EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000025424 (Gene tree)
Gene ID: 319113
Gene Symbol: Yrdc
Alias: LOC319113|MGC124843
Full Name: yrdC N(6)-threonylcarbamoyltransferase domain containing
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 4998 bases
Position: chr5:142845114-142850111
Accession: 708492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000037600	Sua5_yciO_yrdC	PF01300.18	1.4e-43	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000039870	-	1680	-	ENSRNOP00000037600	280 (aa)	-	Q499R4

Gene Model

Click here to download ENSRNOG00000025424's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000025424's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000025424	Yrdc	99	86.691	ENSG00000196449	YRDC	99	86.691	Homo_sapiens
ENSRNOG00000025424	Yrdc	75	60.476	ENSAPOG00000024293	yrdc	79	60.476	Acanthochromis_polyacanthus
ENSRNOG00000025424	Yrdc	67	87.701	ENSAMEG00000001173	YRDC	99	87.701	Ailuropoda_melanoleuca
ENSRNOG00000025424	Yrdc	75	62.679	ENSACIG00000017330	yrdc	77	62.679	Amphilophus_citrinellus
ENSRNOG00000025424	Yrdc	75	60.952	ENSAOCG00000021647	yrdc	79	60.952	Amphiprion_ocellaris
ENSRNOG00000025424	Yrdc	75	60.952	ENSAPEG00000006164	yrdc	79	60.952	Amphiprion_percula
ENSRNOG00000025424	Yrdc	73	63.235	ENSATEG00000010086	yrdc	75	63.235	Anabas_testudineus
ENSRNOG00000025424	Yrdc	69	65.979	ENSACAG00000017203	YRDC	94	65.327	Anolis_carolinensis
ENSRNOG00000025424	Yrdc	79	87.330	ENSANAG00000028788	-	93	87.330	Aotus_nancymaae
ENSRNOG00000025424	Yrdc	97	79.562	ENSANAG00000031052	-	97	79.562	Aotus_nancymaae
ENSRNOG00000025424	Yrdc	81	58.952	ENSACLG00000027775	yrdc	83	59.471	Astatotilapia_calliptera
ENSRNOG00000025424	Yrdc	83	59.052	ENSAMXG00000037791	yrdc	78	63.462	Astyanax_mexicanus
ENSRNOG00000025424	Yrdc	99	84.946	ENSBTAG00000006510	YRDC	99	83.154	Bos_taurus
ENSRNOG00000025424	Yrdc	83	37.768	WBGene00012997	Y48C3A.18	100	38.400	Caenorhabditis_elegans
ENSRNOG00000025424	Yrdc	99	87.050	ENSCJAG00000002078	YRDC	76	87.050	Callithrix_jacchus
ENSRNOG00000025424	Yrdc	100	78.571	ENSCAFG00000003253	YRDC	99	77.143	Canis_familiaris
ENSRNOG00000025424	Yrdc	100	80.714	ENSCAFG00020007843	YRDC	99	78.929	Canis_lupus_dingo
ENSRNOG00000025424	Yrdc	99	84.946	ENSCHIG00000007882	YRDC	99	83.154	Capra_hircus
ENSRNOG00000025424	Yrdc	64	88.827	ENSTSYG00000005555	YRDC	64	88.827	Carlito_syrichta
ENSRNOG00000025424	Yrdc	100	84.286	ENSCPOG00000036144	YRDC	100	84.286	Cavia_porcellus
ENSRNOG00000025424	Yrdc	99	87.050	ENSCCAG00000028891	YRDC	99	87.050	Cebus_capucinus
ENSRNOG00000025424	Yrdc	99	85.612	ENSCATG00000036928	YRDC	99	85.612	Cercocebus_atys
ENSRNOG00000025424	Yrdc	100	86.786	ENSCLAG00000015012	YRDC	100	86.786	Chinchilla_lanigera
ENSRNOG00000025424	Yrdc	99	85.612	ENSCSAG00000001116	YRDC	99	85.612	Chlorocebus_sabaeus
ENSRNOG00000025424	Yrdc	75	82.775	ENSCHOG00000005500	YRDC	100	82.775	Choloepus_hoffmanni
ENSRNOG00000025424	Yrdc	77	66.204	ENSCPBG00000018446	YRDC	92	66.204	Chrysemys_picta_bellii
ENSRNOG00000025424	Yrdc	73	48.357	ENSCING00000007564	-	98	48.357	Ciona_intestinalis
ENSRNOG00000025424	Yrdc	73	46.919	ENSCSAVG00000009982	-	98	46.919	Ciona_savignyi
ENSRNOG00000025424	Yrdc	99	85.971	ENSCANG00000031111	YRDC	99	85.971	Colobus_angolensis_palliatus
ENSRNOG00000025424	Yrdc	99	86.643	ENSCGRG00001000829	-	77	86.691	Cricetulus_griseus_chok1gshd
ENSRNOG00000025424	Yrdc	100	93.571	ENSCGRG00001014496	-	100	93.571	Cricetulus_griseus_chok1gshd
ENSRNOG00000025424	Yrdc	75	61.244	ENSCSEG00000019075	yrdc	75	61.244	Cynoglossus_semilaevis
ENSRNOG00000025424	Yrdc	82	55.844	ENSCVAG00000017355	yrdc	84	55.947	Cyprinodon_variegatus
ENSRNOG00000025424	Yrdc	81	57.826	ENSDARG00000041428	yrdc	91	59.091	Danio_rerio
ENSRNOG00000025424	Yrdc	71	62.000	ENSDNOG00000036198	-	97	62.000	Dasypus_novemcinctus
ENSRNOG00000025424	Yrdc	99	85.305	ENSDNOG00000038789	-	100	85.547	Dasypus_novemcinctus
ENSRNOG00000025424	Yrdc	70	90.863	ENSDORG00000008788	Yrdc	87	90.863	Dipodomys_ordii
ENSRNOG00000025424	Yrdc	73	48.058	FBgn0061361	CG33786	82	48.058	Drosophila_melanogaster
ENSRNOG00000025424	Yrdc	100	71.786	ENSETEG00000003442	YRDC	100	71.786	Echinops_telfairi
ENSRNOG00000025424	Yrdc	75	54.067	ENSEBUG00000014080	yrdc	85	54.854	Eptatretus_burgeri
ENSRNOG00000025424	Yrdc	99	86.380	ENSEASG00005012253	YRDC	99	86.380	Equus_asinus_asinus
ENSRNOG00000025424	Yrdc	99	86.738	ENSECAG00000022522	YRDC	99	86.738	Equus_caballus
ENSRNOG00000025424	Yrdc	79	60.619	ENSELUG00000018071	yrdc	73	60.619	Esox_lucius
ENSRNOG00000025424	Yrdc	100	86.429	ENSFCAG00000011018	YRDC	100	86.429	Felis_catus
ENSRNOG00000025424	Yrdc	69	32.227	ENSFALG00000011333	-	53	32.227	Ficedula_albicollis
ENSRNOG00000025424	Yrdc	68	73.822	ENSFALG00000000964	YRDC	89	72.821	Ficedula_albicollis
ENSRNOG00000025424	Yrdc	95	52.809	ENSFHEG00000001029	yrdc	84	56.604	Fundulus_heteroclitus
ENSRNOG00000025424	Yrdc	73	63.725	ENSGMOG00000015635	yrdc	97	63.725	Gadus_morhua
ENSRNOG00000025424	Yrdc	69	32.701	ENSGALG00000025899	-	67	32.701	Gallus_gallus
ENSRNOG00000025424	Yrdc	81	67.841	ENSGALG00000029001	YRDC	87	67.841	Gallus_gallus
ENSRNOG00000025424	Yrdc	82	55.411	ENSGAFG00000008396	yrdc	84	55.947	Gambusia_affinis
ENSRNOG00000025424	Yrdc	73	60.194	ENSGACG00000013878	yrdc	84	60.194	Gasterosteus_aculeatus
ENSRNOG00000025424	Yrdc	79	67.117	ENSGAGG00000014968	YRDC	96	67.117	Gopherus_agassizii
ENSRNOG00000025424	Yrdc	99	86.691	ENSGGOG00000007619	YRDC	99	86.691	Gorilla_gorilla
ENSRNOG00000025424	Yrdc	81	59.389	ENSHBUG00000009298	yrdc	83	59.912	Haplochromis_burtoni
ENSRNOG00000025424	Yrdc	100	87.500	ENSHGLG00000014075	YRDC	100	87.500	Heterocephalus_glaber_female
ENSRNOG00000025424	Yrdc	100	77.857	ENSHGLG00100002734	YRDC	100	77.143	Heterocephalus_glaber_male
ENSRNOG00000025424	Yrdc	81	57.522	ENSHCOG00000006598	yrdc	88	57.778	Hippocampus_comes
ENSRNOG00000025424	Yrdc	81	58.407	ENSIPUG00000014985	yrdc	92	58.407	Ictalurus_punctatus
ENSRNOG00000025424	Yrdc	99	87.097	ENSSTOG00000001643	YRDC	99	87.097	Ictidomys_tridecemlineatus
ENSRNOG00000025424	Yrdc	83	58.120	ENSKMAG00000013468	yrdc	85	58.621	Kryptolebias_marmoratus
ENSRNOG00000025424	Yrdc	81	58.952	ENSLBEG00000027501	yrdc	84	59.471	Labrus_bergylta
ENSRNOG00000025424	Yrdc	74	31.441	ENSLACG00000017624	si:ch211-153b23.3	66	31.441	Latimeria_chalumnae
ENSRNOG00000025424	Yrdc	74	64.734	ENSLACG00000010689	YRDC	95	64.734	Latimeria_chalumnae
ENSRNOG00000025424	Yrdc	75	63.810	ENSLOCG00000003321	yrdc	86	63.810	Lepisosteus_oculatus
ENSRNOG00000025424	Yrdc	100	85.000	ENSLAFG00000017556	YRDC	100	85.000	Loxodonta_africana
ENSRNOG00000025424	Yrdc	75	89.524	ENSMFAG00000003487	YRDC	99	89.524	Macaca_fascicularis
ENSRNOG00000025424	Yrdc	99	85.612	ENSMMUG00000005372	YRDC	74	85.612	Macaca_mulatta
ENSRNOG00000025424	Yrdc	99	85.612	ENSMNEG00000029348	YRDC	99	85.612	Macaca_nemestrina
ENSRNOG00000025424	Yrdc	53	87.248	ENSMLEG00000041122	YRDC	99	87.248	Mandrillus_leucophaeus
ENSRNOG00000025424	Yrdc	77	60.369	ENSMAMG00000007315	yrdc	79	60.369	Mastacembelus_armatus
ENSRNOG00000025424	Yrdc	81	58.952	ENSMZEG00005006948	yrdc	83	59.471	Maylandia_zebra
ENSRNOG00000025424	Yrdc	72	69.802	ENSMGAG00000002833	YRDC	99	69.802	Meleagris_gallopavo
ENSRNOG00000025424	Yrdc	69	32.701	ENSMGAG00000005489	-	53	32.701	Meleagris_gallopavo
ENSRNOG00000025424	Yrdc	99	86.022	ENSMICG00000031688	YRDC	100	86.022	Microcebus_murinus
ENSRNOG00000025424	Yrdc	75	93.301	ENSMOCG00000000164	-	81	93.301	Microtus_ochrogaster
ENSRNOG00000025424	Yrdc	83	57.265	ENSMMOG00000002119	yrdc	86	57.759	Mola_mola
ENSRNOG00000025424	Yrdc	98	71.174	ENSMODG00000017750	YRDC	98	69.751	Monodelphis_domestica
ENSRNOG00000025424	Yrdc	89	56.627	ENSMALG00000012471	yrdc	84	59.735	Monopterus_albus
ENSRNOG00000025424	Yrdc	100	91.071	MGP_CAROLIEiJ_G0026453	Yrdc	98	98.058	Mus_caroli
ENSRNOG00000025424	Yrdc	100	96.429	ENSMUSG00000028889	Yrdc	100	97.143	Mus_musculus
ENSRNOG00000025424	Yrdc	100	95.714	MGP_PahariEiJ_G0028784	Yrdc	100	96.190	Mus_pahari
ENSRNOG00000025424	Yrdc	100	96.786	MGP_SPRETEiJ_G0027432	Yrdc	100	96.786	Mus_spretus
ENSRNOG00000025424	Yrdc	78	87.156	ENSMPUG00000014542	YRDC	87	87.156	Mustela_putorius_furo
ENSRNOG00000025424	Yrdc	99	63.768	ENSMLUG00000028796	-	98	63.043	Myotis_lucifugus
ENSRNOG00000025424	Yrdc	70	81.538	ENSMLUG00000024310	-	96	81.538	Myotis_lucifugus
ENSRNOG00000025424	Yrdc	99	85.145	ENSMLUG00000000955	-	99	85.145	Myotis_lucifugus
ENSRNOG00000025424	Yrdc	100	84.286	ENSNGAG00000019099	Yrdc	100	84.286	Nannospalax_galili
ENSRNOG00000025424	Yrdc	83	58.547	ENSNBRG00000009475	yrdc	86	59.052	Neolamprologus_brichardi
ENSRNOG00000025424	Yrdc	99	86.331	ENSNLEG00000011665	YRDC	99	86.331	Nomascus_leucogenys
ENSRNOG00000025424	Yrdc	77	83.721	ENSMEUG00000005068	YRDC	100	83.721	Notamacropus_eugenii
ENSRNOG00000025424	Yrdc	100	85.714	ENSODEG00000007401	YRDC	100	91.429	Octodon_degus
ENSRNOG00000025424	Yrdc	83	58.547	ENSONIG00000016213	yrdc	96	59.052	Oreochromis_niloticus
ENSRNOG00000025424	Yrdc	100	87.500	ENSOCUG00000005384	YRDC	96	87.500	Oryctolagus_cuniculus
ENSRNOG00000025424	Yrdc	73	59.314	ENSORLG00000014393	yrdc	75	59.314	Oryzias_latipes
ENSRNOG00000025424	Yrdc	81	55.217	ENSORLG00020019663	yrdc	76	59.314	Oryzias_latipes_hni
ENSRNOG00000025424	Yrdc	81	54.783	ENSORLG00015004625	yrdc	76	59.606	Oryzias_latipes_hsok
ENSRNOG00000025424	Yrdc	87	53.689	ENSOMEG00000018550	yrdc	77	59.804	Oryzias_melastigma
ENSRNOG00000025424	Yrdc	99	85.145	ENSOGAG00000030474	YRDC	100	85.145	Otolemur_garnettii
ENSRNOG00000025424	Yrdc	93	83.525	ENSOARG00000019873	YRDC	83	87.500	Ovis_aries
ENSRNOG00000025424	Yrdc	53	88.435	ENSPPAG00000039722	-	99	88.435	Pan_paniscus
ENSRNOG00000025424	Yrdc	100	86.786	ENSPPRG00000007752	YRDC	100	86.786	Panthera_pardus
ENSRNOG00000025424	Yrdc	90	60.870	ENSPTIG00000019821	YRDC	78	74.731	Panthera_tigris_altaica
ENSRNOG00000025424	Yrdc	99	87.050	ENSPTRG00000000557	YRDC	99	87.050	Pan_troglodytes
ENSRNOG00000025424	Yrdc	99	85.612	ENSPANG00000006487	YRDC	75	85.612	Papio_anubis
ENSRNOG00000025424	Yrdc	78	59.447	ENSPKIG00000004574	yrdc	78	59.447	Paramormyrops_kingsleyae
ENSRNOG00000025424	Yrdc	92	59.770	ENSPSIG00000006483	YRDC	76	66.204	Pelodiscus_sinensis
ENSRNOG00000025424	Yrdc	73	61.765	ENSPMGG00000004184	yrdc	78	61.765	Periophthalmus_magnuspinnatus
ENSRNOG00000025424	Yrdc	65	92.818	ENSPEMG00000016985	Yrdc	90	81.081	Peromyscus_maniculatus_bairdii
ENSRNOG00000025424	Yrdc	63	56.742	ENSPMAG00000002905	yrdc	96	56.742	Petromyzon_marinus
ENSRNOG00000025424	Yrdc	94	74.721	ENSPCIG00000025731	YRDC	100	71.329	Phascolarctos_cinereus
ENSRNOG00000025424	Yrdc	82	55.844	ENSPFOG00000023097	yrdc	84	56.388	Poecilia_formosa
ENSRNOG00000025424	Yrdc	82	55.411	ENSPLAG00000020882	yrdc	84	55.947	Poecilia_latipinna
ENSRNOG00000025424	Yrdc	82	55.844	ENSPMEG00000013237	yrdc	84	56.388	Poecilia_mexicana
ENSRNOG00000025424	Yrdc	82	55.844	ENSPREG00000005285	yrdc	84	56.388	Poecilia_reticulata
ENSRNOG00000025424	Yrdc	85	86.498	ENSPPYG00000001523	-	93	88.158	Pongo_abelii
ENSRNOG00000025424	Yrdc	99	83.394	ENSPCAG00000016850	YRDC	99	83.394	Procavia_capensis
ENSRNOG00000025424	Yrdc	99	85.663	ENSPCOG00000013214	YRDC	99	85.663	Propithecus_coquereli
ENSRNOG00000025424	Yrdc	99	86.232	ENSPVAG00000010147	YRDC	99	86.232	Pteropus_vampyrus
ENSRNOG00000025424	Yrdc	81	59.389	ENSPNYG00000013956	yrdc	83	59.912	Pundamilia_nyererei
ENSRNOG00000025424	Yrdc	69	61.856	ENSPNAG00000015625	yrdc	79	61.856	Pygocentrus_nattereri
ENSRNOG00000025424	Yrdc	99	85.612	ENSRBIG00000032289	YRDC	99	85.612	Rhinopithecus_bieti
ENSRNOG00000025424	Yrdc	75	89.952	ENSRROG00000039370	YRDC	71	89.952	Rhinopithecus_roxellana
ENSRNOG00000025424	Yrdc	72	90.547	ENSSBOG00000018937	YRDC	86	90.547	Saimiri_boliviensis_boliviensis
ENSRNOG00000025424	Yrdc	52	83.562	ENSSHAG00000013957	-	99	83.562	Sarcophilus_harrisii
ENSRNOG00000025424	Yrdc	74	63.107	ENSSFOG00015006128	yrdc	88	63.107	Scleropages_formosus
ENSRNOG00000025424	Yrdc	75	62.264	ENSSMAG00000005195	yrdc	94	55.556	Scophthalmus_maximus
ENSRNOG00000025424	Yrdc	67	31.863	ENSSDUG00000006736	-	90	31.792	Seriola_dumerili
ENSRNOG00000025424	Yrdc	57	30.357	ENSSDUG00000006631	-	67	30.357	Seriola_dumerili
ENSRNOG00000025424	Yrdc	83	57.447	ENSSDUG00000009775	yrdc	86	57.940	Seriola_dumerili
ENSRNOG00000025424	Yrdc	83	57.447	ENSSLDG00000003196	yrdc	86	57.940	Seriola_lalandi_dorsalis
ENSRNOG00000025424	Yrdc	81	62.719	ENSSPUG00000003946	YRDC	84	63.111	Sphenodon_punctatus
ENSRNOG00000025424	Yrdc	83	54.894	ENSSPAG00000012559	yrdc	78	58.571	Stegastes_partitus
ENSRNOG00000025424	Yrdc	100	86.071	ENSSSCG00000040425	YRDC	100	86.071	Sus_scrofa
ENSRNOG00000025424	Yrdc	51	76.389	ENSTGUG00000001507	YRDC	98	76.389	Taeniopygia_guttata
ENSRNOG00000025424	Yrdc	71	58.500	ENSTRUG00000005923	yrdc	73	60.500	Takifugu_rubripes
ENSRNOG00000025424	Yrdc	56	89.241	ENSTBEG00000008863	YRDC	100	89.241	Tupaia_belangeri
ENSRNOG00000025424	Yrdc	53	86.486	ENSTTRG00000013538	-	99	86.486	Tursiops_truncatus
ENSRNOG00000025424	Yrdc	73	88.177	ENSUAMG00000006150	YRDC	100	88.177	Ursus_americanus
ENSRNOG00000025424	Yrdc	84	73.191	ENSVPAG00000006642	YRDC	96	72.566	Vicugna_pacos
ENSRNOG00000025424	Yrdc	54	83.553	ENSVVUG00000023132	-	50	83.553	Vulpes_vulpes
ENSRNOG00000025424	Yrdc	82	63.362	ENSXETG00000014420	yrdc	89	65.728	Xenopus_tropicalis
ENSRNOG00000025424	Yrdc	82	54.978	ENSXCOG00000000829	yrdc	94	55.507	Xiphophorus_couchianus
ENSRNOG00000025424	Yrdc	82	54.978	ENSXMAG00000014606	yrdc	79	55.507	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0006450	regulation of translational fidelity	21873635.	IBA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016020	membrane	-	ISO	Component
GO:0016779	nucleotidyltransferase activity	21873635.	IBA	Function
GO:0051051	negative regulation of transport	-	IEA	Process
GO:0051051	negative regulation of transport	-	ISO	Process