EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000025799 (Gene tree)
Gene ID: 292948
Gene Symbol: RGD1560303
Alias: LOC292948
Full Name: similar to hypothetical protein 4933423E17
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 1874 bases
Position: chr1:14115148-14117021
Accession: 1560303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000004344	RIO1	PF01163.22	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000004344	-	1874	XM_218667	ENSRNOP00000004344	494 (aa)	XP_001072561	D4A949

Gene Model

Click here to download ENSRNOG00000025799's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000025799's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000025799	RGD1560303	99	43.307	ENSRNOG00000024200	LOC690235	97	43.408
ENSRNOG00000025799	RGD1560303	51	40.476	ENSRNOG00000051596	AABR07056131.1	91	40.476
ENSRNOG00000025799	RGD1560303	99	41.815	ENSRNOG00000059551	RGD1560718	98	42.394
ENSRNOG00000025799	RGD1560303	99	39.417	ENSRNOG00000030145	RGD1561667	95	39.919
ENSRNOG00000025799	RGD1560303	54	34.091	ENSRNOG00000004362	Rps6ka5	66	34.091
ENSRNOG00000025799	RGD1560303	96	41.379	ENSRNOG00000052093	Smok2a	98	41.379
ENSRNOG00000025799	RGD1560303	51	40.476	ENSRNOG00000048230	AABR07056118.1	91	40.476
ENSRNOG00000025799	RGD1560303	53	37.786	ENSRNOG00000028913	AABR07028872.1	84	37.786
ENSRNOG00000025799	RGD1560303	52	30.545	ENSRNOG00000017332	Dapk2	75	30.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000025799	RGD1560303	53	42.007	ENSBTAG00000052622	-	84	42.007	Bos_taurus
ENSRNOG00000025799	RGD1560303	62	40.193	ENSCPOG00000034310	-	94	40.193	Cavia_porcellus
ENSRNOG00000025799	RGD1560303	64	39.308	ENSCPOG00000033321	-	52	39.308	Cavia_porcellus
ENSRNOG00000025799	RGD1560303	58	38.488	ENSCING00000008201	-	88	38.488	Ciona_intestinalis
ENSRNOG00000025799	RGD1560303	94	48.203	ENSCGRG00001007918	-	97	48.203	Cricetulus_griseus_chok1gshd
ENSRNOG00000025799	RGD1560303	95	46.541	ENSCGRG00001010553	-	97	46.458	Cricetulus_griseus_chok1gshd
ENSRNOG00000025799	RGD1560303	99	66.600	ENSCGRG00001006023	Gm4922	97	67.641	Cricetulus_griseus_chok1gshd
ENSRNOG00000025799	RGD1560303	99	66.600	ENSCGRG00000009530	Gm4922	97	67.641	Cricetulus_griseus_crigri
ENSRNOG00000025799	RGD1560303	92	34.672	ENSFDAG00000016208	-	95	34.672	Fukomys_damarensis
ENSRNOG00000025799	RGD1560303	94	41.068	MGP_CAROLIEiJ_G0021082	-	99	41.529	Mus_caroli
ENSRNOG00000025799	RGD1560303	94	41.068	MGP_CAROLIEiJ_G0021080	-	99	41.529	Mus_caroli
ENSRNOG00000025799	RGD1560303	94	41.068	MGP_CAROLIEiJ_G0021081	-	99	41.529	Mus_caroli
ENSRNOG00000025799	RGD1560303	94	41.068	MGP_CAROLIEiJ_G0021079	-	99	41.529	Mus_caroli
ENSRNOG00000025799	RGD1560303	97	72.895	MGP_CAROLIEiJ_G0015144	Gm4922	95	73.036	Mus_caroli
ENSRNOG00000025799	RGD1560303	99	72.345	ENSMUSG00000044624	Gm4922	97	72.464	Mus_musculus
ENSRNOG00000025799	RGD1560303	91	42.644	ENSMUSG00000073457	Smok2b	96	42.827	Mus_musculus
ENSRNOG00000025799	RGD1560303	99	41.420	ENSMUSG00000073458	Smok2a	98	41.785	Mus_musculus
ENSRNOG00000025799	RGD1560303	90	42.208	ENSMUSG00000079156	Smok3b	91	42.208	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	39.300	ENSMUSG00000101436	Gm5157	85	39.300	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	39.689	ENSMUSG00000096283	Gm6176	85	39.689	Mus_musculus
ENSRNOG00000025799	RGD1560303	93	41.286	ENSMUSG00000101361	Gm7356	95	41.736	Mus_musculus
ENSRNOG00000025799	RGD1560303	93	40.166	ENSMUSG00000067941	Gm7168	95	40.619	Mus_musculus
ENSRNOG00000025799	RGD1560303	93	41.494	ENSMUSG00000101307	Gm7358	95	41.942	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	39.689	ENSMUSG00000109396	Gm4565	85	39.689	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	39.689	ENSMUSG00000109060	Gm4513	85	39.689	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	39.300	ENSMUSG00000095683	Gm10662	82	39.300	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	39.300	ENSMUSG00000095976	Gm5891	82	39.300	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	40.078	ENSMUSG00000095190	Gm10668	85	40.078	Mus_musculus
ENSRNOG00000025799	RGD1560303	91	42.151	ENSMUSG00000075598	Smok3c	92	42.151	Mus_musculus
ENSRNOG00000025799	RGD1560303	90	42.208	ENSMUSG00000075599	Smok3a	91	42.208	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	39.300	ENSMUSG00000109516	Gm6882	82	39.300	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	40.078	ENSMUSG00000095363	Gm4567	85	40.078	Mus_musculus
ENSRNOG00000025799	RGD1560303	52	40.078	ENSMUSG00000094682	Gm6902	85	40.078	Mus_musculus
ENSRNOG00000025799	RGD1560303	96	70.686	MGP_PahariEiJ_G0023763	Gm4922	97	70.686	Mus_pahari
ENSRNOG00000025799	RGD1560303	99	72.435	MGP_SPRETEiJ_G0015952	Gm4922	97	72.557	Mus_spretus
ENSRNOG00000025799	RGD1560303	99	42.718	ENSNGAG00000008026	-	96	42.944	Nannospalax_galili
ENSRNOG00000025799	RGD1560303	50	41.767	ENSOGAG00000033945	-	91	41.767	Otolemur_garnettii
ENSRNOG00000025799	RGD1560303	93	46.042	ENSPEMG00000022024	-	92	51.630	Peromyscus_maniculatus_bairdii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004674	protein serine/threonine kinase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006468	protein phosphorylation	21873635.	IBA	Process
GO:0035556	intracellular signal transduction	21873635.	IBA	Process