EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000025360 (Gene tree)
Gene ID: 311334
Gene Symbol: Exd1
Alias: Exdl1|LOC311334|RGD1561009
Full Name: exonuclease 3'-5' domain containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 27940 bases
Position: chr3:111326480-111354419
Accession: 1561009
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000038378	DNA_pol_A_exo1	PF01612.20	3.4e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000038365	-	3435	XM_006234766	ENSRNOP00000038378	562 (aa)	XP_006234828	D4AD21

Gene Model

Click here to download ENSRNOG00000025360's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000025360's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000025360	Exd1	99	72.251	ENSG00000178997	EXD1	99	72.251	Homo_sapiens
ENSRNOG00000025360	Exd1	99	73.043	ENSAMEG00000016793	EXD1	99	73.043	Ailuropoda_melanoleuca
ENSRNOG00000025360	Exd1	71	46.766	ENSAOCG00000009355	-	71	46.766	Amphiprion_ocellaris
ENSRNOG00000025360	Exd1	59	49.398	ENSAPEG00000002194	-	85	49.398	Amphiprion_percula
ENSRNOG00000025360	Exd1	70	59.494	ENSACAG00000003676	EXD1	100	59.494	Anolis_carolinensis
ENSRNOG00000025360	Exd1	99	73.822	ENSANAG00000029058	EXD1	99	73.822	Aotus_nancymaae
ENSRNOG00000025360	Exd1	68	44.961	ENSACLG00000001361	-	69	44.961	Astatotilapia_calliptera
ENSRNOG00000025360	Exd1	69	43.188	ENSAMXG00000026016	-	73	43.188	Astyanax_mexicanus
ENSRNOG00000025360	Exd1	83	72.152	ENSBTAG00000008363	EXD1	99	72.574	Bos_taurus
ENSRNOG00000025360	Exd1	99	68.412	ENSCJAG00000020765	EXD1	99	68.412	Callithrix_jacchus
ENSRNOG00000025360	Exd1	99	71.204	ENSCAFG00000009510	EXD1	99	71.204	Canis_familiaris
ENSRNOG00000025360	Exd1	73	69.104	ENSCAFG00020005504	EXD1	99	69.104	Canis_lupus_dingo
ENSRNOG00000025360	Exd1	99	70.018	ENSCHIG00000019606	EXD1	99	70.370	Capra_hircus
ENSRNOG00000025360	Exd1	99	69.474	ENSCPOG00000010573	EXD1	99	69.474	Cavia_porcellus
ENSRNOG00000025360	Exd1	99	70.157	ENSCCAG00000016905	EXD1	99	70.157	Cebus_capucinus
ENSRNOG00000025360	Exd1	99	72.775	ENSCATG00000037400	EXD1	99	72.775	Cercocebus_atys
ENSRNOG00000025360	Exd1	88	55.253	ENSCSAG00000007647	EXD1	99	55.253	Chlorocebus_sabaeus
ENSRNOG00000025360	Exd1	88	66.075	ENSCHOG00000011441	EXD1	99	66.075	Choloepus_hoffmanni
ENSRNOG00000025360	Exd1	99	51.706	ENSCPBG00000013511	EXD1	93	51.877	Chrysemys_picta_bellii
ENSRNOG00000025360	Exd1	99	68.586	ENSCANG00000036848	EXD1	99	68.586	Colobus_angolensis_palliatus
ENSRNOG00000025360	Exd1	100	85.315	ENSCGRG00001011355	Exd1	97	85.315	Cricetulus_griseus_chok1gshd
ENSRNOG00000025360	Exd1	100	85.315	ENSCGRG00000011633	Exd1	100	85.315	Cricetulus_griseus_crigri
ENSRNOG00000025360	Exd1	68	43.750	ENSCSEG00000000904	-	68	43.750	Cynoglossus_semilaevis
ENSRNOG00000025360	Exd1	64	36.415	ENSDARG00000098669	exd1	85	42.366	Danio_rerio
ENSRNOG00000025360	Exd1	99	72.648	ENSDNOG00000011410	EXD1	99	72.648	Dasypus_novemcinctus
ENSRNOG00000025360	Exd1	91	74.142	ENSDORG00000012079	Exd1	99	74.142	Dipodomys_ordii
ENSRNOG00000025360	Exd1	69	68.333	ENSETEG00000014257	-	78	68.333	Echinops_telfairi
ENSRNOG00000025360	Exd1	99	71.454	ENSEASG00005016394	EXD1	99	71.278	Equus_asinus_asinus
ENSRNOG00000025360	Exd1	99	72.902	ENSECAG00000021250	EXD1	99	72.902	Equus_caballus
ENSRNOG00000025360	Exd1	87	64.729	ENSEEUG00000001232	EXD1	99	64.729	Erinaceus_europaeus
ENSRNOG00000025360	Exd1	69	44.560	ENSELUG00000006324	-	64	44.560	Esox_lucius
ENSRNOG00000025360	Exd1	99	73.951	ENSFCAG00000028533	EXD1	99	73.951	Felis_catus
ENSRNOG00000025360	Exd1	60	44.379	ENSGMOG00000015956	-	99	43.881	Gadus_morhua
ENSRNOG00000025360	Exd1	68	53.093	ENSGALG00000041449	EXD1	95	53.093	Gallus_gallus
ENSRNOG00000025360	Exd1	69	42.051	ENSGAFG00000017161	-	71	42.051	Gambusia_affinis
ENSRNOG00000025360	Exd1	99	50.856	ENSGAGG00000019200	EXD1	93	50.856	Gopherus_agassizii
ENSRNOG00000025360	Exd1	99	72.426	ENSGGOG00000004594	EXD1	99	72.426	Gorilla_gorilla
ENSRNOG00000025360	Exd1	99	70.228	ENSHGLG00000015369	EXD1	99	70.228	Heterocephalus_glaber_female
ENSRNOG00000025360	Exd1	99	69.352	ENSHGLG00100007398	EXD1	100	69.352	Heterocephalus_glaber_male
ENSRNOG00000025360	Exd1	99	76.532	ENSSTOG00000014980	EXD1	99	76.532	Ictidomys_tridecemlineatus
ENSRNOG00000025360	Exd1	68	45.833	ENSLBEG00000000022	-	66	45.833	Labrus_bergylta
ENSRNOG00000025360	Exd1	50	51.786	ENSLBEG00000010957	-	83	51.786	Labrus_bergylta
ENSRNOG00000025360	Exd1	69	52.792	ENSLACG00000006680	EXD1	66	52.792	Latimeria_chalumnae
ENSRNOG00000025360	Exd1	71	44.665	ENSLOCG00000012278	-	97	44.665	Lepisosteus_oculatus
ENSRNOG00000025360	Exd1	92	69.043	ENSLAFG00000014739	EXD1	99	69.043	Loxodonta_africana
ENSRNOG00000025360	Exd1	99	72.426	ENSMFAG00000034670	EXD1	99	72.426	Macaca_fascicularis
ENSRNOG00000025360	Exd1	99	72.251	ENSMMUG00000013991	EXD1	99	72.251	Macaca_mulatta
ENSRNOG00000025360	Exd1	99	72.600	ENSMNEG00000037333	EXD1	99	72.600	Macaca_nemestrina
ENSRNOG00000025360	Exd1	62	79.261	ENSMLEG00000033153	EXD1	97	84.912	Mandrillus_leucophaeus
ENSRNOG00000025360	Exd1	68	45.220	ENSMZEG00005009193	-	71	45.220	Maylandia_zebra
ENSRNOG00000025360	Exd1	69	51.899	ENSMGAG00000011179	EXD1	98	51.899	Meleagris_gallopavo
ENSRNOG00000025360	Exd1	100	84.035	ENSMAUG00000002698	Exd1	100	84.035	Mesocricetus_auratus
ENSRNOG00000025360	Exd1	99	75.261	ENSMICG00000014337	EXD1	99	75.261	Microcebus_murinus
ENSRNOG00000025360	Exd1	100	81.449	ENSMOCG00000018151	Exd1	100	81.449	Microtus_ochrogaster
ENSRNOG00000025360	Exd1	89	64.355	ENSMODG00000000164	EXD1	99	64.355	Monodelphis_domestica
ENSRNOG00000025360	Exd1	70	40.863	ENSMALG00000015814	-	87	40.394	Monopterus_albus
ENSRNOG00000025360	Exd1	100	87.368	MGP_CAROLIEiJ_G0024145	Exd1	100	87.368	Mus_caroli
ENSRNOG00000025360	Exd1	100	87.368	ENSMUSG00000048647	Exd1	100	87.368	Mus_musculus
ENSRNOG00000025360	Exd1	100	82.105	MGP_PahariEiJ_G0025588	Exd1	100	82.105	Mus_pahari
ENSRNOG00000025360	Exd1	100	87.544	MGP_SPRETEiJ_G0025061	Exd1	100	87.544	Mus_spretus
ENSRNOG00000025360	Exd1	99	74.520	ENSMPUG00000008811	EXD1	99	74.520	Mustela_putorius_furo
ENSRNOG00000025360	Exd1	92	71.591	ENSMLUG00000001466	EXD1	99	71.591	Myotis_lucifugus
ENSRNOG00000025360	Exd1	100	76.399	ENSNGAG00000002319	Exd1	100	76.399	Nannospalax_galili
ENSRNOG00000025360	Exd1	99	68.924	ENSNLEG00000003456	EXD1	98	70.356	Nomascus_leucogenys
ENSRNOG00000025360	Exd1	88	63.198	ENSOPRG00000016433	EXD1	99	63.198	Ochotona_princeps
ENSRNOG00000025360	Exd1	68	44.444	ENSONIG00000012043	-	97	44.961	Oreochromis_niloticus
ENSRNOG00000025360	Exd1	89	69.412	ENSOCUG00000013817	EXD1	99	69.412	Oryctolagus_cuniculus
ENSRNOG00000025360	Exd1	68	43.264	ENSORLG00000026344	-	73	43.264	Oryzias_latipes
ENSRNOG00000025360	Exd1	68	43.264	ENSORLG00020005465	-	73	43.264	Oryzias_latipes_hni
ENSRNOG00000025360	Exd1	68	42.746	ENSORLG00015004848	-	67	48.905	Oryzias_latipes_hsok
ENSRNOG00000025360	Exd1	68	44.041	ENSOMEG00000019812	-	77	42.892	Oryzias_melastigma
ENSRNOG00000025360	Exd1	90	65.192	ENSOGAG00000013095	EXD1	99	65.385	Otolemur_garnettii
ENSRNOG00000025360	Exd1	99	73.684	ENSOARG00000020330	EXD1	99	73.684	Ovis_aries
ENSRNOG00000025360	Exd1	99	72.426	ENSPPAG00000033760	EXD1	99	72.426	Pan_paniscus
ENSRNOG00000025360	Exd1	99	73.776	ENSPPRG00000011128	EXD1	99	73.776	Panthera_pardus
ENSRNOG00000025360	Exd1	99	74.171	ENSPTIG00000020026	EXD1	99	74.171	Panthera_tigris_altaica
ENSRNOG00000025360	Exd1	99	72.600	ENSPTRG00000006941	EXD1	99	72.600	Pan_troglodytes
ENSRNOG00000025360	Exd1	99	72.600	ENSPANG00000019000	EXD1	99	72.600	Papio_anubis
ENSRNOG00000025360	Exd1	72	43.137	ENSPKIG00000000671	-	73	43.137	Paramormyrops_kingsleyae
ENSRNOG00000025360	Exd1	98	51.038	ENSPSIG00000014473	EXD1	92	51.211	Pelodiscus_sinensis
ENSRNOG00000025360	Exd1	72	38.119	ENSPMGG00000015466	-	78	38.119	Periophthalmus_magnuspinnatus
ENSRNOG00000025360	Exd1	73	73.253	ENSPCIG00000027845	EXD1	81	76.573	Phascolarctos_cinereus
ENSRNOG00000025360	Exd1	69	40.609	ENSPFOG00000013673	-	96	40.609	Poecilia_formosa
ENSRNOG00000025360	Exd1	69	42.308	ENSPLAG00000014262	-	71	42.308	Poecilia_latipinna
ENSRNOG00000025360	Exd1	69	42.051	ENSPMEG00000012071	-	71	42.051	Poecilia_mexicana
ENSRNOG00000025360	Exd1	69	42.640	ENSPREG00000019468	-	71	42.640	Poecilia_reticulata
ENSRNOG00000025360	Exd1	88	70.949	ENSPPYG00000006369	EXD1	98	71.542	Pongo_abelii
ENSRNOG00000025360	Exd1	67	60.513	ENSPCAG00000005269	-	75	60.513	Procavia_capensis
ENSRNOG00000025360	Exd1	99	71.951	ENSPCOG00000026598	EXD1	99	73.643	Propithecus_coquereli
ENSRNOG00000025360	Exd1	87	74.000	ENSPVAG00000003149	EXD1	98	74.000	Pteropus_vampyrus
ENSRNOG00000025360	Exd1	71	43.035	ENSPNAG00000008931	exd1	79	43.035	Pygocentrus_nattereri
ENSRNOG00000025360	Exd1	62	84.375	ENSRBIG00000037257	EXD1	100	84.375	Rhinopithecus_bieti
ENSRNOG00000025360	Exd1	99	72.251	ENSRROG00000034491	EXD1	99	72.251	Rhinopithecus_roxellana
ENSRNOG00000025360	Exd1	99	66.084	ENSSBOG00000024842	EXD1	99	66.084	Saimiri_boliviensis_boliviensis
ENSRNOG00000025360	Exd1	91	62.756	ENSSHAG00000016701	EXD1	100	62.756	Sarcophilus_harrisii
ENSRNOG00000025360	Exd1	71	45.250	ENSSDUG00000004368	exd1	67	45.500	Seriola_dumerili
ENSRNOG00000025360	Exd1	85	67.959	ENSSARG00000009556	-	98	67.396	Sorex_araneus
ENSRNOG00000025360	Exd1	98	44.092	ENSSPUG00000001716	EXD1	91	44.092	Sphenodon_punctatus
ENSRNOG00000025360	Exd1	99	73.077	ENSSSCG00000004752	EXD1	99	73.077	Sus_scrofa
ENSRNOG00000025360	Exd1	70	39.702	ENSTNIG00000017431	-	95	39.702	Tetraodon_nigroviridis
ENSRNOG00000025360	Exd1	73	59.382	ENSTBEG00000003085	EXD1	99	59.382	Tupaia_belangeri
ENSRNOG00000025360	Exd1	87	72.255	ENSTTRG00000009809	EXD1	97	72.056	Tursiops_truncatus
ENSRNOG00000025360	Exd1	99	74.346	ENSUMAG00000012170	EXD1	99	74.346	Ursus_maritimus
ENSRNOG00000025360	Exd1	88	72.441	ENSVPAG00000007758	EXD1	99	72.441	Vicugna_pacos
ENSRNOG00000025360	Exd1	99	71.030	ENSVVUG00000026704	EXD1	99	71.030	Vulpes_vulpes
ENSRNOG00000025360	Exd1	69	46.500	ENSXETG00000017895	exd1	95	46.500	Xenopus_tropicalis
ENSRNOG00000025360	Exd1	59	42.727	ENSXCOG00000010879	-	84	42.727	Xiphophorus_couchianus
ENSRNOG00000025360	Exd1	60	44.412	ENSXMAG00000014462	-	86	42.643	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008408	3'-5' exonuclease activity	-	IEA	Function
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0031047	gene silencing by RNA	-	ISO	Process
GO:0034587	piRNA metabolic process	-	IEA	Process
GO:0034587	piRNA metabolic process	-	ISO	Process
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	IEA	Process
GO:1990923	PET complex	-	IEA	Component
GO:1990923	PET complex	-	ISO	Component