EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000025629 (Gene tree)
Gene ID: 361995
Gene Symbol: Prpf3
Alias: LOC361995
Full Name: pre-mRNA processing factor 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 24454 bases
Position: chr2:197947010-197971463
Accession: 1310555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000060155	PRP3	PF08572.10	5.3e-79	1	1
ENSRNOP00000068727	PRP3	PF08572.10	6.1e-79	1	1
ENSRNOP00000060155	PWI	PF01480.17	2.9e-13	1	1
ENSRNOP00000068727	PWI	PF01480.17	3.2e-13	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000063866	-	2331	XM_008761314	ENSRNOP00000060155	637 (aa)	XP_008759536	D3ZI99
ENSRNOT00000085971	-	2389	XM_006232968	ENSRNOP00000068727	683 (aa)	XP_006233030	A0A0G2JTI7

Gene Model

Click here to download ENSRNOG00000025629's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000025629's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000025629	Prpf3	100	99.414	ENSG00000117360	PRPF3	100	99.414	Homo_sapiens
ENSRNOG00000025629	Prpf3	100	71.893	ENSAPOG00000015584	prpf3	99	72.458	Acanthochromis_polyacanthus
ENSRNOG00000025629	Prpf3	100	99.268	ENSAMEG00000001630	PRPF3	100	99.268	Ailuropoda_melanoleuca
ENSRNOG00000025629	Prpf3	100	72.136	ENSACIG00000007876	prpf3	99	71.146	Amphilophus_citrinellus
ENSRNOG00000025629	Prpf3	100	71.186	ENSAOCG00000011449	prpf3	99	72.404	Amphiprion_ocellaris
ENSRNOG00000025629	Prpf3	100	71.550	ENSATEG00000023583	prpf3	99	71.977	Anabas_testudineus
ENSRNOG00000025629	Prpf3	100	94.444	ENSAPLG00000002440	PRPF3	100	94.444	Anas_platyrhynchos
ENSRNOG00000025629	Prpf3	100	92.431	ENSACAG00000003176	PRPF3	100	92.722	Anolis_carolinensis
ENSRNOG00000025629	Prpf3	100	99.414	ENSANAG00000026138	PRPF3	100	99.414	Aotus_nancymaae
ENSRNOG00000025629	Prpf3	100	72.583	ENSACLG00000020127	prpf3	99	72.294	Astatotilapia_calliptera
ENSRNOG00000025629	Prpf3	100	74.085	ENSAMXG00000007306	prpf3	99	73.662	Astyanax_mexicanus
ENSRNOG00000025629	Prpf3	100	99.414	ENSBTAG00000013946	PRPF3	100	99.414	Bos_taurus
ENSRNOG00000025629	Prpf3	81	38.612	WBGene00010844	prp-3	82	38.750	Caenorhabditis_elegans
ENSRNOG00000025629	Prpf3	100	99.414	ENSCJAG00000009926	PRPF3	100	99.414	Callithrix_jacchus
ENSRNOG00000025629	Prpf3	100	99.414	ENSCAFG00000011820	PRPF3	100	99.414	Canis_familiaris
ENSRNOG00000025629	Prpf3	86	99.269	ENSCAFG00020019653	PRPF3	100	99.269	Canis_lupus_dingo
ENSRNOG00000025629	Prpf3	100	99.414	ENSCHIG00000015434	PRPF3	100	99.414	Capra_hircus
ENSRNOG00000025629	Prpf3	100	99.122	ENSTSYG00000001383	PRPF3	100	99.122	Carlito_syrichta
ENSRNOG00000025629	Prpf3	93	82.075	ENSCAPG00000017812	PRPF3	95	82.547	Cavia_aperea
ENSRNOG00000025629	Prpf3	100	99.268	ENSCPOG00000008068	PRPF3	100	99.268	Cavia_porcellus
ENSRNOG00000025629	Prpf3	100	99.414	ENSCCAG00000026380	PRPF3	100	99.414	Cebus_capucinus
ENSRNOG00000025629	Prpf3	100	84.157	ENSCATG00000041778	PRPF3	100	84.157	Cercocebus_atys
ENSRNOG00000025629	Prpf3	100	99.268	ENSCLAG00000015009	PRPF3	100	99.268	Chinchilla_lanigera
ENSRNOG00000025629	Prpf3	77	99.291	ENSCHOG00000011645	PRPF3	77	99.291	Choloepus_hoffmanni
ENSRNOG00000025629	Prpf3	100	96.345	ENSCPBG00000008216	PRPF3	100	96.345	Chrysemys_picta_bellii
ENSRNOG00000025629	Prpf3	61	58.950	ENSCING00000003312	-	99	58.473	Ciona_intestinalis
ENSRNOG00000025629	Prpf3	83	54.035	ENSCSAVG00000008720	-	94	54.792	Ciona_savignyi
ENSRNOG00000025629	Prpf3	100	98.682	ENSCANG00000036769	PRPF3	100	98.682	Colobus_angolensis_palliatus
ENSRNOG00000025629	Prpf3	100	99.414	ENSCGRG00001019100	Prpf3	100	99.414	Cricetulus_griseus_chok1gshd
ENSRNOG00000025629	Prpf3	100	99.414	ENSCGRG00000007322	Prpf3	100	99.414	Cricetulus_griseus_crigri
ENSRNOG00000025629	Prpf3	100	72.152	ENSCSEG00000002532	prpf3	99	70.745	Cynoglossus_semilaevis
ENSRNOG00000025629	Prpf3	100	72.482	ENSCVAG00000009318	prpf3	99	72.057	Cyprinodon_variegatus
ENSRNOG00000025629	Prpf3	100	72.831	ENSDARG00000086425	prpf3	99	72.546	Danio_rerio
ENSRNOG00000025629	Prpf3	100	88.873	ENSDNOG00000005904	PRPF3	100	90.044	Dasypus_novemcinctus
ENSRNOG00000025629	Prpf3	93	99.054	ENSDORG00000008664	Prpf3	100	99.054	Dipodomys_ordii
ENSRNOG00000025629	Prpf3	81	52.910	FBgn0036915	Prp3	99	53.091	Drosophila_melanogaster
ENSRNOG00000025629	Prpf3	100	97.950	ENSETEG00000019124	PRPF3	100	97.950	Echinops_telfairi
ENSRNOG00000025629	Prpf3	100	64.208	ENSEBUG00000011680	prpf3	99	64.071	Eptatretus_burgeri
ENSRNOG00000025629	Prpf3	100	99.268	ENSEASG00005001566	PRPF3	100	99.268	Equus_asinus_asinus
ENSRNOG00000025629	Prpf3	100	99.414	ENSECAG00000019840	PRPF3	100	99.414	Equus_caballus
ENSRNOG00000025629	Prpf3	85	99.291	ENSEEUG00000007338	PRPF3	85	99.291	Erinaceus_europaeus
ENSRNOG00000025629	Prpf3	100	66.049	ENSELUG00000013624	prpf3	99	66.476	Esox_lucius
ENSRNOG00000025629	Prpf3	100	99.414	ENSFCAG00000013940	PRPF3	100	99.414	Felis_catus
ENSRNOG00000025629	Prpf3	100	98.829	ENSFDAG00000010365	PRPF3	100	98.829	Fukomys_damarensis
ENSRNOG00000025629	Prpf3	100	72.989	ENSFHEG00000021746	prpf3	99	72.701	Fundulus_heteroclitus
ENSRNOG00000025629	Prpf3	100	71.004	ENSGMOG00000008535	prpf3	99	70.863	Gadus_morhua
ENSRNOG00000025629	Prpf3	100	94.298	ENSGALG00000028205	PRPF3	100	94.298	Gallus_gallus
ENSRNOG00000025629	Prpf3	100	72.206	ENSGAFG00000012671	prpf3	99	71.920	Gambusia_affinis
ENSRNOG00000025629	Prpf3	100	70.963	ENSGACG00000011792	prpf3	99	71.246	Gasterosteus_aculeatus
ENSRNOG00000025629	Prpf3	100	96.053	ENSGAGG00000013765	PRPF3	100	95.811	Gopherus_agassizii
ENSRNOG00000025629	Prpf3	86	99.408	ENSGGOG00000013174	PRPF3	100	99.408	Gorilla_gorilla
ENSRNOG00000025629	Prpf3	100	73.016	ENSHBUG00000003493	prpf3	99	72.727	Haplochromis_burtoni
ENSRNOG00000025629	Prpf3	100	69.693	ENSHGLG00000016033	-	100	70.278	Heterocephalus_glaber_female
ENSRNOG00000025629	Prpf3	100	98.975	ENSHGLG00000016569	PRPF3	100	98.975	Heterocephalus_glaber_female
ENSRNOG00000025629	Prpf3	100	70.278	ENSHGLG00100008951	-	95	90.909	Heterocephalus_glaber_male
ENSRNOG00000025629	Prpf3	100	98.975	ENSHGLG00100007590	PRPF3	100	98.975	Heterocephalus_glaber_male
ENSRNOG00000025629	Prpf3	100	68.421	ENSHCOG00000014058	prpf3	99	68.137	Hippocampus_comes
ENSRNOG00000025629	Prpf3	100	73.466	ENSIPUG00000000902	PRPF3	99	73.752	Ictalurus_punctatus
ENSRNOG00000025629	Prpf3	100	99.414	ENSSTOG00000001889	PRPF3	100	99.414	Ictidomys_tridecemlineatus
ENSRNOG00000025629	Prpf3	100	71.124	ENSKMAG00000001390	prpf3	99	70.839	Kryptolebias_marmoratus
ENSRNOG00000025629	Prpf3	100	71.045	ENSLBEG00000026310	prpf3	99	71.328	Labrus_bergylta
ENSRNOG00000025629	Prpf3	96	82.248	ENSLACG00000010541	PRPF3	100	82.261	Latimeria_chalumnae
ENSRNOG00000025629	Prpf3	100	99.122	ENSLAFG00000004713	PRPF3	100	99.122	Loxodonta_africana
ENSRNOG00000025629	Prpf3	100	99.414	ENSMFAG00000039791	PRPF3	100	99.414	Macaca_fascicularis
ENSRNOG00000025629	Prpf3	98	99.203	ENSMMUG00000016301	PRPF3	100	99.203	Macaca_mulatta
ENSRNOG00000025629	Prpf3	100	99.414	ENSMNEG00000038161	PRPF3	100	99.414	Macaca_nemestrina
ENSRNOG00000025629	Prpf3	99	66.962	ENSMLEG00000041065	-	98	66.372	Mandrillus_leucophaeus
ENSRNOG00000025629	Prpf3	86	99.408	ENSMLEG00000040609	PRPF3	100	99.408	Mandrillus_leucophaeus
ENSRNOG00000025629	Prpf3	100	72.096	ENSMAMG00000014968	prpf3	99	71.955	Mastacembelus_armatus
ENSRNOG00000025629	Prpf3	100	70.968	ENSMZEG00005015970	prpf3	99	70.646	Maylandia_zebra
ENSRNOG00000025629	Prpf3	100	94.298	ENSMGAG00000000707	PRPF3	100	94.298	Meleagris_gallopavo
ENSRNOG00000025629	Prpf3	100	99.122	ENSMAUG00000017112	Prpf3	100	99.122	Mesocricetus_auratus
ENSRNOG00000025629	Prpf3	100	99.414	ENSMICG00000015386	PRPF3	100	99.414	Microcebus_murinus
ENSRNOG00000025629	Prpf3	100	99.268	ENSMOCG00000000242	Prpf3	100	99.268	Microtus_ochrogaster
ENSRNOG00000025629	Prpf3	100	66.243	ENSMMOG00000016131	prpf3	99	66.808	Mola_mola
ENSRNOG00000025629	Prpf3	100	97.804	ENSMODG00000018774	PRPF3	100	97.804	Monodelphis_domestica
ENSRNOG00000025629	Prpf3	100	70.429	ENSMALG00000007257	prpf3	99	70.429	Monopterus_albus
ENSRNOG00000025629	Prpf3	100	99.854	MGP_CAROLIEiJ_G0025354	Prpf3	100	99.854	Mus_caroli
ENSRNOG00000025629	Prpf3	100	99.854	ENSMUSG00000015748	Prpf3	100	99.854	Mus_musculus
ENSRNOG00000025629	Prpf3	100	99.707	MGP_PahariEiJ_G0026798	Prpf3	100	99.707	Mus_pahari
ENSRNOG00000025629	Prpf3	100	99.854	MGP_SPRETEiJ_G0026298	Prpf3	100	99.854	Mus_spretus
ENSRNOG00000025629	Prpf3	100	96.047	ENSMPUG00000005080	PRPF3	100	96.047	Mustela_putorius_furo
ENSRNOG00000025629	Prpf3	100	98.684	ENSMLUG00000004646	-	100	98.684	Myotis_lucifugus
ENSRNOG00000025629	Prpf3	100	99.414	ENSNGAG00000000910	Prpf3	100	99.414	Nannospalax_galili
ENSRNOG00000025629	Prpf3	100	70.670	ENSNBRG00000003462	prpf3	99	70.391	Neolamprologus_brichardi
ENSRNOG00000025629	Prpf3	96	99.349	ENSNLEG00000009841	PRPF3	100	99.349	Nomascus_leucogenys
ENSRNOG00000025629	Prpf3	83	99.115	ENSMEUG00000008733	PRPF3	89	99.115	Notamacropus_eugenii
ENSRNOG00000025629	Prpf3	100	98.829	ENSOPRG00000010139	PRPF3	100	98.829	Ochotona_princeps
ENSRNOG00000025629	Prpf3	100	73.623	ENSODEG00000014412	-	100	73.623	Octodon_degus
ENSRNOG00000025629	Prpf3	100	99.268	ENSODEG00000011363	-	100	99.268	Octodon_degus
ENSRNOG00000025629	Prpf3	100	70.927	ENSONIG00000006394	prpf3	99	70.787	Oreochromis_niloticus
ENSRNOG00000025629	Prpf3	100	65.407	ENSOANG00000015441	PRPF3	100	65.116	Ornithorhynchus_anatinus
ENSRNOG00000025629	Prpf3	100	99.414	ENSOCUG00000011760	PRPF3	100	99.414	Oryctolagus_cuniculus
ENSRNOG00000025629	Prpf3	100	72.792	ENSORLG00000010330	prpf3	99	71.937	Oryzias_latipes
ENSRNOG00000025629	Prpf3	100	72.792	ENSORLG00020009054	prpf3	99	71.937	Oryzias_latipes_hni
ENSRNOG00000025629	Prpf3	100	72.585	ENSORLG00015015016	prpf3	99	71.733	Oryzias_latipes_hsok
ENSRNOG00000025629	Prpf3	100	71.920	ENSOMEG00000000940	prpf3	99	71.633	Oryzias_melastigma
ENSRNOG00000025629	Prpf3	100	93.275	ENSOGAG00000005352	PRPF3	100	93.275	Otolemur_garnettii
ENSRNOG00000025629	Prpf3	100	99.414	ENSOARG00000020798	PRPF3	100	99.414	Ovis_aries
ENSRNOG00000025629	Prpf3	100	99.268	ENSPPAG00000030983	PRPF3	100	99.268	Pan_paniscus
ENSRNOG00000025629	Prpf3	99	75.816	ENSPPAG00000043769	-	99	75.371	Pan_paniscus
ENSRNOG00000025629	Prpf3	100	99.414	ENSPPRG00000000731	PRPF3	100	99.414	Panthera_pardus
ENSRNOG00000025629	Prpf3	100	99.414	ENSPTIG00000005516	PRPF3	100	99.414	Panthera_tigris_altaica
ENSRNOG00000025629	Prpf3	99	74.926	ENSPTRG00000047819	-	99	74.481	Pan_troglodytes
ENSRNOG00000025629	Prpf3	100	99.414	ENSPTRG00000001254	PRPF3	100	99.414	Pan_troglodytes
ENSRNOG00000025629	Prpf3	100	99.268	ENSPANG00000000499	PRPF3	100	99.268	Papio_anubis
ENSRNOG00000025629	Prpf3	100	74.322	ENSPKIG00000010501	prpf3	99	74.465	Paramormyrops_kingsleyae
ENSRNOG00000025629	Prpf3	100	96.053	ENSPSIG00000014877	PRPF3	100	95.906	Pelodiscus_sinensis
ENSRNOG00000025629	Prpf3	100	67.294	ENSPMGG00000007776	prpf3	99	66.425	Periophthalmus_magnuspinnatus
ENSRNOG00000025629	Prpf3	100	99.414	ENSPEMG00000011672	Prpf3	100	99.414	Peromyscus_maniculatus_bairdii
ENSRNOG00000025629	Prpf3	63	72.146	ENSPMAG00000005588	prpf3	99	69.757	Petromyzon_marinus
ENSRNOG00000025629	Prpf3	100	97.804	ENSPCIG00000008795	PRPF3	100	97.804	Phascolarctos_cinereus
ENSRNOG00000025629	Prpf3	100	72.096	ENSPFOG00000013638	prpf3	99	71.530	Poecilia_formosa
ENSRNOG00000025629	Prpf3	100	72.119	ENSPLAG00000018103	prpf3	99	72.286	Poecilia_latipinna
ENSRNOG00000025629	Prpf3	100	72.206	ENSPMEG00000023546	prpf3	99	72.000	Poecilia_mexicana
ENSRNOG00000025629	Prpf3	100	72.143	ENSPREG00000017216	prpf3	99	71.857	Poecilia_reticulata
ENSRNOG00000025629	Prpf3	81	86.965	ENSPPYG00000018646	-	100	86.965	Pongo_abelii
ENSRNOG00000025629	Prpf3	96	99.349	ENSPPYG00000000900	PRPF3	99	99.370	Pongo_abelii
ENSRNOG00000025629	Prpf3	87	98.308	ENSPCAG00000014908	PRPF3	87	98.308	Procavia_capensis
ENSRNOG00000025629	Prpf3	100	99.268	ENSPCOG00000013828	PRPF3	100	99.268	Propithecus_coquereli
ENSRNOG00000025629	Prpf3	100	98.243	ENSPVAG00000013472	PRPF3	100	98.243	Pteropus_vampyrus
ENSRNOG00000025629	Prpf3	100	73.016	ENSPNYG00000004279	prpf3	99	72.727	Pundamilia_nyererei
ENSRNOG00000025629	Prpf3	100	73.239	ENSPNAG00000001799	prpf3	99	73.380	Pygocentrus_nattereri
ENSRNOG00000025629	Prpf3	83	96.454	ENSRBIG00000028854	PRPF3	98	96.454	Rhinopithecus_bieti
ENSRNOG00000025629	Prpf3	100	99.414	ENSRROG00000027464	PRPF3	100	99.414	Rhinopithecus_roxellana
ENSRNOG00000025629	Prpf3	100	92.533	ENSSBOG00000033104	PRPF3	100	92.533	Saimiri_boliviensis_boliviensis
ENSRNOG00000025629	Prpf3	100	97.661	ENSSHAG00000009548	PRPF3	100	97.661	Sarcophilus_harrisii
ENSRNOG00000025629	Prpf3	100	73.662	ENSSFOG00015022014	prpf3	99	73.239	Scleropages_formosus
ENSRNOG00000025629	Prpf3	100	72.090	ENSSMAG00000015739	prpf3	99	71.809	Scophthalmus_maximus
ENSRNOG00000025629	Prpf3	100	69.010	ENSSDUG00000006840	prpf3	99	69.010	Seriola_dumerili
ENSRNOG00000025629	Prpf3	100	70.769	ENSSLDG00000015423	prpf3	99	71.189	Seriola_lalandi_dorsalis
ENSRNOG00000025629	Prpf3	100	98.829	ENSSARG00000011064	PRPF3	100	98.829	Sorex_araneus
ENSRNOG00000025629	Prpf3	100	92.363	ENSSPUG00000000809	PRPF3	100	92.363	Sphenodon_punctatus
ENSRNOG00000025629	Prpf3	100	71.208	ENSSPAG00000018721	prpf3	99	72.136	Stegastes_partitus
ENSRNOG00000025629	Prpf3	100	99.414	ENSSSCG00000030119	PRPF3	100	99.414	Sus_scrofa
ENSRNOG00000025629	Prpf3	100	80.848	ENSTGUG00000004552	PRPF3	100	80.848	Taeniopygia_guttata
ENSRNOG00000025629	Prpf3	100	70.954	ENSTRUG00000014923	prpf3	99	70.665	Takifugu_rubripes
ENSRNOG00000025629	Prpf3	100	72.340	ENSTNIG00000008058	prpf3	100	71.165	Tetraodon_nigroviridis
ENSRNOG00000025629	Prpf3	82	99.167	ENSTBEG00000014072	PRPF3	88	99.167	Tupaia_belangeri
ENSRNOG00000025629	Prpf3	100	93.265	ENSTTRG00000010616	PRPF3	100	93.265	Tursiops_truncatus
ENSRNOG00000025629	Prpf3	80	99.270	ENSUAMG00000009345	PRPF3	100	99.270	Ursus_americanus
ENSRNOG00000025629	Prpf3	100	99.414	ENSUMAG00000003720	PRPF3	100	99.414	Ursus_maritimus
ENSRNOG00000025629	Prpf3	89	99.405	ENSVPAG00000005425	PRPF3	89	99.405	Vicugna_pacos
ENSRNOG00000025629	Prpf3	100	99.414	ENSVVUG00000007933	PRPF3	100	99.414	Vulpes_vulpes
ENSRNOG00000025629	Prpf3	100	87.663	ENSXETG00000018654	prpf3	100	87.663	Xenopus_tropicalis
ENSRNOG00000025629	Prpf3	100	71.835	ENSXMAG00000016347	prpf3	99	72.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	-	IEA	Process
GO:0000244	spliceosomal tri-snRNP complex assembly	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0005515	protein binding	21070191.	IPI	Function
GO:0005634	nucleus	21070191.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0015030	Cajal body	-	IEA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0032991	protein-containing complex	21070191.	IDA	Component
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component