EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000025716 (Gene tree)
Gene ID: 366468
Gene Symbol: Lsm10
Alias: LOC366468
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 1907 bases
Position: chr5:144106802-144108708
Accession: 1584914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000038817	LSM	PF01423.22	5.1e-13	1	1
ENSRNOP00000072418	LSM	PF01423.22	5.1e-13	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000035637	-	816	XM_006238895	ENSRNOP00000038817	122 (aa)	XP_006238957	B2RYU1
ENSRNOT00000079779	-	844	XM_006238896	ENSRNOP00000072418	122 (aa)	XP_006238958	B2RYU1

Gene Model

Click here to download ENSRNOG00000025716's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000025716's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000025716	Lsm10	98	91.667	ENSG00000181817	LSM10	98	91.667	Homo_sapiens
ENSRNOG00000025716	Lsm10	99	91.736	ENSAMEG00000019854	LSM10	98	91.736	Ailuropoda_melanoleuca
ENSRNOG00000025716	Lsm10	97	66.102	ENSACIG00000015420	oscp1a	78	66.102	Amphilophus_citrinellus
ENSRNOG00000025716	Lsm10	94	68.696	ENSAOCG00000014654	-	95	68.696	Amphiprion_ocellaris
ENSRNOG00000025716	Lsm10	94	68.696	ENSAOCG00000015618	LSM10	95	68.696	Amphiprion_ocellaris
ENSRNOG00000025716	Lsm10	91	65.766	ENSAOCG00000015607	LSM10	86	65.766	Amphiprion_ocellaris
ENSRNOG00000025716	Lsm10	91	65.766	ENSAPEG00000021851	LSM10	86	65.766	Amphiprion_percula
ENSRNOG00000025716	Lsm10	94	68.696	ENSAPEG00000021845	-	95	68.696	Amphiprion_percula
ENSRNOG00000025716	Lsm10	92	62.500	ENSATEG00000006310	oscp1a	83	62.500	Anabas_testudineus
ENSRNOG00000025716	Lsm10	96	68.376	ENSACAG00000001231	LSM10	95	68.376	Anolis_carolinensis
ENSRNOG00000025716	Lsm10	98	92.500	ENSANAG00000018759	-	98	92.500	Aotus_nancymaae
ENSRNOG00000025716	Lsm10	98	90.833	ENSANAG00000031489	-	98	90.833	Aotus_nancymaae
ENSRNOG00000025716	Lsm10	95	66.379	ENSACLG00000004728	oscp1a	94	66.379	Astatotilapia_calliptera
ENSRNOG00000025716	Lsm10	98	66.387	ENSAMXG00000025301	oscp1a	98	66.387	Astyanax_mexicanus
ENSRNOG00000025716	Lsm10	98	91.667	ENSBTAG00000024096	LSM10	98	91.667	Bos_taurus
ENSRNOG00000025716	Lsm10	98	91.667	ENSCJAG00000044880	LSM10	98	91.667	Callithrix_jacchus
ENSRNOG00000025716	Lsm10	99	95.041	ENSCAFG00000003382	LSM10	98	95.041	Canis_familiaris
ENSRNOG00000025716	Lsm10	99	95.041	ENSCAFG00020008920	LSM10	98	95.041	Canis_lupus_dingo
ENSRNOG00000025716	Lsm10	98	91.667	ENSCHIG00000009398	LSM10	98	91.667	Capra_hircus
ENSRNOG00000025716	Lsm10	99	90.909	ENSCAPG00000012567	LSM10	98	90.909	Cavia_aperea
ENSRNOG00000025716	Lsm10	99	90.909	ENSCPOG00000039302	LSM10	98	90.909	Cavia_porcellus
ENSRNOG00000025716	Lsm10	98	92.500	ENSCCAG00000018913	-	98	92.500	Cebus_capucinus
ENSRNOG00000025716	Lsm10	98	90.833	ENSCCAG00000008378	-	98	90.833	Cebus_capucinus
ENSRNOG00000025716	Lsm10	98	93.333	ENSCATG00000006589	LSM10	98	93.333	Cercocebus_atys
ENSRNOG00000025716	Lsm10	99	92.562	ENSCLAG00000008633	LSM10	98	92.562	Chinchilla_lanigera
ENSRNOG00000025716	Lsm10	98	93.333	ENSCSAG00000000134	LSM10	98	93.333	Chlorocebus_sabaeus
ENSRNOG00000025716	Lsm10	99	91.870	ENSCHOG00000008615	LSM10	98	91.870	Choloepus_hoffmanni
ENSRNOG00000025716	Lsm10	84	31.373	ENSCSAVG00000001896	-	87	31.373	Ciona_savignyi
ENSRNOG00000025716	Lsm10	98	93.333	ENSCANG00000019928	LSM10	98	93.333	Colobus_angolensis_palliatus
ENSRNOG00000025716	Lsm10	99	96.694	ENSCGRG00001004317	-	99	96.694	Cricetulus_griseus_chok1gshd
ENSRNOG00000025716	Lsm10	94	86.325	ENSCGRG00001022673	-	94	86.325	Cricetulus_griseus_chok1gshd
ENSRNOG00000025716	Lsm10	94	86.325	ENSCGRG00000015514	-	94	86.325	Cricetulus_griseus_crigri
ENSRNOG00000025716	Lsm10	99	96.694	ENSCGRG00000014935	-	99	96.694	Cricetulus_griseus_crigri
ENSRNOG00000025716	Lsm10	95	62.931	ENSCSEG00000010374	oscp1a	77	63.478	Cynoglossus_semilaevis
ENSRNOG00000025716	Lsm10	98	64.706	ENSCVAG00000001536	oscp1a	90	64.706	Cyprinodon_variegatus
ENSRNOG00000025716	Lsm10	70	70.588	ENSDARG00000109563	CABZ01074453.1	99	70.588	Danio_rerio
ENSRNOG00000025716	Lsm10	99	70.248	ENSDARG00000101222	oscp1a	100	70.248	Danio_rerio
ENSRNOG00000025716	Lsm10	98	95.000	ENSDNOG00000036662	LSM10	98	95.000	Dasypus_novemcinctus
ENSRNOG00000025716	Lsm10	99	94.215	ENSDORG00000007579	Lsm10	98	94.215	Dipodomys_ordii
ENSRNOG00000025716	Lsm10	99	91.736	ENSETEG00000005703	LSM10	98	91.736	Echinops_telfairi
ENSRNOG00000025716	Lsm10	100	49.180	ENSEBUG00000001312	oscp1a	100	49.180	Eptatretus_burgeri
ENSRNOG00000025716	Lsm10	99	95.041	ENSEASG00005012194	LSM10	98	95.041	Equus_asinus_asinus
ENSRNOG00000025716	Lsm10	99	95.868	ENSECAG00000005071	LSM10	98	95.868	Equus_caballus
ENSRNOG00000025716	Lsm10	99	93.388	ENSEEUG00000012032	LSM10	98	93.388	Erinaceus_europaeus
ENSRNOG00000025716	Lsm10	99	66.116	ENSELUG00000007452	oscp1a	99	66.116	Esox_lucius
ENSRNOG00000025716	Lsm10	96	71.795	ENSFALG00000000851	LSM10	95	71.795	Ficedula_albicollis
ENSRNOG00000025716	Lsm10	99	89.256	ENSFDAG00000021056	LSM10	98	89.256	Fukomys_damarensis
ENSRNOG00000025716	Lsm10	89	67.273	ENSFHEG00000001058	oscp1a	95	67.273	Fundulus_heteroclitus
ENSRNOG00000025716	Lsm10	87	66.038	ENSGMOG00000019832	oscp1a	89	66.038	Gadus_morhua
ENSRNOG00000025716	Lsm10	99	72.727	ENSGALG00000002127	LSM10	98	72.727	Gallus_gallus
ENSRNOG00000025716	Lsm10	96	59.167	ENSGAFG00000016445	oscp1a	96	59.167	Gambusia_affinis
ENSRNOG00000025716	Lsm10	95	63.793	ENSGACG00000002329	oscp1a	95	63.793	Gasterosteus_aculeatus
ENSRNOG00000025716	Lsm10	99	73.554	ENSGAGG00000024848	LSM10	98	73.554	Gopherus_agassizii
ENSRNOG00000025716	Lsm10	98	93.333	ENSGGOG00000003556	LSM10	98	93.333	Gorilla_gorilla
ENSRNOG00000025716	Lsm10	95	66.379	ENSHBUG00000001722	oscp1a	94	66.379	Haplochromis_burtoni
ENSRNOG00000025716	Lsm10	99	90.083	ENSHGLG00000011625	LSM10	98	90.083	Heterocephalus_glaber_female
ENSRNOG00000025716	Lsm10	99	90.083	ENSHGLG00100001769	LSM10	98	90.083	Heterocephalus_glaber_male
ENSRNOG00000025716	Lsm10	86	68.571	ENSIPUG00000005808	oscp1a	91	68.571	Ictalurus_punctatus
ENSRNOG00000025716	Lsm10	99	94.215	ENSSTOG00000000606	LSM10	98	94.215	Ictidomys_tridecemlineatus
ENSRNOG00000025716	Lsm10	95	63.793	ENSKMAG00000012143	oscp1a	96	63.793	Kryptolebias_marmoratus
ENSRNOG00000025716	Lsm10	98	63.333	ENSLBEG00000017764	oscp1a	98	63.333	Labrus_bergylta
ENSRNOG00000025716	Lsm10	99	72.727	ENSLACG00000015904	LSM10	93	72.727	Latimeria_chalumnae
ENSRNOG00000025716	Lsm10	98	70.000	ENSLOCG00000018277	oscp1a	98	70.000	Lepisosteus_oculatus
ENSRNOG00000025716	Lsm10	98	95.833	ENSLAFG00000009600	LSM10	98	95.833	Loxodonta_africana
ENSRNOG00000025716	Lsm10	98	93.333	ENSMFAG00000009115	LSM10	98	93.333	Macaca_fascicularis
ENSRNOG00000025716	Lsm10	98	93.333	ENSMMUG00000017338	LSM10	98	93.333	Macaca_mulatta
ENSRNOG00000025716	Lsm10	98	93.333	ENSMNEG00000020023	LSM10	98	93.333	Macaca_nemestrina
ENSRNOG00000025716	Lsm10	98	93.333	ENSMLEG00000025150	LSM10	98	93.333	Mandrillus_leucophaeus
ENSRNOG00000025716	Lsm10	98	63.333	ENSMAMG00000004427	oscp1a	98	63.333	Mastacembelus_armatus
ENSRNOG00000025716	Lsm10	95	66.379	ENSMZEG00005026307	oscp1a	94	66.379	Maylandia_zebra
ENSRNOG00000025716	Lsm10	99	71.901	ENSMGAG00000015707	LSM10	98	71.901	Meleagris_gallopavo
ENSRNOG00000025716	Lsm10	99	95.868	ENSMAUG00000016624	Lsm10	99	95.868	Mesocricetus_auratus
ENSRNOG00000025716	Lsm10	99	96.694	ENSMOCG00000021943	Lsm10	99	96.694	Microtus_ochrogaster
ENSRNOG00000025716	Lsm10	96	65.254	ENSMMOG00000013597	oscp1a	88	65.254	Mola_mola
ENSRNOG00000025716	Lsm10	99	81.818	ENSMODG00000023328	LSM10	98	81.818	Monodelphis_domestica
ENSRNOG00000025716	Lsm10	57	58.108	ENSMALG00000012661	oscp1a	58	58.108	Monopterus_albus
ENSRNOG00000025716	Lsm10	100	98.361	MGP_CAROLIEiJ_G0026467	Lsm10	100	98.361	Mus_caroli
ENSRNOG00000025716	Lsm10	100	99.180	ENSMUSG00000050188	Lsm10	100	99.180	Mus_musculus
ENSRNOG00000025716	Lsm10	100	99.180	MGP_PahariEiJ_G0028798	Lsm10	100	99.180	Mus_pahari
ENSRNOG00000025716	Lsm10	100	99.180	MGP_SPRETEiJ_G0027446	Lsm10	100	99.180	Mus_spretus
ENSRNOG00000025716	Lsm10	99	95.041	ENSMPUG00000018593	LSM10	98	95.041	Mustela_putorius_furo
ENSRNOG00000025716	Lsm10	99	89.256	ENSMLUG00000023895	LSM10	98	89.256	Myotis_lucifugus
ENSRNOG00000025716	Lsm10	99	96.694	ENSNGAG00000015011	Lsm10	98	96.694	Nannospalax_galili
ENSRNOG00000025716	Lsm10	95	67.241	ENSNBRG00000014306	oscp1a	94	67.241	Neolamprologus_brichardi
ENSRNOG00000025716	Lsm10	98	93.333	ENSNLEG00000033754	LSM10	98	93.333	Nomascus_leucogenys
ENSRNOG00000025716	Lsm10	99	81.818	ENSMEUG00000006313	LSM10	98	81.818	Notamacropus_eugenii
ENSRNOG00000025716	Lsm10	99	91.736	ENSOPRG00000001699	LSM10	98	91.736	Ochotona_princeps
ENSRNOG00000025716	Lsm10	99	92.562	ENSODEG00000019161	LSM10	98	92.562	Octodon_degus
ENSRNOG00000025716	Lsm10	95	67.241	ENSONIG00000020904	oscp1a	95	67.241	Oreochromis_niloticus
ENSRNOG00000025716	Lsm10	100	76.230	ENSOANG00000002066	LSM10	99	76.230	Ornithorhynchus_anatinus
ENSRNOG00000025716	Lsm10	99	90.083	ENSOCUG00000005333	LSM10	98	90.083	Oryctolagus_cuniculus
ENSRNOG00000025716	Lsm10	97	64.407	ENSORLG00000009504	oscp1a	98	64.407	Oryzias_latipes
ENSRNOG00000025716	Lsm10	97	64.407	ENSORLG00020016201	oscp1a	98	64.407	Oryzias_latipes_hni
ENSRNOG00000025716	Lsm10	97	64.407	ENSORLG00015007794	oscp1a	97	64.407	Oryzias_latipes_hsok
ENSRNOG00000025716	Lsm10	99	92.562	ENSOGAG00000002653	LSM10	98	92.562	Otolemur_garnettii
ENSRNOG00000025716	Lsm10	98	91.667	ENSOARG00000009596	LSM10	98	91.667	Ovis_aries
ENSRNOG00000025716	Lsm10	98	91.667	ENSPPAG00000023465	LSM10	98	91.667	Pan_paniscus
ENSRNOG00000025716	Lsm10	99	95.041	ENSPPRG00000014619	LSM10	98	95.041	Panthera_pardus
ENSRNOG00000025716	Lsm10	99	95.041	ENSPTIG00000004613	LSM10	98	95.041	Panthera_tigris_altaica
ENSRNOG00000025716	Lsm10	98	91.667	ENSPTRG00000000539	LSM10	98	91.667	Pan_troglodytes
ENSRNOG00000025716	Lsm10	98	93.333	ENSPANG00000023172	LSM10	98	93.333	Papio_anubis
ENSRNOG00000025716	Lsm10	100	63.934	ENSPKIG00000003728	oscp1a	98	63.934	Paramormyrops_kingsleyae
ENSRNOG00000025716	Lsm10	99	72.727	ENSPSIG00000000590	LSM10	98	72.727	Pelodiscus_sinensis
ENSRNOG00000025716	Lsm10	62	63.158	ENSPMGG00000015718	oscp1a	99	63.158	Periophthalmus_magnuspinnatus
ENSRNOG00000025716	Lsm10	84	83.495	ENSPCIG00000014865	LSM10	76	83.495	Phascolarctos_cinereus
ENSRNOG00000025716	Lsm10	92	66.964	ENSPFOG00000020490	oscp1a	95	66.964	Poecilia_formosa
ENSRNOG00000025716	Lsm10	92	66.964	ENSPLAG00000016537	oscp1a	85	66.964	Poecilia_latipinna
ENSRNOG00000025716	Lsm10	89	67.593	ENSPMEG00000000174	oscp1a	94	67.593	Poecilia_mexicana
ENSRNOG00000025716	Lsm10	92	66.071	ENSPREG00000009899	oscp1a	85	66.071	Poecilia_reticulata
ENSRNOG00000025716	Lsm10	98	92.500	ENSPPYG00000001539	LSM10	98	92.500	Pongo_abelii
ENSRNOG00000025716	Lsm10	97	93.220	ENSPCAG00000002520	LSM10	97	93.220	Procavia_capensis
ENSRNOG00000025716	Lsm10	99	90.083	ENSPVAG00000008644	LSM10	98	90.083	Pteropus_vampyrus
ENSRNOG00000025716	Lsm10	95	66.379	ENSPNYG00000003138	oscp1a	94	66.379	Pundamilia_nyererei
ENSRNOG00000025716	Lsm10	97	65.254	ENSPNAG00000028829	oscp1a	98	65.254	Pygocentrus_nattereri
ENSRNOG00000025716	Lsm10	98	93.333	ENSRBIG00000001561	LSM10	98	93.333	Rhinopithecus_bieti
ENSRNOG00000025716	Lsm10	98	93.333	ENSRROG00000011414	LSM10	98	93.333	Rhinopithecus_roxellana
ENSRNOG00000025716	Lsm10	98	92.500	ENSSBOG00000036413	-	98	92.500	Saimiri_boliviensis_boliviensis
ENSRNOG00000025716	Lsm10	99	81.818	ENSSHAG00000018056	LSM10	98	81.818	Sarcophilus_harrisii
ENSRNOG00000025716	Lsm10	100	63.934	ENSSFOG00015019954	lsm10	100	63.934	Scleropages_formosus
ENSRNOG00000025716	Lsm10	94	65.217	ENSSMAG00000001297	oscp1a	98	65.217	Scophthalmus_maximus
ENSRNOG00000025716	Lsm10	95	63.793	ENSSDUG00000007090	oscp1a	94	63.793	Seriola_dumerili
ENSRNOG00000025716	Lsm10	95	64.655	ENSSLDG00000000800	oscp1a	96	64.655	Seriola_lalandi_dorsalis
ENSRNOG00000025716	Lsm10	99	90.244	ENSSARG00000004211	LSM10	98	91.870	Sorex_araneus
ENSRNOG00000025716	Lsm10	95	65.517	ENSSPAG00000009229	oscp1a	96	65.517	Stegastes_partitus
ENSRNOG00000025716	Lsm10	98	91.667	ENSSSCG00000038916	LSM10	98	91.667	Sus_scrofa
ENSRNOG00000025716	Lsm10	99	70.248	ENSTGUG00000001602	-	99	70.248	Taeniopygia_guttata
ENSRNOG00000025716	Lsm10	99	70.248	ENSTGUG00000001600	-	99	70.248	Taeniopygia_guttata
ENSRNOG00000025716	Lsm10	95	66.379	ENSTRUG00000010531	oscp1a	94	66.379	Takifugu_rubripes
ENSRNOG00000025716	Lsm10	98	95.000	ENSTBEG00000016674	LSM10	98	95.000	Tupaia_belangeri
ENSRNOG00000025716	Lsm10	99	92.562	ENSUAMG00000020265	LSM10	98	92.562	Ursus_americanus
ENSRNOG00000025716	Lsm10	99	92.562	ENSUMAG00000001438	LSM10	56	92.562	Ursus_maritimus
ENSRNOG00000025716	Lsm10	99	95.041	ENSVVUG00000023209	LSM10	98	95.041	Vulpes_vulpes
ENSRNOG00000025716	Lsm10	100	68.852	ENSXETG00000027631	lsm10	99	68.852	Xenopus_tropicalis
ENSRNOG00000025716	Lsm10	96	63.248	ENSXCOG00000018776	oscp1a	74	63.248	Xiphophorus_couchianus
ENSRNOG00000025716	Lsm10	96	62.500	ENSXMAG00000019963	oscp1a	96	62.500	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005683	U7 snRNP	-	IEA	Component
GO:0005683	U7 snRNP	-	ISO	Component
GO:0015030	Cajal body	-	IEA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0071208	histone pre-mRNA DCP binding	-	IEA	Function
GO:0071208	histone pre-mRNA DCP binding	-	ISO	Function
GO:0071209	U7 snRNA binding	-	IEA	Function
GO:0071209	U7 snRNA binding	-	ISO	Function
GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	-	IEA	Process
GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	-	ISO	Process