EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000025881 (Gene tree)
Gene ID
680726
Gene Symbol
Rbms3
Alias
LOC680726
Full Name
RNA binding motif%2C single stranded interacting protein 3
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
984060 bases
Position
chr8:124661839-125645898
Accession
1588240
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000039967RRM_1PF00076.227.4e-3212
ENSRNOP00000039967RRM_1PF00076.227.4e-3222
ENSRNOP00000037094RRM_1PF00076.228.5e-3212
ENSRNOP00000037094RRM_1PF00076.228.5e-3222
ENSRNOP00000041726RRM_1PF00076.229.4e-3212
ENSRNOP00000041726RRM_1PF00076.229.4e-3222
ENSRNOP00000029127RRM_1PF00076.221e-3112
ENSRNOP00000029127RRM_1PF00076.221e-3122
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000036642-1242XM_001061329ENSRNOP00000037094414 (aa)XP_001061329F1M2F1
ENSRNOT00000036672-1332-ENSRNOP00000029127444 (aa)-F1LVI3
ENSRNOT00000039904-1290XM_006244038ENSRNOP00000041726430 (aa)XP_006244100F1LYR6
ENSRNOT00000041548-1194-ENSRNOP00000039967398 (aa)-F1LU19
Gene Model
Click here to download ENSRNOG00000025881's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000025881's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000025881Rbms39267.089ENSRNOG00000003076Rbms28867.200
ENSRNOG00000025881Rbms35236.073ENSRNOG00000006853Elavl26938.251
ENSRNOG00000025881Rbms37138.961ENSRNOG00000020875Celf38940.278
ENSRNOG00000025881Rbms39971.190ENSRNOG00000008482Rbms18474.041
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000025881Rbms310094.048ENSG00000144642RBMS310096.212Homo_sapiens
ENSRNOG00000025881Rbms39975.061ENSAPOG00000007266rbms39575.061Acanthochromis_polyacanthus
ENSRNOG00000025881Rbms39986.506ENSAPOG00000003432-9986.506Acanthochromis_polyacanthus
ENSRNOG00000025881Rbms37093.729ENSAMEG00000005947RBMS310093.729Ailuropoda_melanoleuca
ENSRNOG00000025881Rbms38872.358ENSACIG00000021113RBMS39671.274Amphilophus_citrinellus
ENSRNOG00000025881Rbms38284.663ENSACIG00000006987-8190.203Amphilophus_citrinellus
ENSRNOG00000025881Rbms310078.089ENSAOCG00000021274rbms310076.923Amphiprion_ocellaris
ENSRNOG00000025881Rbms39981.236ENSAOCG00000024104-9981.336Amphiprion_ocellaris
ENSRNOG00000025881Rbms39981.752ENSAPEG00000009481-9981.752Amphiprion_percula
ENSRNOG00000025881Rbms38975.881ENSAPEG00000016299rbms38683.436Amphiprion_percula
ENSRNOG00000025881Rbms310078.689ENSATEG00000024295rbms310077.752Anabas_testudineus
ENSRNOG00000025881Rbms39986.265ENSATEG00000008433-9986.265Anabas_testudineus
ENSRNOG00000025881Rbms39988.399ENSAPLG00000012270RBMS310087.703Anas_platyrhynchos
ENSRNOG00000025881Rbms310090.215ENSACAG00000028664RBMS39989.021Anolis_carolinensis
ENSRNOG00000025881Rbms310094.037ENSANAG00000021899RBMS39992.202Aotus_nancymaae
ENSRNOG00000025881Rbms310078.169ENSACLG00000018506rbms310077.230Astatotilapia_calliptera
ENSRNOG00000025881Rbms39981.507ENSACLG00000008976-9481.507Astatotilapia_calliptera
ENSRNOG00000025881Rbms36583.012ENSAMXG00000043770-10083.012Astyanax_mexicanus
ENSRNOG00000025881Rbms310084.689ENSAMXG00000020388rbms310084.689Astyanax_mexicanus
ENSRNOG00000025881Rbms310093.578ENSBTAG00000044062RBMS310091.514Bos_taurus
ENSRNOG00000025881Rbms310094.037ENSCJAG00000004312RBMS39991.972Callithrix_jacchus
ENSRNOG00000025881Rbms310094.037ENSCAFG00000005464RBMS39992.202Canis_familiaris
ENSRNOG00000025881Rbms310094.037ENSCAFG00020024980RBMS310092.202Canis_lupus_dingo
ENSRNOG00000025881Rbms310093.578ENSCHIG00000009144RBMS39991.514Capra_hircus
ENSRNOG00000025881Rbms37794.294ENSTSYG00000002615RBMS39994.937Carlito_syrichta
ENSRNOG00000025881Rbms39984.944ENSCAPG00000017783RBMS310084.944Cavia_aperea
ENSRNOG00000025881Rbms310094.940ENSCPOG00000006457RBMS39994.940Cavia_porcellus
ENSRNOG00000025881Rbms310094.037ENSCCAG00000008671RBMS39991.972Cebus_capucinus
ENSRNOG00000025881Rbms310094.037ENSCATG00000013222RBMS39991.972Cercocebus_atys
ENSRNOG00000025881Rbms310094.048ENSCLAG00000005866RBMS39992.202Chinchilla_lanigera
ENSRNOG00000025881Rbms36593.333ENSCSAG00000009655RBMS39993.333Chlorocebus_sabaeus
ENSRNOG00000025881Rbms38896.000ENSCHOG00000000758RBMS38194.901Choloepus_hoffmanni
ENSRNOG00000025881Rbms310091.169ENSCPBG00000022678RBMS39989.976Chrysemys_picta_bellii
ENSRNOG00000025881Rbms310094.266ENSCANG00000032137RBMS39992.202Colobus_angolensis_palliatus
ENSRNOG00000025881Rbms310098.837ENSCGRG00001007243Rbms39998.837Cricetulus_griseus_chok1gshd
ENSRNOG00000025881Rbms310098.837ENSCGRG00000004599Rbms39998.837Cricetulus_griseus_crigri
ENSRNOG00000025881Rbms310077.804ENSCSEG00000010011RBMS310077.570Cynoglossus_semilaevis
ENSRNOG00000025881Rbms310085.646ENSCSEG00000014677-9591.393Cynoglossus_semilaevis
ENSRNOG00000025881Rbms39983.413ENSCVAG00000022814-9985.817Cyprinodon_variegatus
ENSRNOG00000025881Rbms310078.960ENSCVAG00000022354rbms310077.778Cyprinodon_variegatus
ENSRNOG00000025881Rbms310086.779ENSDARG00000044574rbms39097.674Danio_rerio
ENSRNOG00000025881Rbms310094.495ENSDNOG00000016645RBMS39992.431Dasypus_novemcinctus
ENSRNOG00000025881Rbms310093.349ENSDORG00000007220Rbms39991.514Dipodomys_ordii
ENSRNOG00000025881Rbms38791.667ENSETEG00000009485-8173.864Echinops_telfairi
ENSRNOG00000025881Rbms37054.804ENSEBUG00000005830rbms38357.198Eptatretus_burgeri
ENSRNOG00000025881Rbms310094.048ENSEASG00005006152RBMS39991.905Equus_asinus_asinus
ENSRNOG00000025881Rbms310094.048ENSECAG00000017871RBMS39991.972Equus_caballus
ENSRNOG00000025881Rbms39787.023ENSEEUG00000014337RBMS310084.733Erinaceus_europaeus
ENSRNOG00000025881Rbms310077.700ENSELUG00000002862rbms310077.230Esox_lucius
ENSRNOG00000025881Rbms39784.655ENSELUG00000006905-9891.803Esox_lucius
ENSRNOG00000025881Rbms310093.578ENSFCAG00000002130RBMS39991.743Felis_catus
ENSRNOG00000025881Rbms310091.408ENSFALG00000009165RBMS39990.215Ficedula_albicollis
ENSRNOG00000025881Rbms310093.578ENSFDAG00000008278RBMS39991.743Fukomys_damarensis
ENSRNOG00000025881Rbms39567.830ENSFHEG00000004787RBMS39570.461Fundulus_heteroclitus
ENSRNOG00000025881Rbms39079.093ENSGMOG00000002600-9380.155Gadus_morhua
ENSRNOG00000025881Rbms310091.408ENSGALG00000011439RBMS39990.215Gallus_gallus
ENSRNOG00000025881Rbms310079.009ENSGAFG00000000168rbms310075.943Gambusia_affinis
ENSRNOG00000025881Rbms39986.298ENSGAFG00000003329-9986.298Gambusia_affinis
ENSRNOG00000025881Rbms36589.668ENSGAGG00000004039RBMS310089.668Gopherus_agassizii
ENSRNOG00000025881Rbms310094.037ENSGGOG00000007228RBMS39991.972Gorilla_gorilla
ENSRNOG00000025881Rbms310084.174ENSHBUG00000019785-9684.174Haplochromis_burtoni
ENSRNOG00000025881Rbms36683.704ENSHBUG00000021196rbms39483.704Haplochromis_burtoni
ENSRNOG00000025881Rbms310094.286ENSHGLG00000002170RBMS39992.431Heterocephalus_glaber_female
ENSRNOG00000025881Rbms310094.286ENSHGLG00100014278RBMS39992.431Heterocephalus_glaber_male
ENSRNOG00000025881Rbms39985.817ENSHCOG00000007894-9985.817Hippocampus_comes
ENSRNOG00000025881Rbms310085.167ENSIPUG00000017680rbms310085.167Ictalurus_punctatus
ENSRNOG00000025881Rbms310094.048ENSSTOG00000006324RBMS39992.202Ictidomys_tridecemlineatus
ENSRNOG00000025881Rbms310091.724ENSJJAG00000014708Rbms39990.805Jaculus_jaculus
ENSRNOG00000025881Rbms310077.442ENSKMAG00000020500rbms310077.442Kryptolebias_marmoratus
ENSRNOG00000025881Rbms39986.265ENSKMAG00000012586-9986.265Kryptolebias_marmoratus
ENSRNOG00000025881Rbms39985.749ENSLBEG00000027388-9985.749Labrus_bergylta
ENSRNOG00000025881Rbms36667.143ENSLBEG00000006677rbms39671.815Labrus_bergylta
ENSRNOG00000025881Rbms310090.431ENSLACG00000010581RBMS310088.517Latimeria_chalumnae
ENSRNOG00000025881Rbms37085.666ENSLOCG00000002328rbms310085.666Lepisosteus_oculatus
ENSRNOG00000025881Rbms310093.807ENSLAFG00000000354RBMS310091.972Loxodonta_africana
ENSRNOG00000025881Rbms310094.286ENSMFAG00000033300RBMS39992.202Macaca_fascicularis
ENSRNOG00000025881Rbms310094.286ENSMMUG00000004404RBMS39992.143Macaca_mulatta
ENSRNOG00000025881Rbms310094.266ENSMNEG00000035839RBMS39992.202Macaca_nemestrina
ENSRNOG00000025881Rbms310094.037ENSMLEG00000029464RBMS39991.972Mandrillus_leucophaeus
ENSRNOG00000025881Rbms310078.972ENSMAMG00000024043rbms310078.037Mastacembelus_armatus
ENSRNOG00000025881Rbms39784.910ENSMAMG00000002176-8388.533Mastacembelus_armatus
ENSRNOG00000025881Rbms310078.169ENSMZEG00005006308rbms310077.230Maylandia_zebra
ENSRNOG00000025881Rbms310084.223ENSMZEG00005026469-9684.332Maylandia_zebra
ENSRNOG00000025881Rbms310098.837ENSMAUG00000016436Rbms39998.837Mesocricetus_auratus
ENSRNOG00000025881Rbms310093.807ENSMICG00000049249RBMS39991.743Microcebus_murinus
ENSRNOG00000025881Rbms310097.674ENSMOCG00000006997Rbms39997.674Microtus_ochrogaster
ENSRNOG00000025881Rbms39986.375ENSMMOG00000015071-9986.375Mola_mola
ENSRNOG00000025881Rbms39076.630ENSMMOG00000008471RBMS38884.356Mola_mola
ENSRNOG00000025881Rbms310083.184ENSMODG00000015125RBMS39982.960Monodelphis_domestica
ENSRNOG00000025881Rbms310078.505ENSMALG00000019536RBMS38680.488Monopterus_albus
ENSRNOG00000025881Rbms39986.265ENSMALG00000009155-9986.265Monopterus_albus
ENSRNOG00000025881Rbms310098.140MGP_CAROLIEiJ_G0032783Rbms310097.585Mus_caroli
ENSRNOG00000025881Rbms310098.837ENSMUSG00000039607Rbms310099.034Mus_musculus
ENSRNOG00000025881Rbms310098.608MGP_PahariEiJ_G0015650Rbms310099.034Mus_pahari
ENSRNOG00000025881Rbms310098.837MGP_SPRETEiJ_G0033930Rbms310099.034Mus_spretus
ENSRNOG00000025881Rbms310094.266ENSMPUG00000011956RBMS310092.431Mustela_putorius_furo
ENSRNOG00000025881Rbms310093.810ENSMLUG00000000659RBMS310091.905Myotis_lucifugus
ENSRNOG00000025881Rbms310096.759ENSNGAG00000014039Rbms39996.759Nannospalax_galili
ENSRNOG00000025881Rbms39986.506ENSNBRG00000018065-9986.506Neolamprologus_brichardi
ENSRNOG00000025881Rbms310094.037ENSNLEG00000004129RBMS39991.972Nomascus_leucogenys
ENSRNOG00000025881Rbms39981.422ENSMEUG00000004772RBMS310079.128Notamacropus_eugenii
ENSRNOG00000025881Rbms39993.793ENSOPRG00000006808RBMS38591.724Ochotona_princeps
ENSRNOG00000025881Rbms310094.048ENSODEG00000003651RBMS39992.202Octodon_degus
ENSRNOG00000025881Rbms310073.585ENSONIG00000007172rbms310070.991Oreochromis_niloticus
ENSRNOG00000025881Rbms310088.991ENSOANG00000010529RBMS39986.927Ornithorhynchus_anatinus
ENSRNOG00000025881Rbms310093.349ENSOCUG00000004840RBMS39991.055Oryctolagus_cuniculus
ENSRNOG00000025881Rbms310078.723ENSORLG00000005370RBMS310072.769Oryzias_latipes
ENSRNOG00000025881Rbms39986.747ENSORLG00000002306-9986.747Oryzias_latipes
ENSRNOG00000025881Rbms39986.506ENSORLG00020008496-9986.506Oryzias_latipes_hni
ENSRNOG00000025881Rbms310078.251ENSORLG00020022674RBMS310072.311Oryzias_latipes_hni
ENSRNOG00000025881Rbms310078.960ENSORLG00015005509rbms310075.414Oryzias_latipes_hsok
ENSRNOG00000025881Rbms39986.506ENSORLG00015015719-9986.506Oryzias_latipes_hsok
ENSRNOG00000025881Rbms310079.433ENSOMEG00000014805RBMS310075.887Oryzias_melastigma
ENSRNOG00000025881Rbms39186.614ENSOMEG00000007677-9587.397Oryzias_melastigma
ENSRNOG00000025881Rbms310094.037ENSOARG00000014684RBMS39991.972Ovis_aries
ENSRNOG00000025881Rbms310094.037ENSPPAG00000036519RBMS39991.972Pan_paniscus
ENSRNOG00000025881Rbms310093.349ENSPPRG00000002761RBMS39991.972Panthera_pardus
ENSRNOG00000025881Rbms310093.349ENSPTIG00000011568RBMS310091.972Panthera_tigris_altaica
ENSRNOG00000025881Rbms310094.048ENSPTRG00000014709RBMS39991.972Pan_troglodytes
ENSRNOG00000025881Rbms310094.037ENSPANG00000010234RBMS310089.145Papio_anubis
ENSRNOG00000025881Rbms36588.031ENSPKIG00000007989-10088.031Paramormyrops_kingsleyae
ENSRNOG00000025881Rbms35393.333ENSPKIG00000016025-7493.333Paramormyrops_kingsleyae
ENSRNOG00000025881Rbms310090.692ENSPSIG00000005269RBMS39989.499Pelodiscus_sinensis
ENSRNOG00000025881Rbms39187.402ENSPMGG00000021683-9687.978Periophthalmus_magnuspinnatus
ENSRNOG00000025881Rbms38975.890ENSPMGG00000021544rbms38582.515Periophthalmus_magnuspinnatus
ENSRNOG00000025881Rbms39995.105ENSPEMG00000001117Rbms310095.105Peromyscus_maniculatus_bairdii
ENSRNOG00000025881Rbms38791.243ENSPCIG00000006106RBMS39093.981Phascolarctos_cinereus
ENSRNOG00000025881Rbms310078.774ENSPFOG00000017887rbms310075.708Poecilia_formosa
ENSRNOG00000025881Rbms37779.439ENSPLAG00000016866-8378.193Poecilia_latipinna
ENSRNOG00000025881Rbms39986.538ENSPMEG00000002993-9986.538Poecilia_mexicana
ENSRNOG00000025881Rbms38986.400ENSPREG00000018221-9888.281Poecilia_reticulata
ENSRNOG00000025881Rbms39977.619ENSPREG00000011880rbms39976.429Poecilia_reticulata
ENSRNOG00000025881Rbms310080.505ENSPPYG00000014050RBMS38278.440Pongo_abelii
ENSRNOG00000025881Rbms310070.183ENSPCAG00000006307RBMS39968.807Procavia_capensis
ENSRNOG00000025881Rbms39993.793ENSPCOG00000017136RBMS310091.724Propithecus_coquereli
ENSRNOG00000025881Rbms310083.716ENSPVAG00000014037RBMS38394.199Pteropus_vampyrus
ENSRNOG00000025881Rbms39986.747ENSPNYG00000012624-9986.747Pundamilia_nyererei
ENSRNOG00000025881Rbms310078.169ENSPNYG00000010546rbms310077.230Pundamilia_nyererei
ENSRNOG00000025881Rbms310085.167ENSPNAG00000001800rbms310085.167Pygocentrus_nattereri
ENSRNOG00000025881Rbms310094.266ENSRBIG00000035863RBMS39992.202Rhinopithecus_bieti
ENSRNOG00000025881Rbms38995.288ENSRROG00000027512RBMS39395.890Rhinopithecus_roxellana
ENSRNOG00000025881Rbms310094.037ENSSBOG00000020232RBMS39991.972Saimiri_boliviensis_boliviensis
ENSRNOG00000025881Rbms38886.027ENSSHAG00000002411RBMS39486.027Sarcophilus_harrisii
ENSRNOG00000025881Rbms39985.714ENSSFOG00015008578rbms39985.230Scleropages_formosus
ENSRNOG00000025881Rbms39784.655ENSSMAG00000020065-9388.267Scophthalmus_maximus
ENSRNOG00000025881Rbms310074.592ENSSMAG00000004997rbms39977.778Scophthalmus_maximus
ENSRNOG00000025881Rbms310078.505ENSSDUG00000013656RBMS310077.570Seriola_dumerili
ENSRNOG00000025881Rbms39986.506ENSSDUG00000019287-9986.506Seriola_dumerili
ENSRNOG00000025881Rbms310078.190ENSSLDG00000020276RBMS310077.262Seriola_lalandi_dorsalis
ENSRNOG00000025881Rbms39986.506ENSSLDG00000013224-9986.506Seriola_lalandi_dorsalis
ENSRNOG00000025881Rbms39182.337ENSSARG00000000695RBMS310082.337Sorex_araneus
ENSRNOG00000025881Rbms36988.699ENSSPUG00000017197RBMS39887.542Sphenodon_punctatus
ENSRNOG00000025881Rbms39980.645ENSSPAG00000003983-9980.645Stegastes_partitus
ENSRNOG00000025881Rbms310077.622ENSSPAG00000020693rbms310076.923Stegastes_partitus
ENSRNOG00000025881Rbms310093.578ENSSSCG00000036381RBMS39991.514Sus_scrofa
ENSRNOG00000025881Rbms37788.323ENSTGUG00000003572RBMS310088.323Taeniopygia_guttata
ENSRNOG00000025881Rbms39977.143ENSTRUG00000007482-8982.778Takifugu_rubripes
ENSRNOG00000025881Rbms310078.037ENSTRUG00000021719RBMS310077.336Takifugu_rubripes
ENSRNOG00000025881Rbms38591.445ENSTBEG00000005362RBMS39291.445Tupaia_belangeri
ENSRNOG00000025881Rbms39993.333ENSTTRG00000006202RBMS310091.264Tursiops_truncatus
ENSRNOG00000025881Rbms310094.037ENSUMAG00000000263RBMS39992.202Ursus_maritimus
ENSRNOG00000025881Rbms38984.031ENSVPAG00000003842RBMS39382.723Vicugna_pacos
ENSRNOG00000025881Rbms38995.026ENSVVUG00000004660RBMS39996.087Vulpes_vulpes
ENSRNOG00000025881Rbms37183.388ENSXETG00000032055RBMS39983.388Xenopus_tropicalis
ENSRNOG00000025881Rbms39172.165ENSXCOG00000019600-9572.118Xiphophorus_couchianus
ENSRNOG00000025881Rbms39986.298ENSXMAG00000014382-9986.298Xiphophorus_maculatus
ENSRNOG00000025881Rbms310077.412ENSXMAG00000021783rbms310076.235Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002357defense response to tumor cell-IEAProcess
GO:0002357defense response to tumor cell-ISOProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol21873635.IBAComponent
GO:0008143poly(A) binding21873635.IBAFunction
GO:0008143poly(A) binding-ISOFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0008266poly(U) RNA binding-ISOFunction
GO:0010628positive regulation of gene expression-ISOProcess
GO:0010629negative regulation of gene expression-IEAProcess
GO:0010629negative regulation of gene expression-ISOProcess
GO:0035925mRNA 3'-UTR AU-rich region binding-IEAFunction
GO:0035925mRNA 3'-UTR AU-rich region binding-ISOFunction
GO:0045727positive regulation of translation-IEAProcess
GO:0045727positive regulation of translation-ISOProcess
GO:0090090negative regulation of canonical Wnt signaling pathway-IEAProcess
GO:0090090negative regulation of canonical Wnt signaling pathway-ISOProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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