EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000025338 (Gene tree)
Gene ID: 360596
Gene Symbol: Msi2
Alias: LOC360596|RGD1560397
Full Name: musashi RNA-binding protein 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 358572 bases
Position: chr10:75681393-76039964
Accession: 1560397
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000003164	RRM_1	PF00076.22	1.8e-22	1	2
ENSRNOP00000003164	RRM_1	PF00076.22	1.8e-22	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000003164	-	984	XM_008768240	ENSRNOP00000003164	278 (aa)	-	F1LWE6

Gene Model

Click here to download ENSRNOG00000025338's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000025338's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000025338	Msi2	52	38.462	ENSRNOG00000011100	AABR07040947.1	84	35.294
ENSRNOG00000025338	Msi2	50	32.558	ENSRNOG00000012455	Tardbp	52	32.558
ENSRNOG00000025338	Msi2	52	41.538	ENSRNOG00000049527	AC109707.1	63	41.538
ENSRNOG00000025338	Msi2	54	46.939	ENSRNOG00000051748	AABR07060628.1	87	46.939
ENSRNOG00000025338	Msi2	53	40.940	ENSRNOG00000038905	AABR07048397.1	55	39.877
ENSRNOG00000025338	Msi2	50	48.201	ENSRNOG00000046272	Hnrnpab	64	46.795
ENSRNOG00000025338	Msi2	51	48.921	ENSRNOG00000002270	Hnrnpdl	74	40.000
ENSRNOG00000025338	Msi2	52	40.698	ENSRNOG00000011175	Hnrnpa2b1	57	40.230
ENSRNOG00000025338	Msi2	53	40.940	ENSRNOG00000027006	LOC100911361	55	39.877
ENSRNOG00000025338	Msi2	52	41.958	ENSRNOG00000052968	Hnrnpa3	51	41.935
ENSRNOG00000025338	Msi2	53	45.161	ENSRNOG00000002292	Hnrnpd	68	42.169
ENSRNOG00000025338	Msi2	100	70.740	ENSRNOG00000001156	Msi1	100	69.132
ENSRNOG00000025338	Msi2	50	48.201	ENSRNOG00000003645	LOC103689931	64	46.795
ENSRNOG00000025338	Msi2	55	41.135	ENSRNOG00000039876	LOC681410	60	40.132
ENSRNOG00000025338	Msi2	52	41.958	ENSRNOG00000036839	Hnrnpa1	62	40.523

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000025338	Msi2	100	100.000	ENSG00000153944	MSI2	94	100.000	Homo_sapiens
ENSRNOG00000025338	Msi2	100	92.806	ENSAPOG00000001658	msi2a	93	92.806	Acanthochromis_polyacanthus
ENSRNOG00000025338	Msi2	100	93.919	ENSAMEG00000002697	MSI2	99	93.919	Ailuropoda_melanoleuca
ENSRNOG00000025338	Msi2	100	68.421	ENSACIG00000009475	msi2a	94	68.713	Amphilophus_citrinellus
ENSRNOG00000025338	Msi2	50	84.000	ENSAOCG00000014822	msi2a	58	84.000	Amphiprion_ocellaris
ENSRNOG00000025338	Msi2	100	92.806	ENSAPEG00000007706	msi2a	93	92.806	Amphiprion_percula
ENSRNOG00000025338	Msi2	100	93.165	ENSATEG00000003301	-	100	93.165	Anabas_testudineus
ENSRNOG00000025338	Msi2	100	92.806	ENSATEG00000010498	msi2a	93	92.806	Anabas_testudineus
ENSRNOG00000025338	Msi2	95	97.826	ENSACAG00000005452	MSI2	74	95.455	Anolis_carolinensis
ENSRNOG00000025338	Msi2	100	100.000	ENSANAG00000037827	MSI2	94	100.000	Aotus_nancymaae
ENSRNOG00000025338	Msi2	100	92.446	ENSACLG00000007752	msi2a	93	92.446	Astatotilapia_calliptera
ENSRNOG00000025338	Msi2	100	94.624	ENSAMXG00000032796	msi2a	94	92.473	Astyanax_mexicanus
ENSRNOG00000025338	Msi2	100	95.683	ENSAMXG00000010474	msi2b	97	95.683	Astyanax_mexicanus
ENSRNOG00000025338	Msi2	100	99.640	ENSBTAG00000004406	MSI2	97	99.640	Bos_taurus
ENSRNOG00000025338	Msi2	66	61.809	WBGene00003423	msi-1	71	61.809	Caenorhabditis_elegans
ENSRNOG00000025338	Msi2	100	100.000	ENSCJAG00000013998	MSI2	94	100.000	Callithrix_jacchus
ENSRNOG00000025338	Msi2	100	93.919	ENSCAFG00020025620	MSI2	81	93.919	Canis_lupus_dingo
ENSRNOG00000025338	Msi2	100	99.640	ENSCHIG00000016580	MSI2	94	99.640	Capra_hircus
ENSRNOG00000025338	Msi2	100	96.763	ENSCPOG00000034042	MSI2	98	96.763	Cavia_porcellus
ENSRNOG00000025338	Msi2	100	100.000	ENSCCAG00000033927	MSI2	94	100.000	Cebus_capucinus
ENSRNOG00000025338	Msi2	100	100.000	ENSCATG00000040879	MSI2	94	100.000	Cercocebus_atys
ENSRNOG00000025338	Msi2	100	93.919	ENSCLAG00000014325	MSI2	94	93.919	Chinchilla_lanigera
ENSRNOG00000025338	Msi2	100	100.000	ENSCSAG00000005633	MSI2	94	100.000	Chlorocebus_sabaeus
ENSRNOG00000025338	Msi2	95	68.302	ENSCHOG00000008660	MSI2	95	68.302	Choloepus_hoffmanni
ENSRNOG00000025338	Msi2	100	99.015	ENSCPBG00000009942	MSI2	95	91.760	Chrysemys_picta_bellii
ENSRNOG00000025338	Msi2	92	54.634	ENSCING00000018579	-	97	52.915	Ciona_intestinalis
ENSRNOG00000025338	Msi2	65	66.839	ENSCSAVG00000010397	-	71	65.500	Ciona_savignyi
ENSRNOG00000025338	Msi2	100	99.556	ENSCANG00000036414	MSI2	100	93.919	Colobus_angolensis_palliatus
ENSRNOG00000025338	Msi2	100	99.642	ENSCGRG00001013330	Msi2	94	99.642	Cricetulus_griseus_chok1gshd
ENSRNOG00000025338	Msi2	100	93.603	ENSCGRG00000003141	Msi2	100	93.603	Cricetulus_griseus_crigri
ENSRNOG00000025338	Msi2	50	67.910	ENSCSEG00000013549	msi2a	88	67.910	Cynoglossus_semilaevis
ENSRNOG00000025338	Msi2	90	75.258	ENSCSEG00000013557	msi2a	83	73.711	Cynoglossus_semilaevis
ENSRNOG00000025338	Msi2	100	83.094	ENSCSEG00000003266	-	91	83.094	Cynoglossus_semilaevis
ENSRNOG00000025338	Msi2	95	92.075	ENSCVAG00000017075	msi2a	92	92.424	Cyprinodon_variegatus
ENSRNOG00000025338	Msi2	91	94.488	ENSDARG00000032614	msi2b	100	98.020	Danio_rerio
ENSRNOG00000025338	Msi2	100	75.148	ENSDARG00000033901	msi2a	95	75.444	Danio_rerio
ENSRNOG00000025338	Msi2	100	100.000	ENSDNOG00000014501	MSI2	100	100.000	Dasypus_novemcinctus
ENSRNOG00000025338	Msi2	90	88.832	ENSDORG00000005394	Msi2	84	87.817	Dipodomys_ordii
ENSRNOG00000025338	Msi2	50	100.000	ENSDORG00000028440	-	100	100.000	Dipodomys_ordii
ENSRNOG00000025338	Msi2	100	55.975	FBgn0260943	Rbp6	88	68.750	Drosophila_melanogaster
ENSRNOG00000025338	Msi2	55	76.316	ENSETEG00000012450	-	64	76.316	Echinops_telfairi
ENSRNOG00000025338	Msi2	98	65.424	ENSEBUG00000006732	msi2a	86	63.729	Eptatretus_burgeri
ENSRNOG00000025338	Msi2	100	96.853	ENSEASG00005002965	MSI2	97	86.293	Equus_asinus_asinus
ENSRNOG00000025338	Msi2	100	98.696	ENSECAG00000011435	MSI2	87	98.696	Equus_caballus
ENSRNOG00000025338	Msi2	95	85.375	ENSEEUG00000007810	MSI2	100	85.375	Erinaceus_europaeus
ENSRNOG00000025338	Msi2	100	87.625	ENSELUG00000001361	msi2b	93	87.625	Esox_lucius
ENSRNOG00000025338	Msi2	100	94.245	ENSELUG00000011747	msi2a	93	94.245	Esox_lucius
ENSRNOG00000025338	Msi2	50	81.132	ENSFCAG00000033787	-	67	81.132	Felis_catus
ENSRNOG00000025338	Msi2	100	100.000	ENSFCAG00000041686	MSI2	94	100.000	Felis_catus
ENSRNOG00000025338	Msi2	100	93.919	ENSFDAG00000016118	MSI2	100	93.919	Fukomys_damarensis
ENSRNOG00000025338	Msi2	100	92.446	ENSFHEG00000000084	msi2a	93	92.446	Fundulus_heteroclitus
ENSRNOG00000025338	Msi2	100	92.230	ENSGALG00000005567	MSI2	94	92.230	Gallus_gallus
ENSRNOG00000025338	Msi2	95	83.333	ENSGAFG00000006974	msi2a	92	83.643	Gambusia_affinis
ENSRNOG00000025338	Msi2	100	99.065	ENSGAGG00000016542	MSI2	100	90.132	Gopherus_agassizii
ENSRNOG00000025338	Msi2	100	99.556	ENSGGOG00000013182	MSI2	100	93.919	Gorilla_gorilla
ENSRNOG00000025338	Msi2	100	92.446	ENSHBUG00000020800	msi2a	93	92.446	Haplochromis_burtoni
ENSRNOG00000025338	Msi2	100	83.446	ENSHGLG00000012444	MSI2	84	83.446	Heterocephalus_glaber_female
ENSRNOG00000025338	Msi2	50	100.000	ENSHGLG00100004028	-	87	100.000	Heterocephalus_glaber_male
ENSRNOG00000025338	Msi2	88	91.304	ENSHGLG00100003744	MSI2	100	91.304	Heterocephalus_glaber_male
ENSRNOG00000025338	Msi2	97	93.035	ENSHCOG00000000266	msi2a	91	83.681	Hippocampus_comes
ENSRNOG00000025338	Msi2	94	87.850	ENSHCOG00000017241	-	64	89.175	Hippocampus_comes
ENSRNOG00000025338	Msi2	100	94.245	ENSIPUG00000021097	msi2a	93	92.806	Ictalurus_punctatus
ENSRNOG00000025338	Msi2	100	91.367	ENSIPUG00000003732	msi2b	93	91.367	Ictalurus_punctatus
ENSRNOG00000025338	Msi2	100	96.763	ENSSTOG00000007884	MSI2	98	96.763	Ictidomys_tridecemlineatus
ENSRNOG00000025338	Msi2	88	85.930	ENSJJAG00000006292	-	100	85.427	Jaculus_jaculus
ENSRNOG00000025338	Msi2	50	100.000	ENSJJAG00000009467	-	100	100.000	Jaculus_jaculus
ENSRNOG00000025338	Msi2	95	91.321	ENSKMAG00000009494	msi2a	89	91.667	Kryptolebias_marmoratus
ENSRNOG00000025338	Msi2	100	92.806	ENSLBEG00000007061	msi2a	93	92.806	Labrus_bergylta
ENSRNOG00000025338	Msi2	100	64.516	ENSLBEG00000026223	-	100	64.516	Labrus_bergylta
ENSRNOG00000025338	Msi2	50	98.148	ENSLACG00000016798	MSI2	89	98.148	Latimeria_chalumnae
ENSRNOG00000025338	Msi2	100	77.745	ENSLOCG00000004675	msi2b	95	77.745	Lepisosteus_oculatus
ENSRNOG00000025338	Msi2	100	99.556	ENSMFAG00000003775	MSI2	100	93.919	Macaca_fascicularis
ENSRNOG00000025338	Msi2	100	99.556	ENSMMUG00000002069	MSI2	100	93.919	Macaca_mulatta
ENSRNOG00000025338	Msi2	100	100.000	ENSMNEG00000045275	MSI2	94	100.000	Macaca_nemestrina
ENSRNOG00000025338	Msi2	100	99.556	ENSMLEG00000033888	MSI2	100	93.919	Mandrillus_leucophaeus
ENSRNOG00000025338	Msi2	100	92.115	ENSMAMG00000010503	msi2a	93	90.323	Mastacembelus_armatus
ENSRNOG00000025338	Msi2	97	94.030	ENSMAMG00000002488	-	85	95.050	Mastacembelus_armatus
ENSRNOG00000025338	Msi2	100	92.446	ENSMZEG00005007676	msi2a	94	92.446	Maylandia_zebra
ENSRNOG00000025338	Msi2	100	93.603	ENSMAUG00000003862	Msi2	94	93.603	Mesocricetus_auratus
ENSRNOG00000025338	Msi2	100	100.000	ENSMICG00000013598	-	94	100.000	Microcebus_murinus
ENSRNOG00000025338	Msi2	100	75.618	ENSMICG00000032913	-	93	76.678	Microcebus_murinus
ENSRNOG00000025338	Msi2	100	93.919	ENSMOCG00000005820	Msi2	94	93.919	Microtus_ochrogaster
ENSRNOG00000025338	Msi2	95	83.774	ENSMMOG00000008348	msi2a	91	84.028	Mola_mola
ENSRNOG00000025338	Msi2	88	89.855	ENSMODG00000014790	MSI2	100	89.855	Monodelphis_domestica
ENSRNOG00000025338	Msi2	100	89.209	ENSMALG00000000071	msi2a	93	94.175	Monopterus_albus
ENSRNOG00000025338	Msi2	100	100.000	MGP_CAROLIEiJ_G0016948	Msi2	100	100.000	Mus_caroli
ENSRNOG00000025338	Msi2	100	100.000	ENSMUSG00000069769	Msi2	100	100.000	Mus_musculus
ENSRNOG00000025338	Msi2	100	100.000	MGP_PahariEiJ_G0018079	Msi2	100	100.000	Mus_pahari
ENSRNOG00000025338	Msi2	100	100.000	MGP_SPRETEiJ_G0017795	Msi2	100	100.000	Mus_spretus
ENSRNOG00000025338	Msi2	100	100.000	ENSMPUG00000015377	MSI2	97	100.000	Mustela_putorius_furo
ENSRNOG00000025338	Msi2	100	100.000	ENSMLUG00000007865	MSI2	97	100.000	Myotis_lucifugus
ENSRNOG00000025338	Msi2	100	93.919	ENSNGAG00000017807	Msi2	94	93.919	Nannospalax_galili
ENSRNOG00000025338	Msi2	100	92.446	ENSNBRG00000014596	msi2a	93	92.446	Neolamprologus_brichardi
ENSRNOG00000025338	Msi2	100	99.556	ENSNLEG00000008059	MSI2	95	98.969	Nomascus_leucogenys
ENSRNOG00000025338	Msi2	55	88.816	ENSOPRG00000000872	-	64	88.816	Ochotona_princeps
ENSRNOG00000025338	Msi2	100	93.919	ENSODEG00000011974	MSI2	94	93.919	Octodon_degus
ENSRNOG00000025338	Msi2	50	95.050	ENSONIG00000001972	msi2a	72	95.050	Oreochromis_niloticus
ENSRNOG00000025338	Msi2	94	98.969	ENSOANG00000005667	MSI2	70	98.969	Ornithorhynchus_anatinus
ENSRNOG00000025338	Msi2	100	100.000	ENSOCUG00000010440	MSI2	97	100.000	Oryctolagus_cuniculus
ENSRNOG00000025338	Msi2	100	92.806	ENSORLG00000009671	msi2a	94	92.806	Oryzias_latipes
ENSRNOG00000025338	Msi2	100	92.806	ENSORLG00020021556	msi2a	94	92.806	Oryzias_latipes_hni
ENSRNOG00000025338	Msi2	100	92.806	ENSORLG00015004592	msi2a	94	92.806	Oryzias_latipes_hsok
ENSRNOG00000025338	Msi2	100	92.806	ENSOMEG00000000146	msi2a	96	92.806	Oryzias_melastigma
ENSRNOG00000025338	Msi2	100	94.964	ENSOGAG00000005621	MSI2	99	94.964	Otolemur_garnettii
ENSRNOG00000025338	Msi2	100	93.919	ENSPPAG00000037697	MSI2	100	93.919	Pan_paniscus
ENSRNOG00000025338	Msi2	100	100.000	ENSPPRG00000001848	MSI2	94	100.000	Panthera_pardus
ENSRNOG00000025338	Msi2	100	93.919	ENSPTIG00000021678	MSI2	96	93.919	Panthera_tigris_altaica
ENSRNOG00000025338	Msi2	70	83.163	ENSPTIG00000021873	-	76	86.486	Panthera_tigris_altaica
ENSRNOG00000025338	Msi2	100	99.556	ENSPTRG00000009437	MSI2	100	93.919	Pan_troglodytes
ENSRNOG00000025338	Msi2	100	100.000	ENSPANG00000022319	MSI2	94	100.000	Papio_anubis
ENSRNOG00000025338	Msi2	95	90.189	ENSPKIG00000007038	-	97	79.553	Paramormyrops_kingsleyae
ENSRNOG00000025338	Msi2	100	99.065	ENSPSIG00000008618	MSI2	78	99.065	Pelodiscus_sinensis
ENSRNOG00000025338	Msi2	100	92.086	ENSPMGG00000005888	msi2a	93	92.086	Periophthalmus_magnuspinnatus
ENSRNOG00000025338	Msi2	50	100.000	ENSPEMG00000021793	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000025338	Msi2	100	92.568	ENSPCIG00000006063	MSI2	94	89.803	Phascolarctos_cinereus
ENSRNOG00000025338	Msi2	50	89.247	ENSPLAG00000000436	msi2a	64	90.217	Poecilia_latipinna
ENSRNOG00000025338	Msi2	50	89.247	ENSPMEG00000013247	msi2a	66	89.247	Poecilia_mexicana
ENSRNOG00000025338	Msi2	97	93.532	ENSPREG00000000881	msi2a	92	89.928	Poecilia_reticulata
ENSRNOG00000025338	Msi2	86	96.639	ENSPPYG00000008244	-	100	96.639	Pongo_abelii
ENSRNOG00000025338	Msi2	86	70.588	ENSPCAG00000010552	MSI2	100	70.588	Procavia_capensis
ENSRNOG00000025338	Msi2	50	100.000	ENSPCOG00000019195	-	93	100.000	Propithecus_coquereli
ENSRNOG00000025338	Msi2	100	90.288	ENSPVAG00000017053	MSI2	99	90.288	Pteropus_vampyrus
ENSRNOG00000025338	Msi2	100	92.446	ENSPNYG00000018393	msi2a	94	92.446	Pundamilia_nyererei
ENSRNOG00000025338	Msi2	100	94.982	ENSPNAG00000000844	msi2b	93	93.190	Pygocentrus_nattereri
ENSRNOG00000025338	Msi2	100	94.624	ENSPNAG00000014957	msi2a	94	92.832	Pygocentrus_nattereri
ENSRNOG00000025338	Msi2	50	100.000	ENSRROG00000034421	-	92	100.000	Rhinopithecus_roxellana
ENSRNOG00000025338	Msi2	100	100.000	ENSSBOG00000026425	MSI2	100	93.919	Saimiri_boliviensis_boliviensis
ENSRNOG00000025338	Msi2	100	92.568	ENSSHAG00000008672	MSI2	100	92.568	Sarcophilus_harrisii
ENSRNOG00000025338	Msi2	95	90.164	ENSSFOG00015012168	msi2b	63	90.164	Scleropages_formosus
ENSRNOG00000025338	Msi2	100	90.288	ENSSFOG00015021687	-	97	88.489	Scleropages_formosus
ENSRNOG00000025338	Msi2	100	92.806	ENSSMAG00000018484	msi2a	93	92.806	Scophthalmus_maximus
ENSRNOG00000025338	Msi2	100	92.806	ENSSDUG00000014507	msi2a	93	92.806	Seriola_dumerili
ENSRNOG00000025338	Msi2	100	87.153	ENSSDUG00000021968	-	86	94.059	Seriola_dumerili
ENSRNOG00000025338	Msi2	100	92.806	ENSSLDG00000017172	msi2a	93	92.806	Seriola_lalandi_dorsalis
ENSRNOG00000025338	Msi2	50	95.370	ENSSPUG00000000913	-	81	95.370	Sphenodon_punctatus
ENSRNOG00000025338	Msi2	97	93.532	ENSSPAG00000017793	msi2a	88	85.971	Stegastes_partitus
ENSRNOG00000025338	Msi2	100	100.000	ENSSSCG00000038505	MSI2	94	100.000	Sus_scrofa
ENSRNOG00000025338	Msi2	88	90.338	ENSTGUG00000008452	MSI2	100	90.338	Taeniopygia_guttata
ENSRNOG00000025338	Msi2	100	92.086	ENSTRUG00000021248	msi2a	88	92.086	Takifugu_rubripes
ENSRNOG00000025338	Msi2	69	84.896	ENSTBEG00000001241	MSI2	59	84.896	Tupaia_belangeri
ENSRNOG00000025338	Msi2	100	90.756	ENSTTRG00000002189	MSI2	100	90.756	Tursiops_truncatus
ENSRNOG00000025338	Msi2	100	100.000	ENSUAMG00000000700	MSI2	97	100.000	Ursus_americanus
ENSRNOG00000025338	Msi2	95	92.075	ENSUMAG00000000505	MSI2	95	92.075	Ursus_maritimus
ENSRNOG00000025338	Msi2	60	83.234	ENSVPAG00000006837	-	62	83.234	Vicugna_pacos
ENSRNOG00000025338	Msi2	100	100.000	ENSVVUG00000011783	MSI2	94	93.919	Vulpes_vulpes
ENSRNOG00000025338	Msi2	95	87.500	ENSXCOG00000006113	msi2a	83	87.500	Xiphophorus_couchianus
ENSRNOG00000025338	Msi2	97	93.532	ENSXMAG00000000608	msi2a	92	92.424	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0005844	polysome	-	ISO	Component
GO:0008266	poly(U) RNA binding	-	ISO	Function
GO:0048864	stem cell development	-	ISO	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component