EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000024907 (Gene tree)
Gene ID: 192178
Gene Symbol: Tnrc6b
Alias: Cbl27
Full Name: trinucleotide repeat containing 6B
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 217320 bases
Position: chr7:121930615-122147934
Accession: 621428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073908	Ago_hook	PF10427.9	5.1e-20	1	1
ENSRNOP00000036077	Ago_hook	PF10427.9	6.9e-20	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000033975	-	17543	XM_006242061	ENSRNOP00000036077	1818 (aa)	XP_006242123	F1LV37
ENSRNOT00000091270	-	5884	-	ENSRNOP00000073908	1783 (aa)	-	A0A0G2K6R0

Gene Model

Click here to download ENSRNOG00000024907's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000024907's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000024907	Tnrc6b	81	35.373	ENSRNOG00000022395	Tnrc6c	93	35.914
ENSRNOG00000024907	Tnrc6b	98	37.519	ENSRNOG00000024737	Tnrc6a	97	36.055

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000024907	Tnrc6b	97	91.845	ENSG00000100354	TNRC6B	100	94.866	Homo_sapiens
ENSRNOG00000024907	Tnrc6b	99	89.785	ENSAMEG00000011025	TNRC6B	100	89.426	Ailuropoda_melanoleuca
ENSRNOG00000024907	Tnrc6b	96	83.948	ENSAPLG00000009347	TNRC6B	100	84.345	Anas_platyrhynchos
ENSRNOG00000024907	Tnrc6b	97	72.051	ENSACAG00000007281	TNRC6B	99	72.890	Anolis_carolinensis
ENSRNOG00000024907	Tnrc6b	97	93.266	ENSANAG00000035042	TNRC6B	100	94.516	Aotus_nancymaae
ENSRNOG00000024907	Tnrc6b	51	47.493	ENSAMXG00000008707	tnrc6b	97	44.384	Astyanax_mexicanus
ENSRNOG00000024907	Tnrc6b	98	93.345	ENSBTAG00000021076	TNRC6B	99	93.645	Bos_taurus
ENSRNOG00000024907	Tnrc6b	96	94.403	ENSCJAG00000002732	TNRC6B	99	98.028	Callithrix_jacchus
ENSRNOG00000024907	Tnrc6b	98	94.198	ENSCAFG00000001255	TNRC6B	99	91.507	Canis_familiaris
ENSRNOG00000024907	Tnrc6b	99	94.023	ENSCAFG00020002189	TNRC6B	99	94.173	Canis_lupus_dingo
ENSRNOG00000024907	Tnrc6b	99	93.459	ENSCHIG00000003491	TNRC6B	100	94.013	Capra_hircus
ENSRNOG00000024907	Tnrc6b	97	93.457	ENSTSYG00000011836	TNRC6B	100	94.049	Carlito_syrichta
ENSRNOG00000024907	Tnrc6b	100	94.673	ENSCPOG00000005705	TNRC6B	100	94.893	Cavia_porcellus
ENSRNOG00000024907	Tnrc6b	96	93.444	ENSCCAG00000019912	TNRC6B	100	91.748	Cebus_capucinus
ENSRNOG00000024907	Tnrc6b	96	94.635	ENSCATG00000029291	TNRC6B	99	94.806	Cercocebus_atys
ENSRNOG00000024907	Tnrc6b	100	94.289	ENSCLAG00000016942	TNRC6B	100	94.454	Chinchilla_lanigera
ENSRNOG00000024907	Tnrc6b	97	90.894	ENSCSAG00000006021	TNRC6B	99	91.062	Chlorocebus_sabaeus
ENSRNOG00000024907	Tnrc6b	91	83.817	ENSCPBG00000022932	TNRC6B	99	83.936	Chrysemys_picta_bellii
ENSRNOG00000024907	Tnrc6b	96	94.406	ENSCANG00000030776	TNRC6B	100	94.172	Colobus_angolensis_palliatus
ENSRNOG00000024907	Tnrc6b	99	96.366	ENSCGRG00001020166	Tnrc6b	100	96.366	Cricetulus_griseus_chok1gshd
ENSRNOG00000024907	Tnrc6b	100	96.813	ENSCGRG00000016696	Tnrc6b	99	96.859	Cricetulus_griseus_crigri
ENSRNOG00000024907	Tnrc6b	100	92.720	ENSDNOG00000012744	TNRC6B	100	92.909	Dasypus_novemcinctus
ENSRNOG00000024907	Tnrc6b	100	95.167	ENSDORG00000003386	Tnrc6b	100	95.222	Dipodomys_ordii
ENSRNOG00000024907	Tnrc6b	97	82.677	ENSETEG00000006570	TNRC6B	99	83.296	Echinops_telfairi
ENSRNOG00000024907	Tnrc6b	99	94.553	ENSEASG00005005306	TNRC6B	99	94.506	Equus_asinus_asinus
ENSRNOG00000024907	Tnrc6b	100	94.630	ENSECAG00000009759	TNRC6B	99	97.000	Equus_caballus
ENSRNOG00000024907	Tnrc6b	56	96.460	ENSEEUG00000008690	-	59	95.604	Erinaceus_europaeus
ENSRNOG00000024907	Tnrc6b	100	94.630	ENSFCAG00000004791	TNRC6B	100	94.575	Felis_catus
ENSRNOG00000024907	Tnrc6b	93	86.643	ENSFALG00000012195	TNRC6B	100	86.995	Ficedula_albicollis
ENSRNOG00000024907	Tnrc6b	100	94.563	ENSFDAG00000021368	TNRC6B	100	94.838	Fukomys_damarensis
ENSRNOG00000024907	Tnrc6b	98	86.693	ENSGALG00000012050	TNRC6B	97	87.423	Gallus_gallus
ENSRNOG00000024907	Tnrc6b	98	86.082	ENSGAGG00000025188	TNRC6B	98	86.338	Gopherus_agassizii
ENSRNOG00000024907	Tnrc6b	97	94.054	ENSGGOG00000008444	TNRC6B	100	94.632	Gorilla_gorilla
ENSRNOG00000024907	Tnrc6b	100	95.055	ENSHGLG00000009306	TNRC6B	100	95.275	Heterocephalus_glaber_female
ENSRNOG00000024907	Tnrc6b	100	94.560	ENSHGLG00100018108	TNRC6B	100	94.780	Heterocephalus_glaber_male
ENSRNOG00000024907	Tnrc6b	79	44.081	ENSIPUG00000001515	tnrc6b	80	46.160	Ictalurus_punctatus
ENSRNOG00000024907	Tnrc6b	100	95.003	ENSSTOG00000008927	TNRC6B	100	94.948	Ictidomys_tridecemlineatus
ENSRNOG00000024907	Tnrc6b	100	94.939	ENSJJAG00000015779	Tnrc6b	100	94.829	Jaculus_jaculus
ENSRNOG00000024907	Tnrc6b	98	60.763	ENSLACG00000000628	-	99	61.501	Latimeria_chalumnae
ENSRNOG00000024907	Tnrc6b	76	92.929	ENSLAFG00000014473	TNRC6B	99	93.290	Loxodonta_africana
ENSRNOG00000024907	Tnrc6b	96	94.908	ENSMFAG00000003862	TNRC6B	99	94.920	Macaca_fascicularis
ENSRNOG00000024907	Tnrc6b	100	94.797	ENSMMUG00000021345	TNRC6B	100	94.406	Macaca_mulatta
ENSRNOG00000024907	Tnrc6b	97	94.725	ENSMNEG00000042745	TNRC6B	99	94.895	Macaca_nemestrina
ENSRNOG00000024907	Tnrc6b	96	94.749	ENSMLEG00000041780	TNRC6B	100	94.406	Mandrillus_leucophaeus
ENSRNOG00000024907	Tnrc6b	98	83.703	ENSMGAG00000012333	TNRC6B	99	82.174	Meleagris_gallopavo
ENSRNOG00000024907	Tnrc6b	100	95.879	ENSMAUG00000016123	Tnrc6b	100	95.879	Mesocricetus_auratus
ENSRNOG00000024907	Tnrc6b	99	92.130	ENSMICG00000014056	TNRC6B	100	93.590	Microcebus_murinus
ENSRNOG00000024907	Tnrc6b	97	98.500	ENSMOCG00000020334	Tnrc6b	100	98.500	Microtus_ochrogaster
ENSRNOG00000024907	Tnrc6b	100	97.968	MGP_CAROLIEiJ_G0020043	Tnrc6b	100	97.968	Mus_caroli
ENSRNOG00000024907	Tnrc6b	100	98.023	ENSMUSG00000047888	Tnrc6b	100	98.023	Mus_musculus
ENSRNOG00000024907	Tnrc6b	100	97.802	MGP_PahariEiJ_G0020045	Tnrc6b	100	97.802	Mus_pahari
ENSRNOG00000024907	Tnrc6b	100	98.243	MGP_SPRETEiJ_G0020941	Tnrc6b	100	98.243	Mus_spretus
ENSRNOG00000024907	Tnrc6b	95	95.140	ENSMPUG00000016442	TNRC6B	93	94.292	Mustela_putorius_furo
ENSRNOG00000024907	Tnrc6b	97	89.574	ENSMLUG00000008765	TNRC6B	99	89.373	Myotis_lucifugus
ENSRNOG00000024907	Tnrc6b	100	95.332	ENSNGAG00000021294	Tnrc6b	100	95.442	Nannospalax_galili
ENSRNOG00000024907	Tnrc6b	86	92.714	ENSNLEG00000015311	TNRC6B	100	94.866	Nomascus_leucogenys
ENSRNOG00000024907	Tnrc6b	91	84.161	ENSOPRG00000012054	TNRC6B	88	91.703	Ochotona_princeps
ENSRNOG00000024907	Tnrc6b	100	94.893	ENSODEG00000013146	TNRC6B	100	95.058	Octodon_degus
ENSRNOG00000024907	Tnrc6b	100	93.644	ENSOCUG00000016128	TNRC6B	100	93.589	Oryctolagus_cuniculus
ENSRNOG00000024907	Tnrc6b	97	90.087	ENSOGAG00000011096	TNRC6B	99	89.614	Otolemur_garnettii
ENSRNOG00000024907	Tnrc6b	100	93.982	ENSOARG00000017238	TNRC6B	100	94.201	Ovis_aries
ENSRNOG00000024907	Tnrc6b	96	95.020	ENSPPAG00000028514	TNRC6B	100	94.860	Pan_paniscus
ENSRNOG00000024907	Tnrc6b	97	91.226	ENSPPRG00000017741	TNRC6B	100	94.179	Panthera_pardus
ENSRNOG00000024907	Tnrc6b	97	86.427	ENSPTIG00000022064	TNRC6B	98	88.064	Panthera_tigris_altaica
ENSRNOG00000024907	Tnrc6b	96	94.265	ENSPTRG00000047826	TNRC6B	100	94.632	Pan_troglodytes
ENSRNOG00000024907	Tnrc6b	96	86.122	ENSPANG00000009271	TNRC6B	96	96.531	Papio_anubis
ENSRNOG00000024907	Tnrc6b	97	86.218	ENSPSIG00000005318	TNRC6B	99	86.275	Pelodiscus_sinensis
ENSRNOG00000024907	Tnrc6b	100	96.870	ENSPEMG00000011403	Tnrc6b	100	96.870	Peromyscus_maniculatus_bairdii
ENSRNOG00000024907	Tnrc6b	97	85.302	ENSPCIG00000020347	TNRC6B	99	85.642	Phascolarctos_cinereus
ENSRNOG00000024907	Tnrc6b	50	45.005	ENSPFOG00000006033	-	95	41.814	Poecilia_formosa
ENSRNOG00000024907	Tnrc6b	58	60.390	ENSPMEG00000006371	-	85	60.390	Poecilia_mexicana
ENSRNOG00000024907	Tnrc6b	97	91.620	ENSPPYG00000011849	TNRC6B	99	91.845	Pongo_abelii
ENSRNOG00000024907	Tnrc6b	78	87.156	ENSPCAG00000008739	TNRC6B	77	87.800	Procavia_capensis
ENSRNOG00000024907	Tnrc6b	99	92.750	ENSPCOG00000020790	TNRC6B	100	94.056	Propithecus_coquereli
ENSRNOG00000024907	Tnrc6b	93	93.537	ENSPVAG00000004975	TNRC6B	94	93.537	Pteropus_vampyrus
ENSRNOG00000024907	Tnrc6b	95	94.438	ENSRBIG00000035576	TNRC6B	99	94.289	Rhinopithecus_bieti
ENSRNOG00000024907	Tnrc6b	97	94.498	ENSRROG00000031135	TNRC6B	100	94.289	Rhinopithecus_roxellana
ENSRNOG00000024907	Tnrc6b	97	91.492	ENSSBOG00000029743	TNRC6B	99	91.719	Saimiri_boliviensis_boliviensis
ENSRNOG00000024907	Tnrc6b	97	80.901	ENSSHAG00000009692	TNRC6B	99	79.903	Sarcophilus_harrisii
ENSRNOG00000024907	Tnrc6b	64	84.746	ENSSARG00000007971	-	70	84.746	Sorex_araneus
ENSRNOG00000024907	Tnrc6b	100	94.134	ENSSSCG00000000078	TNRC6B	99	94.316	Sus_scrofa
ENSRNOG00000024907	Tnrc6b	93	83.143	ENSTGUG00000010138	-	99	83.443	Taeniopygia_guttata
ENSRNOG00000024907	Tnrc6b	100	88.329	ENSTTRG00000011465	TNRC6B	100	88.603	Tursiops_truncatus
ENSRNOG00000024907	Tnrc6b	100	92.641	ENSUAMG00000007174	TNRC6B	99	93.063	Ursus_americanus
ENSRNOG00000024907	Tnrc6b	97	94.098	ENSUMAG00000014336	TNRC6B	100	93.834	Ursus_maritimus
ENSRNOG00000024907	Tnrc6b	70	88.687	ENSVPAG00000001467	TNRC6B	75	87.475	Vicugna_pacos
ENSRNOG00000024907	Tnrc6b	100	94.137	ENSVVUG00000007064	TNRC6B	100	94.343	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0008150	biological_process	-	ND	Process
GO:0031047	gene silencing by RNA	-	ISO	Process
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035278	miRNA mediated inhibition of translation	-	IEA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	-	ISO	Process