircus
ENSRNOG00000024737	Tnrc6a	100	93.532	ENSTSYG00000012711	TNRC6A	100	93.479	Carlito_syrichta
ENSRNOG00000024737	Tnrc6a	99	93.211	ENSCPOG00000036684	TNRC6A	100	93.316	Cavia_porcellus
ENSRNOG00000024737	Tnrc6a	100	93.949	ENSCCAG00000033664	TNRC6A	100	94.053	Cebus_capucinus
ENSRNOG00000024737	Tnrc6a	99	94.013	ENSCATG00000019284	TNRC6A	99	94.275	Cercocebus_atys
ENSRNOG00000024737	Tnrc6a	100	88.785	ENSCLAG00000010217	TNRC6A	100	88.941	Chinchilla_lanigera
ENSRNOG00000024737	Tnrc6a	98	93.933	ENSCSAG00000006561	TNRC6A	100	91.811	Chlorocebus_sabaeus
ENSRNOG00000024737	Tnrc6a	93	88.866	ENSCHOG00000009374	TNRC6A	95	85.986	Choloepus_hoffmanni
ENSRNOG00000024737	Tnrc6a	90	81.062	ENSCPBG00000001881	TNRC6A	99	81.120	Chrysemys_picta_bellii
ENSRNOG00000024737	Tnrc6a	100	94.053	ENSCANG00000041549	TNRC6A	100	94.001	Colobus_angolensis_palliatus
ENSRNOG00000024737	Tnrc6a	100	96.190	ENSCGRG00001015021	Tnrc6a	100	96.190	Cricetulus_griseus_chok1gshd
ENSRNOG00000024737	Tnrc6a	99	95.402	ENSCGRG00000013351	Tnrc6a	99	95.402	Cricetulus_griseus_crigri
ENSRNOG00000024737	Tnrc6a	90	56.999	ENSDARG00000079688	tnrc6a	99	57.367	Danio_rerio
ENSRNOG00000024737	Tnrc6a	98	90.710	ENSDNOG00000013989	TNRC6A	99	90.757	Dasypus_novemcinctus
ENSRNOG00000024737	Tnrc6a	98	83.525	ENSETEG00000014658	TNRC6A	99	83.359	Echinops_telfairi
ENSRNOG00000024737	Tnrc6a	100	92.857	ENSEASG00005017693	TNRC6A	100	92.909	Equus_asinus_asinus
ENSRNOG00000024737	Tnrc6a	100	90.951	ENSECAG00000025056	TNRC6A	99	92.835	Equus_caballus
ENSRNOG00000024737	Tnrc6a	98	86.932	ENSEEUG00000004530	TNRC6A	99	87.134	Erinaceus_europaeus
ENSRNOG00000024737	Tnrc6a	100	91.914	ENSFCAG00000025236	TNRC6A	100	92.123	Felis_catus
ENSRNOG00000024737	Tnrc6a	98	77.543	ENSFALG00000003757	TNRC6A	97	78.373	Ficedula_albicollis
ENSRNOG00000024737	Tnrc6a	90	80.634	ENSGALG00000006068	TNRC6A	99	81.326	Gallus_gallus
ENSRNOG00000024737	Tnrc6a	90	80.161	ENSGAGG00000023209	TNRC6A	99	80.506	Gopherus_agassizii
ENSRNOG00000024737	Tnrc6a	99	94.105	ENSGGOG00000005137	TNRC6A	99	94.105	Gorilla_gorilla
ENSRNOG00000024737	Tnrc6a	99	91.156	ENSHGLG00000012474	-	100	91.366	Heterocephalus_glaber_female
ENSRNOG00000024737	Tnrc6a	94	70.945	ENSHGLG00000007368	-	92	70.984	Heterocephalus_glaber_female
ENSRNOG00000024737	Tnrc6a	99	90.633	ENSHGLG00100012496	-	100	90.738	Heterocephalus_glaber_male
ENSRNOG00000024737	Tnrc6a	98	93.564	ENSSTOG00000023394	TNRC6A	99	91.247	Ictidomys_tridecemlineatus
ENSRNOG00000024737	Tnrc6a	97	68.527	ENSLACG00000006277	TNRC6A	99	69.044	Latimeria_chalumnae
ENSRNOG00000024737	Tnrc6a	99	83.408	ENSLOCG00000005517	tnrc6a	93	82.781	Lepisosteus_oculatus
ENSRNOG00000024737	Tnrc6a	98	92.197	ENSLAFG00000004209	TNRC6A	99	92.086	Loxodonta_africana
ENSRNOG00000024737	Tnrc6a	97	92.906	ENSMFAG00000003824	TNRC6A	99	93.163	Macaca_fascicularis
ENSRNOG00000024737	Tnrc6a	100	93.897	ENSMMUG00000020428	TNRC6A	100	94.105	Macaca_mulatta
ENSRNOG00000024737	Tnrc6a	100	94.115	ENSMNEG00000034854	TNRC6A	100	94.271	Macaca_nemestrina
ENSRNOG00000024737	Tnrc6a	97	92.248	ENSMLEG00000042737	TNRC6A	97	92.244	Mandrillus_leucophaeus
ENSRNOG00000024737	Tnrc6a	98	78.609	ENSMGAG00000006455	TNRC6A	99	76.577	Meleagris_gallopavo
ENSRNOG00000024737	Tnrc6a	100	95.981	ENSMAUG00000012750	Tnrc6a	100	95.981	Mesocricetus_auratus
ENSRNOG00000024737	Tnrc6a	100	94.836	ENSMICG00000030685	TNRC6A	100	94.836	Microcebus_murinus
ENSRNOG00000024737	Tnrc6a	100	96.240	ENSMOCG00000000152	Tnrc6a	100	96.240	Microtus_ochrogaster
ENSRNOG00000024737	Tnrc6a	98	80.133	ENSMODG00000016348	TNRC6A	99	77.772	Monodelphis_domestica
ENSRNOG00000024737	Tnrc6a	99	96.575	MGP_CAROLIEiJ_G0030425	Tnrc6a	99	97.775	Mus_caroli
ENSRNOG00000024737	Tnrc6a	100	97.285	ENSMUSG00000052707	Tnrc6a	100	97.285	Mus_musculus
ENSRNOG00000024737	Tnrc6a	99	97.314	MGP_PahariEiJ_G0013635	Tnrc6a	99	98.277	Mus_pahari
ENSRNOG00000024737	Tnrc6a	99	97.254	MGP_SPRETEiJ_G0031539	Tnrc6a	99	98.205	Mus_spretus
ENSRNOG00000024737	Tnrc6a	97	82.066	ENSMPUG00000012324	TNRC6A	100	81.799	Mustela_putorius_furo
ENSRNOG00000024737	Tnrc6a	97	90.346	ENSMLUG00000002701	TNRC6A	99	90.289	Myotis_lucifugus
ENSRNOG00000024737	Tnrc6a	99	94.311	ENSNGAG00000020702	Tnrc6a	100	94.050	Nannospalax_galili
ENSRNOG00000024737	Tnrc6a	97	91.908	ENSNLEG00000011851	TNRC6A	98	92.283	Nomascus_leucogenys
ENSRNOG00000024737	Tnrc6a	75	88.281	ENSMEUG00000015959	-	74	88.281	Notamacropus_eugenii
ENSRNOG00000024737	Tnrc6a	96	99.627	ENSOPRG00000005819	TNRC6A	96	99.627	Ochotona_princeps
ENSRNOG00000024737	Tnrc6a	99	87.151	ENSODEG00000012802	TNRC6A	99	87.092	Octodon_degus
ENSRNOG00000024737	Tnrc6a	87	81.580	ENSOANG00000007672	TNRC6A	99	81.580	Ornithorhynchus_anatinus
ENSRNOG00000024737	Tnrc6a	97	90.351	ENSOCUG00000004325	TNRC6A	99	90.451	Oryctolagus_cuniculus
ENSRNOG00000024737	Tnrc6a	98	93.521	ENSOGAG00000006666	TNRC6A	98	93.466	Otolemur_garnettii
ENSRNOG00000024737	Tnrc6a	98	91.406	ENSOARG00000017950	TNRC6A	98	92.899	Ovis_aries
ENSRNOG00000024737	Tnrc6a	99	94.158	ENSPPAG00000028379	TNRC6A	100	94.366	Pan_paniscus
ENSRNOG00000024737	Tnrc6a	100	92.019	ENSPPRG00000005861	TNRC6A	100	92.227	Panthera_pardus
ENSRNOG00000024737	Tnrc6a	99	91.488	ENSPTIG00000006346	TNRC6A	99	91.593	Panthera_tigris_altaica
ENSRNOG00000024737	Tnrc6a	98	93.681	ENSPTRG00000007898	TNRC6A	99	94.047	Pan_troglodytes
ENSRNOG00000024737	Tnrc6a	100	92.019	ENSPANG00000018523	TNRC6A	100	92.227	Papio_anubis
ENSRNOG00000024737	Tnrc6a	87	76.531	ENSPKIG00000012859	tnrc6a	99	76.531	Paramormyrops_kingsleyae
ENSRNOG00000024737	Tnrc6a	76	78.026	ENSPSIG00000003965	TNRC6A	99	78.093	Pelodiscus_sinensis
ENSRNOG00000024737	Tnrc6a	100	95.718	ENSPEMG00000016318	Tnrc6a	100	96.132	Peromyscus_maniculatus_bairdii
ENSRNOG00000024737	Tnrc6a	98	81.695	ENSPCIG00000012106	TNRC6A	100	80.955	Phascolarctos_cinereus
ENSRNOG00000024737	Tnrc6a	98	93.619	ENSPPYG00000007202	TNRC6A	100	91.446	Pongo_abelii
ENSRNOG00000024737	Tnrc6a	95	100.000	ENSPCAG00000008260	TNRC6A	94	100.000	Procavia_capensis
ENSRNOG00000024737	Tnrc6a	100	92.540	ENSPCOG00000010134	TNRC6A	100	92.488	Propithecus_coquereli
ENSRNOG00000024737	Tnrc6a	88	70.336	ENSPVAG00000012066	TNRC6A	97	70.533	Pteropus_vampyrus
ENSRNOG00000024737	Tnrc6a	98	93.881	ENSRBIG00000014222	TNRC6A	99	93.847	Rhinopithecus_bieti
ENSRNOG00000024737	Tnrc6a	98	93.724	ENSRROG00000032360	TNRC6A	100	91.455	Rhinopithecus_roxellana
ENSRNOG00000024737	Tnrc6a	98	92.682	ENSSBOG00000036197	TNRC6A	99	94.953	Saimiri_boliviensis_boliviensis
ENSRNOG00000024737	Tnrc6a	90	82.051	ENSSHAG00000008811	TNRC6A	99	82.507	Sarcophilus_harrisii
ENSRNOG00000024737	Tnrc6a	87	67.927	ENSSFOG00015008920	tnrc6a	99	69.044	Scleropages_formosus
ENSRNOG00000024737	Tnrc6a	72	81.884	ENSSARG00000002479	TNRC6A	89	82.971	Sorex_araneus
ENSRNOG00000024737	Tnrc6a	90	77.459	ENSSPUG00000010525	TNRC6A	100	77.477	Sphenodon_punctatus
ENSRNOG00000024737	Tnrc6a	100	93.427	ENSSSCG00000038870	TNRC6A	100	94.822	Sus_scrofa
ENSRNOG00000024737	Tnrc6a	99	77.985	ENSTGUG00000006142	TNRC6A	100	78.816	Taeniopygia_guttata
ENSRNOG00000024737	Tnrc6a	98	91.688	ENSTBEG00000014965	TNRC6A	99	91.680	Tupaia_belangeri
ENSRNOG00000024737	Tnrc6a	91	95.761	ENSTTRG00000002008	TNRC6A	90	95.761	Tursiops_truncatus
ENSRNOG00000024737	Tnrc6a	79	91.860	ENSUAMG00000006656	-	93	91.727	Ursus_americanus
ENSRNOG00000024737	Tnrc6a	99	91.649	ENSUMAG00000008274	TNRC6A	100	94.762	Ursus_maritimus
ENSRNOG00000024737	Tnrc6a	56	83.832	ENSVPAG00000010764	-	57	83.832	Vicugna_pacos
ENSRNOG00000024737	Tnrc6a	93	100.000	ENSVVUG00000005380	TNRC6A	99	92.947	Vulpes_vulpes
ENSRNOG00000024737	Tnrc6a	94	65.089	ENSXETG00000030437	TNRC6A	99	65.335	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005829	cytosol	-	TAS	Component
GO:0008150	biological_process	-	ND	Process
GO:0009267	cellular response to starvation	-	IEA	Process
GO:0009267	cellular response to starvation	-	ISO	Process
GO:0016021	integral component of membrane	-	IEA	Component
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035068	micro-ribonucleoprotein complex	-	ISO	Component
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035195	gene silencing by miRNA	-	ISO	Process
GO:0035278	miRNA mediated inhibition of translation	-	IEA	Process
GO:0035278	miRNA mediated inhibition of translation	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process