EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000026277 (Gene tree)
Gene ID: 311415
Gene Symbol: Zc3h6
Alias: LOC311415|Zc3hdc6
Full Name: zinc finger CCCH type containing 6
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 52239 bases
Position: chr3:121499195-121551433
Accession: 1311061
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000024322	zf-CCCH	PF00642.24	1.6e-11	1	2
ENSRNOP00000024322	zf-CCCH	PF00642.24	1.6e-11	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000024322	-	5324	XM_006234999	ENSRNOP00000024322	1180 (aa)	XP_006235061	F1LTU5

Gene Model

Click here to download ENSRNOG00000026277's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000026277's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000026277	Zc3h6	58	50.000	ENSRNOG00000015229	Zc3h4	69	38.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000026277	Zc3h6	100	76.574	ENSG00000188177	ZC3H6	100	76.826	Homo_sapiens
ENSRNOG00000026277	Zc3h6	61	67.188	ENSAPOG00000002681	zc3h6	90	43.705	Acanthochromis_polyacanthus
ENSRNOG00000026277	Zc3h6	100	73.300	ENSAMEG00000016194	ZC3H6	100	73.720	Ailuropoda_melanoleuca
ENSRNOG00000026277	Zc3h6	66	66.839	ENSACIG00000021843	zc3h6	73	66.839	Amphilophus_citrinellus
ENSRNOG00000026277	Zc3h6	61	67.188	ENSAOCG00000004039	zc3h6	90	43.942	Amphiprion_ocellaris
ENSRNOG00000026277	Zc3h6	61	67.188	ENSAPEG00000014561	zc3h6	90	43.580	Amphiprion_percula
ENSRNOG00000026277	Zc3h6	79	40.530	ENSATEG00000019063	zc3h6	90	43.219	Anabas_testudineus
ENSRNOG00000026277	Zc3h6	99	56.152	ENSAPLG00000014287	ZC3H6	99	57.344	Anas_platyrhynchos
ENSRNOG00000026277	Zc3h6	100	76.342	ENSANAG00000024229	ZC3H6	100	76.594	Aotus_nancymaae
ENSRNOG00000026277	Zc3h6	100	76.426	ENSCJAG00000016479	ZC3H6	100	76.678	Callithrix_jacchus
ENSRNOG00000026277	Zc3h6	100	73.928	ENSCAFG00000007160	ZC3H6	100	74.012	Canis_familiaris
ENSRNOG00000026277	Zc3h6	100	72.246	ENSCAFG00020017525	ZC3H6	100	72.330	Canis_lupus_dingo
ENSRNOG00000026277	Zc3h6	80	71.474	ENSCHIG00000019719	-	96	71.474	Capra_hircus
ENSRNOG00000026277	Zc3h6	100	76.742	ENSTSYG00000031857	ZC3H6	100	76.994	Carlito_syrichta
ENSRNOG00000026277	Zc3h6	99	71.003	ENSCPOG00000003445	ZC3H6	100	72.109	Cavia_porcellus
ENSRNOG00000026277	Zc3h6	100	76.826	ENSCATG00000036595	ZC3H6	100	77.078	Cercocebus_atys
ENSRNOG00000026277	Zc3h6	90	75.234	ENSCLAG00000006605	ZC3H6	99	75.327	Chinchilla_lanigera
ENSRNOG00000026277	Zc3h6	90	76.449	ENSCSAG00000016793	ZC3H6	99	76.449	Chlorocebus_sabaeus
ENSRNOG00000026277	Zc3h6	99	76.695	ENSCANG00000041036	ZC3H6	100	76.949	Colobus_angolensis_palliatus
ENSRNOG00000026277	Zc3h6	99	81.718	ENSCGRG00001022022	Zc3h6	99	81.903	Cricetulus_griseus_chok1gshd
ENSRNOG00000026277	Zc3h6	99	85.128	ENSCGRG00000016162	Zc3h6	100	85.385	Cricetulus_griseus_crigri
ENSRNOG00000026277	Zc3h6	67	56.439	ENSCSEG00000012267	zc3h6	81	55.472	Cynoglossus_semilaevis
ENSRNOG00000026277	Zc3h6	99	67.401	ENSDNOG00000044811	ZC3H6	100	67.316	Dasypus_novemcinctus
ENSRNOG00000026277	Zc3h6	99	74.533	ENSDORG00000013967	Zc3h6	100	74.533	Dipodomys_ordii
ENSRNOG00000026277	Zc3h6	83	75.355	ENSEASG00005006493	ZC3H6	99	75.355	Equus_asinus_asinus
ENSRNOG00000026277	Zc3h6	100	75.567	ENSECAG00000023620	ZC3H6	100	75.819	Equus_caballus
ENSRNOG00000026277	Zc3h6	77	87.179	ENSEEUG00000013883	-	85	67.100	Erinaceus_europaeus
ENSRNOG00000026277	Zc3h6	100	73.950	ENSFCAG00000008089	ZC3H6	100	74.202	Felis_catus
ENSRNOG00000026277	Zc3h6	99	56.797	ENSFALG00000011589	ZC3H6	99	57.381	Ficedula_albicollis
ENSRNOG00000026277	Zc3h6	99	75.127	ENSFDAG00000002521	ZC3H6	99	75.552	Fukomys_damarensis
ENSRNOG00000026277	Zc3h6	99	56.647	ENSGALG00000008269	ZC3H6	98	57.638	Gallus_gallus
ENSRNOG00000026277	Zc3h6	61	61.140	ENSGAFG00000006771	zc3h6	77	61.140	Gambusia_affinis
ENSRNOG00000026277	Zc3h6	61	65.104	ENSGACG00000005343	zc3h6	96	42.535	Gasterosteus_aculeatus
ENSRNOG00000026277	Zc3h6	99	58.809	ENSGAGG00000010857	ZC3H6	99	59.550	Gopherus_agassizii
ENSRNOG00000026277	Zc3h6	100	76.826	ENSGGOG00000001665	ZC3H6	100	77.078	Gorilla_gorilla
ENSRNOG00000026277	Zc3h6	99	74.809	ENSHGLG00000011882	ZC3H6	96	75.318	Heterocephalus_glaber_female
ENSRNOG00000026277	Zc3h6	99	72.959	ENSHGLG00100002559	ZC3H6	100	73.384	Heterocephalus_glaber_male
ENSRNOG00000026277	Zc3h6	64	65.174	ENSHCOG00000012519	zc3h6	89	46.383	Hippocampus_comes
ENSRNOG00000026277	Zc3h6	90	74.977	ENSSTOG00000008120	-	99	75.070	Ictidomys_tridecemlineatus
ENSRNOG00000026277	Zc3h6	100	76.684	ENSJJAG00000013206	Zc3h6	100	76.852	Jaculus_jaculus
ENSRNOG00000026277	Zc3h6	61	65.104	ENSKMAG00000016252	zc3h6	85	46.610	Kryptolebias_marmoratus
ENSRNOG00000026277	Zc3h6	58	64.767	ENSLBEG00000003054	zc3h6	92	39.326	Labrus_bergylta
ENSRNOG00000026277	Zc3h6	99	45.847	ENSLACG00000012014	ZC3H6	100	46.283	Latimeria_chalumnae
ENSRNOG00000026277	Zc3h6	100	42.373	ENSLOCG00000016548	zc3h6	98	43.265	Lepisosteus_oculatus
ENSRNOG00000026277	Zc3h6	93	70.936	ENSLAFG00000001151	ZC3H6	100	70.304	Loxodonta_africana
ENSRNOG00000026277	Zc3h6	100	76.994	ENSMFAG00000036963	ZC3H6	100	77.246	Macaca_fascicularis
ENSRNOG00000026277	Zc3h6	100	76.994	ENSMMUG00000016430	ZC3H6	100	77.246	Macaca_mulatta
ENSRNOG00000026277	Zc3h6	100	76.742	ENSMNEG00000031225	ZC3H6	100	77.078	Macaca_nemestrina
ENSRNOG00000026277	Zc3h6	100	76.910	ENSMLEG00000038821	ZC3H6	100	77.162	Mandrillus_leucophaeus
ENSRNOG00000026277	Zc3h6	67	56.226	ENSMAMG00000021546	zc3h6	90	42.806	Mastacembelus_armatus
ENSRNOG00000026277	Zc3h6	99	56.529	ENSMGAG00000003025	ZC3H6	99	57.521	Meleagris_gallopavo
ENSRNOG00000026277	Zc3h6	100	84.589	ENSMAUG00000017009	Zc3h6	100	85.013	Mesocricetus_auratus
ENSRNOG00000026277	Zc3h6	100	77.330	ENSMICG00000036353	ZC3H6	100	77.078	Microcebus_murinus
ENSRNOG00000026277	Zc3h6	100	84.010	ENSMOCG00000002054	Zc3h6	100	83.672	Microtus_ochrogaster
ENSRNOG00000026277	Zc3h6	99	60.870	ENSMODG00000006612	ZC3H6	100	60.902	Monodelphis_domestica
ENSRNOG00000026277	Zc3h6	67	55.147	ENSMALG00000002048	zc3h6	98	39.138	Monopterus_albus
ENSRNOG00000026277	Zc3h6	100	89.331	MGP_CAROLIEiJ_G0024278	Zc3h6	100	89.585	Mus_caroli
ENSRNOG00000026277	Zc3h6	100	90.771	ENSMUSG00000042851	Zc3h6	100	91.363	Mus_musculus
ENSRNOG00000026277	Zc3h6	100	90.432	MGP_PahariEiJ_G0025723	Zc3h6	100	90.855	Mus_pahari
ENSRNOG00000026277	Zc3h6	100	91.025	MGP_SPRETEiJ_G0025198	Zc3h6	100	91.617	Mus_spretus
ENSRNOG00000026277	Zc3h6	90	72.430	ENSMPUG00000009624	ZC3H6	99	72.897	Mustela_putorius_furo
ENSRNOG00000026277	Zc3h6	99	70.504	ENSMLUG00000004896	ZC3H6	99	71.429	Myotis_lucifugus
ENSRNOG00000026277	Zc3h6	94	77.391	ENSNGAG00000013596	Zc3h6	99	77.399	Nannospalax_galili
ENSRNOG00000026277	Zc3h6	58	67.188	ENSNBRG00000015382	zc3h6	83	42.247	Neolamprologus_brichardi
ENSRNOG00000026277	Zc3h6	99	75.973	ENSNLEG00000033657	ZC3H6	99	76.227	Nomascus_leucogenys
ENSRNOG00000026277	Zc3h6	100	69.580	ENSOPRG00000012717	ZC3H6	100	69.916	Ochotona_princeps
ENSRNOG00000026277	Zc3h6	93	73.636	ENSODEG00000009099	ZC3H6	99	73.637	Octodon_degus
ENSRNOG00000026277	Zc3h6	62	63.208	ENSONIG00000009880	zc3h6	90	41.522	Oreochromis_niloticus
ENSRNOG00000026277	Zc3h6	99	62.679	ENSOANG00000012054	-	96	63.437	Ornithorhynchus_anatinus
ENSRNOG00000026277	Zc3h6	95	72.920	ENSOCUG00000011125	ZC3H6	99	73.507	Oryctolagus_cuniculus
ENSRNOG00000026277	Zc3h6	68	54.167	ENSORLG00000011179	zc3h6	86	44.374	Oryzias_latipes
ENSRNOG00000026277	Zc3h6	68	54.167	ENSORLG00020017202	zc3h6	86	44.374	Oryzias_latipes_hni
ENSRNOG00000026277	Zc3h6	68	54.514	ENSORLG00015001664	zc3h6	86	44.586	Oryzias_latipes_hsok
ENSRNOG00000026277	Zc3h6	61	68.229	ENSOMEG00000001296	zc3h6	86	47.799	Oryzias_melastigma
ENSRNOG00000026277	Zc3h6	99	75.614	ENSOGAG00000002556	ZC3H6	100	76.037	Otolemur_garnettii
ENSRNOG00000026277	Zc3h6	100	72.315	ENSOARG00000014503	ZC3H6	100	72.483	Ovis_aries
ENSRNOG00000026277	Zc3h6	99	76.356	ENSPPAG00000030495	ZC3H6	100	76.610	Pan_paniscus
ENSRNOG00000026277	Zc3h6	100	73.950	ENSPPRG00000005673	ZC3H6	100	74.202	Panthera_pardus
ENSRNOG00000026277	Zc3h6	99	72.574	ENSPTIG00000015800	ZC3H6	99	72.996	Panthera_tigris_altaica
ENSRNOG00000026277	Zc3h6	100	76.658	ENSPTRG00000012363	ZC3H6	100	76.910	Pan_troglodytes
ENSRNOG00000026277	Zc3h6	100	76.658	ENSPANG00000025224	ZC3H6	100	76.910	Papio_anubis
ENSRNOG00000026277	Zc3h6	62	68.229	ENSPKIG00000007353	zc3h6	97	68.229	Paramormyrops_kingsleyae
ENSRNOG00000026277	Zc3h6	99	57.679	ENSPSIG00000002520	ZC3H6	100	59.225	Pelodiscus_sinensis
ENSRNOG00000026277	Zc3h6	99	81.949	ENSPEMG00000000918	Zc3h6	100	82.373	Peromyscus_maniculatus_bairdii
ENSRNOG00000026277	Zc3h6	90	63.704	ENSPCIG00000029741	ZC3H6	99	63.763	Phascolarctos_cinereus
ENSRNOG00000026277	Zc3h6	61	65.104	ENSPFOG00000015748	zc3h6	86	47.425	Poecilia_formosa
ENSRNOG00000026277	Zc3h6	61	65.104	ENSPLAG00000002469	zc3h6	86	47.425	Poecilia_latipinna
ENSRNOG00000026277	Zc3h6	61	65.104	ENSPMEG00000020802	zc3h6	83	65.775	Poecilia_mexicana
ENSRNOG00000026277	Zc3h6	66	62.621	ENSPREG00000023126	zc3h6	94	40.000	Poecilia_reticulata
ENSRNOG00000026277	Zc3h6	78	67.495	ENSPCAG00000015468	ZC3H6	79	66.808	Procavia_capensis
ENSRNOG00000026277	Zc3h6	100	77.983	ENSPCOG00000016627	ZC3H6	100	77.983	Propithecus_coquereli
ENSRNOG00000026277	Zc3h6	69	86.139	ENSPVAG00000013728	ZC3H6	70	85.149	Pteropus_vampyrus
ENSRNOG00000026277	Zc3h6	61	67.188	ENSPNYG00000018130	zc3h6	85	42.022	Pundamilia_nyererei
ENSRNOG00000026277	Zc3h6	79	41.753	ENSPNAG00000009331	zc3h6	98	39.134	Pygocentrus_nattereri
ENSRNOG00000026277	Zc3h6	100	76.594	ENSSBOG00000033489	ZC3H6	100	76.846	Saimiri_boliviensis_boliviensis
ENSRNOG00000026277	Zc3h6	83	63.317	ENSSHAG00000016634	ZC3H6	100	63.317	Sarcophilus_harrisii
ENSRNOG00000026277	Zc3h6	100	38.612	ENSSFOG00015004488	zc3h6	98	39.042	Scleropages_formosus
ENSRNOG00000026277	Zc3h6	61	65.445	ENSSMAG00000008411	zc3h6	90	42.807	Scophthalmus_maximus
ENSRNOG00000026277	Zc3h6	61	67.188	ENSSDUG00000006105	zc3h6	91	43.106	Seriola_dumerili
ENSRNOG00000026277	Zc3h6	61	67.188	ENSSLDG00000021813	zc3h6	91	43.281	Seriola_lalandi_dorsalis
ENSRNOG00000026277	Zc3h6	94	89.744	ENSSARG00000001035	ZC3H6	100	68.814	Sorex_araneus
ENSRNOG00000026277	Zc3h6	57	59.843	ENSSPUG00000013031	-	83	31.480	Sphenodon_punctatus
ENSRNOG00000026277	Zc3h6	100	75.042	ENSSSCG00000008096	ZC3H6	100	75.294	Sus_scrofa
ENSRNOG00000026277	Zc3h6	99	55.924	ENSTGUG00000007468	ZC3H6	100	56.918	Taeniopygia_guttata
ENSRNOG00000026277	Zc3h6	74	44.872	ENSTNIG00000016608	zc3h6	99	40.476	Tetraodon_nigroviridis
ENSRNOG00000026277	Zc3h6	85	73.913	ENSTBEG00000016232	ZC3H6	91	73.913	Tupaia_belangeri
ENSRNOG00000026277	Zc3h6	76	82.178	ENSTTRG00000013154	ZC3H6	77	81.188	Tursiops_truncatus
ENSRNOG00000026277	Zc3h6	90	72.710	ENSUAMG00000002401	ZC3H6	99	72.804	Ursus_americanus
ENSRNOG00000026277	Zc3h6	90	72.710	ENSUMAG00000008663	ZC3H6	99	72.804	Ursus_maritimus
ENSRNOG00000026277	Zc3h6	99	73.412	ENSVPAG00000005912	ZC3H6	100	73.751	Vicugna_pacos
ENSRNOG00000026277	Zc3h6	90	73.059	ENSVVUG00000028662	ZC3H6	99	73.152	Vulpes_vulpes
ENSRNOG00000026277	Zc3h6	87	54.756	ENSXETG00000013762	zc3h6	95	55.376	Xenopus_tropicalis
ENSRNOG00000026277	Zc3h6	55	62.621	ENSXCOG00000011662	zc3h6	70	62.621	Xiphophorus_couchianus
ENSRNOG00000026277	Zc3h6	61	65.104	ENSXMAG00000020822	zc3h6	86	46.985	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function