EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000027646 (Gene tree)
Gene ID: 292831
Gene Symbol: Pop4
Alias: LOC292831|MGC108830
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 8334 bases
Position: chr1:94661128-94669461
Accession: 1305955
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020474	UPF0086	PF01868.16	1.9e-27	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020474	-	1178	-	ENSRNOP00000020474	221 (aa)	-	Q5M882

Gene Model

Click here to download ENSRNOG00000027646's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG
rno03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000027646's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000027646	Pop4	100	83.710	ENSG00000105171	POP4	100	90.625	Homo_sapiens
ENSRNOG00000027646	Pop4	99	81.735	ENSAMEG00000018329	-	99	81.735	Ailuropoda_melanoleuca
ENSRNOG00000027646	Pop4	97	75.000	ENSAMEG00000003172	-	97	75.000	Ailuropoda_melanoleuca
ENSRNOG00000027646	Pop4	93	61.463	ENSACIG00000008358	pop4	97	61.463	Amphilophus_citrinellus
ENSRNOG00000027646	Pop4	89	64.975	ENSAOCG00000010116	pop4	96	63.959	Amphiprion_ocellaris
ENSRNOG00000027646	Pop4	92	62.439	ENSAPEG00000002829	pop4	86	61.765	Amphiprion_percula
ENSRNOG00000027646	Pop4	92	63.235	ENSATEG00000013028	pop4	92	62.255	Anabas_testudineus
ENSRNOG00000027646	Pop4	90	71.717	ENSAPLG00000014051	POP4	98	70.936	Anas_platyrhynchos
ENSRNOG00000027646	Pop4	100	83.258	ENSANAG00000020295	POP4	100	83.258	Aotus_nancymaae
ENSRNOG00000027646	Pop4	89	63.265	ENSACLG00000000526	pop4	88	63.265	Astatotilapia_calliptera
ENSRNOG00000027646	Pop4	100	60.181	ENSAMXG00000002899	pop4	100	60.633	Astyanax_mexicanus
ENSRNOG00000027646	Pop4	100	85.520	ENSBTAG00000002223	POP4	100	85.520	Bos_taurus
ENSRNOG00000027646	Pop4	100	83.710	ENSCJAG00000046750	POP4	100	86.667	Callithrix_jacchus
ENSRNOG00000027646	Pop4	83	85.792	ENSCAFG00000007630	POP4	100	84.699	Canis_familiaris
ENSRNOG00000027646	Pop4	100	86.425	ENSCHIG00000016743	POP4	100	85.520	Capra_hircus
ENSRNOG00000027646	Pop4	100	84.163	ENSTSYG00000003488	POP4	100	83.258	Carlito_syrichta
ENSRNOG00000027646	Pop4	99	63.761	ENSCAPG00000011105	POP4	100	63.761	Cavia_aperea
ENSRNOG00000027646	Pop4	100	85.068	ENSCPOG00000002992	POP4	100	85.068	Cavia_porcellus
ENSRNOG00000027646	Pop4	100	84.615	ENSCCAG00000020285	-	100	83.258	Cebus_capucinus
ENSRNOG00000027646	Pop4	100	74.208	ENSCCAG00000034244	-	100	73.756	Cebus_capucinus
ENSRNOG00000027646	Pop4	100	85.068	ENSCATG00000036022	POP4	100	92.708	Cercocebus_atys
ENSRNOG00000027646	Pop4	100	85.068	ENSCLAG00000013162	POP4	100	84.163	Chinchilla_lanigera
ENSRNOG00000027646	Pop4	99	84.475	ENSCSAG00000004868	POP4	100	84.475	Chlorocebus_sabaeus
ENSRNOG00000027646	Pop4	99	63.303	ENSCHOG00000002071	POP4	100	62.385	Choloepus_hoffmanni
ENSRNOG00000027646	Pop4	100	69.231	ENSCPBG00000016132	POP4	100	69.231	Chrysemys_picta_bellii
ENSRNOG00000027646	Pop4	84	33.508	ENSCING00000023871	-	94	33.846	Ciona_intestinalis
ENSRNOG00000027646	Pop4	90	85.930	ENSCANG00000005924	POP4	98	85.930	Colobus_angolensis_palliatus
ENSRNOG00000027646	Pop4	100	91.855	ENSCGRG00001017185	Pop4	100	91.403	Cricetulus_griseus_chok1gshd
ENSRNOG00000027646	Pop4	100	91.855	ENSCGRG00000008155	Pop4	100	91.403	Cricetulus_griseus_crigri
ENSRNOG00000027646	Pop4	92	53.922	ENSCSEG00000002946	pop4	92	53.922	Cynoglossus_semilaevis
ENSRNOG00000027646	Pop4	92	45.588	ENSCVAG00000018602	POP4	87	45.098	Cyprinodon_variegatus
ENSRNOG00000027646	Pop4	88	65.000	ENSDARG00000101472	pop4	88	65.641	Danio_rerio
ENSRNOG00000027646	Pop4	100	83.710	ENSDNOG00000047663	POP4	88	82.805	Dasypus_novemcinctus
ENSRNOG00000027646	Pop4	78	82.081	ENSDORG00000008577	Pop4	100	81.503	Dipodomys_ordii
ENSRNOG00000027646	Pop4	86	33.333	FBgn0035831	CG8038	96	33.333	Drosophila_melanogaster
ENSRNOG00000027646	Pop4	99	69.266	ENSETEG00000003607	POP4	100	68.807	Echinops_telfairi
ENSRNOG00000027646	Pop4	100	45.946	ENSEBUG00000008575	pop4	100	45.495	Eptatretus_burgeri
ENSRNOG00000027646	Pop4	100	42.616	ENSEBUG00000004305	pop4	100	42.918	Eptatretus_burgeri
ENSRNOG00000027646	Pop4	91	48.165	ENSEBUG00000010447	pop4	83	48.598	Eptatretus_burgeri
ENSRNOG00000027646	Pop4	100	82.692	ENSECAG00000020206	POP4	82	82.692	Equus_caballus
ENSRNOG00000027646	Pop4	90	63.131	ENSEEUG00000013109	POP4	99	62.121	Erinaceus_europaeus
ENSRNOG00000027646	Pop4	88	64.103	ENSELUG00000019812	pop4	88	64.103	Esox_lucius
ENSRNOG00000027646	Pop4	100	83.710	ENSFCAG00000001619	POP4	100	84.163	Felis_catus
ENSRNOG00000027646	Pop4	98	67.742	ENSFALG00000000206	POP4	96	67.281	Ficedula_albicollis
ENSRNOG00000027646	Pop4	100	86.425	ENSFDAG00000017859	POP4	100	85.520	Fukomys_damarensis
ENSRNOG00000027646	Pop4	89	56.784	ENSFHEG00000012745	pop4	90	55.779	Fundulus_heteroclitus
ENSRNOG00000027646	Pop4	90	60.804	ENSGMOG00000000335	pop4	98	59.799	Gadus_morhua
ENSRNOG00000027646	Pop4	100	66.063	ENSGALG00000041972	POP4	92	66.063	Gallus_gallus
ENSRNOG00000027646	Pop4	79	53.672	ENSGAFG00000003571	pop4	98	53.672	Gambusia_affinis
ENSRNOG00000027646	Pop4	92	60.294	ENSGACG00000014510	pop4	98	63.333	Gasterosteus_aculeatus
ENSRNOG00000027646	Pop4	100	69.231	ENSGAGG00000024544	POP4	79	69.683	Gopherus_agassizii
ENSRNOG00000027646	Pop4	99	84.018	ENSGGOG00000038346	POP4	99	84.018	Gorilla_gorilla
ENSRNOG00000027646	Pop4	89	63.265	ENSHBUG00000021821	pop4	88	63.265	Haplochromis_burtoni
ENSRNOG00000027646	Pop4	99	86.758	ENSHGLG00000015798	POP4	99	85.845	Heterocephalus_glaber_female
ENSRNOG00000027646	Pop4	100	86.425	ENSHGLG00100009737	POP4	100	85.520	Heterocephalus_glaber_male
ENSRNOG00000027646	Pop4	89	66.327	ENSHCOG00000020937	pop4	88	66.327	Hippocampus_comes
ENSRNOG00000027646	Pop4	100	59.276	ENSIPUG00000013652	pop4	100	59.276	Ictalurus_punctatus
ENSRNOG00000027646	Pop4	100	85.973	ENSSTOG00000011016	POP4	100	85.068	Ictidomys_tridecemlineatus
ENSRNOG00000027646	Pop4	100	88.235	ENSJJAG00000013376	Pop4	100	87.330	Jaculus_jaculus
ENSRNOG00000027646	Pop4	99	60.714	ENSKMAG00000012250	pop4	99	60.909	Kryptolebias_marmoratus
ENSRNOG00000027646	Pop4	99	55.856	ENSLBEG00000018846	-	99	55.455	Labrus_bergylta
ENSRNOG00000027646	Pop4	99	56.306	ENSLBEG00000014139	pop4	99	55.909	Labrus_bergylta
ENSRNOG00000027646	Pop4	99	62.844	ENSLACG00000008581	POP4	98	62.844	Latimeria_chalumnae
ENSRNOG00000027646	Pop4	100	64.706	ENSLOCG00000005597	pop4	100	65.766	Lepisosteus_oculatus
ENSRNOG00000027646	Pop4	100	84.615	ENSLAFG00000000084	POP4	100	84.615	Loxodonta_africana
ENSRNOG00000027646	Pop4	100	84.615	ENSMFAG00000029606	POP4	100	84.615	Macaca_fascicularis
ENSRNOG00000027646	Pop4	100	85.068	ENSMMUG00000017424	POP4	100	85.068	Macaca_mulatta
ENSRNOG00000027646	Pop4	100	85.068	ENSMNEG00000031374	POP4	100	85.068	Macaca_nemestrina
ENSRNOG00000027646	Pop4	100	85.068	ENSMLEG00000043454	POP4	100	84.163	Mandrillus_leucophaeus
ENSRNOG00000027646	Pop4	85	66.489	ENSMAMG00000011716	pop4	91	62.745	Mastacembelus_armatus
ENSRNOG00000027646	Pop4	89	63.265	ENSMZEG00005002360	pop4	88	63.265	Maylandia_zebra
ENSRNOG00000027646	Pop4	99	67.123	ENSMGAG00000005337	POP4	97	67.273	Meleagris_gallopavo
ENSRNOG00000027646	Pop4	100	90.950	ENSMAUG00000020110	Pop4	100	89.593	Mesocricetus_auratus
ENSRNOG00000027646	Pop4	99	81.735	ENSMICG00000035730	POP4	98	80.822	Microcebus_murinus
ENSRNOG00000027646	Pop4	99	60.455	ENSMMOG00000015321	pop4	99	60.455	Mola_mola
ENSRNOG00000027646	Pop4	98	78.341	ENSMODG00000029406	POP4	94	76.959	Monodelphis_domestica
ENSRNOG00000027646	Pop4	94	63.462	ENSMALG00000012571	pop4	94	63.462	Monopterus_albus
ENSRNOG00000027646	Pop4	100	95.928	MGP_CAROLIEiJ_G0029600	Pop4	100	95.928	Mus_caroli
ENSRNOG00000027646	Pop4	100	95.475	ENSMUSG00000030423	Pop4	100	95.475	Mus_musculus
ENSRNOG00000027646	Pop4	100	94.118	MGP_SPRETEiJ_G0030699	Pop4	100	95.023	Mus_spretus
ENSRNOG00000027646	Pop4	100	83.710	ENSMPUG00000008041	-	100	82.805	Mustela_putorius_furo
ENSRNOG00000027646	Pop4	100	71.622	ENSMPUG00000008063	-	100	71.622	Mustela_putorius_furo
ENSRNOG00000027646	Pop4	99	63.636	ENSMLUG00000010774	POP4	99	63.182	Myotis_lucifugus
ENSRNOG00000027646	Pop4	57	81.600	ENSMEUG00000003636	-	100	81.600	Notamacropus_eugenii
ENSRNOG00000027646	Pop4	90	87.500	ENSOPRG00000004736	POP4	99	86.000	Ochotona_princeps
ENSRNOG00000027646	Pop4	99	85.388	ENSODEG00000013025	POP4	100	84.977	Octodon_degus
ENSRNOG00000027646	Pop4	89	62.755	ENSONIG00000003458	pop4	87	62.755	Oreochromis_niloticus
ENSRNOG00000027646	Pop4	100	83.710	ENSOCUG00000015974	POP4	100	83.710	Oryctolagus_cuniculus
ENSRNOG00000027646	Pop4	90	59.804	ENSORLG00000020317	pop4	92	58.824	Oryzias_latipes
ENSRNOG00000027646	Pop4	92	58.537	ENSORLG00015011624	pop4	92	57.561	Oryzias_latipes_hsok
ENSRNOG00000027646	Pop4	90	62.500	ENSOMEG00000002538	pop4	89	61.307	Oryzias_melastigma
ENSRNOG00000027646	Pop4	99	86.301	ENSOGAG00000011168	POP4	99	85.388	Otolemur_garnettii
ENSRNOG00000027646	Pop4	100	86.036	ENSOARG00000004041	POP4	100	85.135	Ovis_aries
ENSRNOG00000027646	Pop4	100	84.163	ENSPPAG00000040372	POP4	100	84.163	Pan_paniscus
ENSRNOG00000027646	Pop4	100	83.710	ENSPPRG00000010502	POP4	100	84.163	Panthera_pardus
ENSRNOG00000027646	Pop4	100	83.710	ENSPTIG00000016598	POP4	100	84.163	Panthera_tigris_altaica
ENSRNOG00000027646	Pop4	100	84.163	ENSPTRG00000010779	POP4	100	84.163	Pan_troglodytes
ENSRNOG00000027646	Pop4	100	84.615	ENSPANG00000008546	POP4	100	84.615	Papio_anubis
ENSRNOG00000027646	Pop4	89	67.677	ENSPKIG00000004468	pop4	87	67.677	Paramormyrops_kingsleyae
ENSRNOG00000027646	Pop4	100	70.136	ENSPSIG00000015690	POP4	98	74.372	Pelodiscus_sinensis
ENSRNOG00000027646	Pop4	90	57.143	ENSPMGG00000008608	pop4	97	57.635	Periophthalmus_magnuspinnatus
ENSRNOG00000027646	Pop4	100	90.498	ENSPEMG00000014034	-	96	89.140	Peromyscus_maniculatus_bairdii
ENSRNOG00000027646	Pop4	99	75.799	ENSPEMG00000019982	-	100	75.799	Peromyscus_maniculatus_bairdii
ENSRNOG00000027646	Pop4	66	65.517	ENSPMAG00000006265	pop4	73	65.517	Petromyzon_marinus
ENSRNOG00000027646	Pop4	100	79.186	ENSPCIG00000024738	POP4	95	78.281	Phascolarctos_cinereus
ENSRNOG00000027646	Pop4	92	59.615	ENSPFOG00000000925	pop4	94	59.615	Poecilia_formosa
ENSRNOG00000027646	Pop4	92	59.615	ENSPLAG00000003161	pop4	94	59.615	Poecilia_latipinna
ENSRNOG00000027646	Pop4	92	59.615	ENSPMEG00000002475	pop4	94	59.615	Poecilia_mexicana
ENSRNOG00000027646	Pop4	92	60.591	ENSPREG00000022403	pop4	88	60.591	Poecilia_reticulata
ENSRNOG00000027646	Pop4	100	84.615	ENSPPYG00000009805	POP4	100	84.615	Pongo_abelii
ENSRNOG00000027646	Pop4	99	75.455	ENSPCAG00000007737	POP4	99	75.455	Procavia_capensis
ENSRNOG00000027646	Pop4	100	85.520	ENSPCOG00000018055	POP4	100	84.615	Propithecus_coquereli
ENSRNOG00000027646	Pop4	100	80.543	ENSPVAG00000006069	POP4	100	80.090	Pteropus_vampyrus
ENSRNOG00000027646	Pop4	89	63.265	ENSPNYG00000020038	pop4	88	63.265	Pundamilia_nyererei
ENSRNOG00000027646	Pop4	100	61.538	ENSPNAG00000005591	pop4	100	61.538	Pygocentrus_nattereri
ENSRNOG00000027646	Pop4	80	81.818	ENSRBIG00000044769	POP4	89	84.173	Rhinopithecus_bieti
ENSRNOG00000027646	Pop4	100	84.615	ENSRROG00000028903	POP4	100	84.615	Rhinopithecus_roxellana
ENSRNOG00000027646	Pop4	57	34.532	YBR257W	-	50	34.532	Saccharomyces_cerevisiae
ENSRNOG00000027646	Pop4	100	85.068	ENSSBOG00000032445	POP4	100	83.710	Saimiri_boliviensis_boliviensis
ENSRNOG00000027646	Pop4	99	76.712	ENSSHAG00000016888	POP4	99	75.799	Sarcophilus_harrisii
ENSRNOG00000027646	Pop4	92	66.502	ENSSFOG00015014556	pop4	90	66.010	Scleropages_formosus
ENSRNOG00000027646	Pop4	90	63.819	ENSSMAG00000016611	pop4	93	63.317	Scophthalmus_maximus
ENSRNOG00000027646	Pop4	92	62.255	ENSSDUG00000019865	pop4	82	61.275	Seriola_dumerili
ENSRNOG00000027646	Pop4	96	61.215	ENSSLDG00000001763	pop4	92	60.280	Seriola_lalandi_dorsalis
ENSRNOG00000027646	Pop4	99	86.697	ENSSARG00000004748	POP4	100	86.239	Sorex_araneus
ENSRNOG00000027646	Pop4	99	61.086	ENSSPAG00000014364	pop4	98	60.455	Stegastes_partitus
ENSRNOG00000027646	Pop4	100	85.973	ENSSSCG00000002854	POP4	100	85.973	Sus_scrofa
ENSRNOG00000027646	Pop4	90	71.859	ENSTGUG00000008953	POP4	99	71.357	Taeniopygia_guttata
ENSRNOG00000027646	Pop4	92	61.165	ENSTNIG00000006401	pop4	100	60.099	Tetraodon_nigroviridis
ENSRNOG00000027646	Pop4	100	85.520	ENSTBEG00000002194	POP4	100	85.520	Tupaia_belangeri
ENSRNOG00000027646	Pop4	100	83.258	ENSTTRG00000005882	POP4	100	83.258	Tursiops_truncatus
ENSRNOG00000027646	Pop4	100	82.805	ENSUAMG00000003049	-	100	81.900	Ursus_americanus
ENSRNOG00000027646	Pop4	100	82.805	ENSUMAG00000007522	-	100	81.900	Ursus_maritimus
ENSRNOG00000027646	Pop4	92	84.236	ENSVVUG00000016876	-	71	83.251	Vulpes_vulpes
ENSRNOG00000027646	Pop4	98	66.359	ENSXETG00000017598	pop4	98	66.359	Xenopus_tropicalis
ENSRNOG00000027646	Pop4	92	60.976	ENSXCOG00000017695	pop4	88	60.976	Xiphophorus_couchianus
ENSRNOG00000027646	Pop4	92	60.976	ENSXMAG00000013862	pop4	88	60.976	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000171	ribonuclease MRP activity	21873635.	IBA	Function
GO:0000172	ribonuclease MRP complex	21873635.	IBA	Component
GO:0001682	tRNA 5'-leader removal	-	IEA	Process
GO:0001682	tRNA 5'-leader removal	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0004526	ribonuclease P activity	21873635.	IBA	Function
GO:0004526	ribonuclease P activity	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0030677	ribonuclease P complex	21873635.	IBA	Component
GO:0030681	multimeric ribonuclease P complex	-	IEA	Component
GO:0030681	multimeric ribonuclease P complex	-	ISO	Component
GO:0033204	ribonuclease P RNA binding	21873635.	IBA	Function
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process