EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000027761 (Gene tree)
Gene ID: 317612
Gene Symbol: Htatsf1
Alias: LOC317612|RGD1563377
Full Name: HIV-1 Tat specific factor 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 14482 bases
Position: chrX:159513800-159528281
Accession: 1563377
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000061583	RRM_1	PF00076.22	2.7e-16	1	2
ENSRNOP00000061583	RRM_1	PF00076.22	2.7e-16	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000065636	-	3164	-	ENSRNOP00000061583	776 (aa)	-	D4A997

Gene Model

Click here to download ENSRNOG00000027761's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000027761's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000027761	Htatsf1	99	73.643	ENSG00000102241	HTATSF1	100	86.885	Homo_sapiens
ENSRNOG00000027761	Htatsf1	99	74.103	ENSAMEG00000002921	HTATSF1	99	73.052	Ailuropoda_melanoleuca
ENSRNOG00000027761	Htatsf1	94	70.178	ENSANAG00000025458	-	99	69.494	Aotus_nancymaae
ENSRNOG00000027761	Htatsf1	95	63.320	ENSANAG00000027986	-	97	62.800	Aotus_nancymaae
ENSRNOG00000027761	Htatsf1	50	62.103	ENSACLG00000008096	htatsf1	88	62.103	Astatotilapia_calliptera
ENSRNOG00000027761	Htatsf1	99	74.679	ENSBTAG00000055212	HTATSF1	100	74.522	Bos_taurus
ENSRNOG00000027761	Htatsf1	99	66.110	ENSBTAG00000032711	HTATSF1	99	68.766	Bos_taurus
ENSRNOG00000027761	Htatsf1	99	74.679	ENSBTAG00000054942	HTATSF1	100	74.522	Bos_taurus
ENSRNOG00000027761	Htatsf1	99	72.657	ENSCJAG00000003676	HTATSF1	99	72.015	Callithrix_jacchus
ENSRNOG00000027761	Htatsf1	99	74.742	ENSCAFG00000023294	HTATSF1	100	73.852	Canis_familiaris
ENSRNOG00000027761	Htatsf1	99	74.650	ENSCAFG00020024635	HTATSF1	100	73.770	Canis_lupus_dingo
ENSRNOG00000027761	Htatsf1	99	74.165	ENSCHIG00000000312	HTATSF1	99	73.885	Capra_hircus
ENSRNOG00000027761	Htatsf1	99	75.484	ENSTSYG00000028876	HTATSF1	100	76.117	Carlito_syrichta
ENSRNOG00000027761	Htatsf1	99	68.696	ENSCCAG00000022701	-	99	72.365	Cebus_capucinus
ENSRNOG00000027761	Htatsf1	99	69.330	ENSCCAG00000025329	-	89	75.637	Cebus_capucinus
ENSRNOG00000027761	Htatsf1	99	73.514	ENSCATG00000029963	HTATSF1	99	74.422	Cercocebus_atys
ENSRNOG00000027761	Htatsf1	100	69.860	ENSCLAG00000002718	HTATSF1	81	75.439	Chinchilla_lanigera
ENSRNOG00000027761	Htatsf1	99	73.643	ENSCSAG00000007505	HTATSF1	99	74.550	Chlorocebus_sabaeus
ENSRNOG00000027761	Htatsf1	99	73.643	ENSCANG00000028495	HTATSF1	99	74.550	Colobus_angolensis_palliatus
ENSRNOG00000027761	Htatsf1	99	83.483	ENSCGRG00001021602	Htatsf1	99	83.611	Cricetulus_griseus_chok1gshd
ENSRNOG00000027761	Htatsf1	91	77.855	ENSCGRG00000002085	Htatsf1	99	77.855	Cricetulus_griseus_crigri
ENSRNOG00000027761	Htatsf1	99	72.774	ENSDNOG00000002254	HTATSF1	99	73.880	Dasypus_novemcinctus
ENSRNOG00000027761	Htatsf1	91	42.514	ENSETEG00000006377	-	69	48.289	Echinops_telfairi
ENSRNOG00000027761	Htatsf1	82	77.760	ENSEASG00005003440	HTATSF1	99	74.365	Equus_asinus_asinus
ENSRNOG00000027761	Htatsf1	82	77.760	ENSECAG00000009156	HTATSF1	99	74.365	Equus_caballus
ENSRNOG00000027761	Htatsf1	99	62.723	ENSEEUG00000010668	HTATSF1	99	62.832	Erinaceus_europaeus
ENSRNOG00000027761	Htatsf1	100	74.079	ENSFCAG00000031924	HTATSF1	100	73.825	Felis_catus
ENSRNOG00000027761	Htatsf1	99	71.466	ENSFDAG00000008617	HTATSF1	100	72.087	Fukomys_damarensis
ENSRNOG00000027761	Htatsf1	99	73.514	ENSGGOG00000026072	HTATSF1	99	74.359	Gorilla_gorilla
ENSRNOG00000027761	Htatsf1	50	62.103	ENSHBUG00000004392	htatsf1	88	62.103	Haplochromis_burtoni
ENSRNOG00000027761	Htatsf1	98	70.719	ENSHGLG00000005328	HTATSF1	100	69.910	Heterocephalus_glaber_female
ENSRNOG00000027761	Htatsf1	99	77.073	ENSSTOG00000012505	HTATSF1	99	75.161	Ictidomys_tridecemlineatus
ENSRNOG00000027761	Htatsf1	99	64.812	ENSLAFG00000014307	HTATSF1	89	71.339	Loxodonta_africana
ENSRNOG00000027761	Htatsf1	99	73.643	ENSMFAG00000044705	HTATSF1	99	74.550	Macaca_fascicularis
ENSRNOG00000027761	Htatsf1	99	73.385	ENSMMUG00000006450	HTATSF1	99	74.293	Macaca_mulatta
ENSRNOG00000027761	Htatsf1	99	76.399	ENSMNEG00000024084	HTATSF1	99	69.063	Macaca_nemestrina
ENSRNOG00000027761	Htatsf1	99	73.385	ENSMLEG00000035511	HTATSF1	99	74.422	Mandrillus_leucophaeus
ENSRNOG00000027761	Htatsf1	50	62.103	ENSMZEG00005000485	htatsf1	88	62.103	Maylandia_zebra
ENSRNOG00000027761	Htatsf1	99	82.216	ENSMAUG00000007235	Htatsf1	99	81.701	Mesocricetus_auratus
ENSRNOG00000027761	Htatsf1	99	74.872	ENSMICG00000009348	HTATSF1	99	75.000	Microcebus_murinus
ENSRNOG00000027761	Htatsf1	99	80.051	ENSMOCG00000023007	-	99	78.145	Microtus_ochrogaster
ENSRNOG00000027761	Htatsf1	99	78.646	ENSMOCG00000022370	-	79	82.212	Microtus_ochrogaster
ENSRNOG00000027761	Htatsf1	50	62.162	ENSMMOG00000011013	htatsf1	90	61.557	Mola_mola
ENSRNOG00000027761	Htatsf1	50	69.666	ENSMODG00000014087	-	85	69.666	Monodelphis_domestica
ENSRNOG00000027761	Htatsf1	53	57.674	ENSMALG00000019977	htatsf1	94	57.674	Monopterus_albus
ENSRNOG00000027761	Htatsf1	100	87.001	MGP_CAROLIEiJ_G0033094	Htatsf1	100	86.358	Mus_caroli
ENSRNOG00000027761	Htatsf1	98	87.122	ENSMUSG00000067873	Htatsf1	100	87.387	Mus_musculus
ENSRNOG00000027761	Htatsf1	98	87.122	MGP_SPRETEiJ_G0034249	Htatsf1	100	87.516	Mus_spretus
ENSRNOG00000027761	Htatsf1	99	72.137	ENSMPUG00000001901	HTATSF1	99	72.137	Mustela_putorius_furo
ENSRNOG00000027761	Htatsf1	99	69.638	ENSMLUG00000028418	-	99	68.886	Myotis_lucifugus
ENSRNOG00000027761	Htatsf1	99	65.065	ENSMLUG00000009234	-	100	63.995	Myotis_lucifugus
ENSRNOG00000027761	Htatsf1	98	78.244	ENSNGAG00000017831	Htatsf1	99	78.737	Nannospalax_galili
ENSRNOG00000027761	Htatsf1	50	62.103	ENSNBRG00000003818	htatsf1	82	62.334	Neolamprologus_brichardi
ENSRNOG00000027761	Htatsf1	99	73.773	ENSNLEG00000002746	HTATSF1	100	74.425	Nomascus_leucogenys
ENSRNOG00000027761	Htatsf1	99	74.359	ENSOCUG00000012570	HTATSF1	99	74.872	Oryctolagus_cuniculus
ENSRNOG00000027761	Htatsf1	98	71.948	ENSOGAG00000005565	HTATSF1	99	72.959	Otolemur_garnettii
ENSRNOG00000027761	Htatsf1	99	74.036	ENSOARG00000011215	-	99	73.758	Ovis_aries
ENSRNOG00000027761	Htatsf1	99	69.093	ENSOARG00000000481	-	82	73.810	Ovis_aries
ENSRNOG00000027761	Htatsf1	99	73.643	ENSPPAG00000024268	HTATSF1	99	74.487	Pan_paniscus
ENSRNOG00000027761	Htatsf1	100	73.724	ENSPPRG00000014209	HTATSF1	100	73.469	Panthera_pardus
ENSRNOG00000027761	Htatsf1	93	72.802	ENSPTIG00000016887	HTATSF1	96	72.527	Panthera_tigris_altaica
ENSRNOG00000027761	Htatsf1	99	73.643	ENSPTRG00000044591	HTATSF1	99	74.487	Pan_troglodytes
ENSRNOG00000027761	Htatsf1	99	69.622	ENSPANG00000010946	HTATSF1	99	60.540	Papio_anubis
ENSRNOG00000027761	Htatsf1	98	82.940	ENSPEMG00000022397	Htatsf1	99	82.861	Peromyscus_maniculatus_bairdii
ENSRNOG00000027761	Htatsf1	50	62.315	ENSPLAG00000007532	htatsf1	89	62.315	Poecilia_latipinna
ENSRNOG00000027761	Htatsf1	82	77.830	ENSPPYG00000020765	HTATSF1	81	77.742	Pongo_abelii
ENSRNOG00000027761	Htatsf1	93	63.586	ENSPCAG00000010576	HTATSF1	83	64.968	Procavia_capensis
ENSRNOG00000027761	Htatsf1	99	75.738	ENSPCOG00000021823	HTATSF1	99	76.123	Propithecus_coquereli
ENSRNOG00000027761	Htatsf1	98	68.229	ENSPVAG00000010281	HTATSF1	88	71.474	Pteropus_vampyrus
ENSRNOG00000027761	Htatsf1	50	62.592	ENSPNYG00000016693	htatsf1	88	62.592	Pundamilia_nyererei
ENSRNOG00000027761	Htatsf1	99	64.119	ENSRBIG00000035486	HTATSF1	99	65.039	Rhinopithecus_bieti
ENSRNOG00000027761	Htatsf1	99	73.575	ENSRROG00000021939	HTATSF1	99	74.550	Rhinopithecus_roxellana
ENSRNOG00000027761	Htatsf1	99	71.669	ENSSBOG00000027186	-	99	72.401	Saimiri_boliviensis_boliviensis
ENSRNOG00000027761	Htatsf1	99	70.785	ENSSBOG00000017914	-	99	70.142	Saimiri_boliviensis_boliviensis
ENSRNOG00000027761	Htatsf1	98	59.481	ENSSARG00000005193	HTATSF1	78	68.465	Sorex_araneus
ENSRNOG00000027761	Htatsf1	99	65.000	ENSSSCG00000023062	HTATSF1	99	65.438	Sus_scrofa
ENSRNOG00000027761	Htatsf1	85	64.857	ENSTTRG00000002269	HTATSF1	91	66.118	Tursiops_truncatus
ENSRNOG00000027761	Htatsf1	99	74.069	ENSUAMG00000012048	HTATSF1	99	73.941	Ursus_americanus
ENSRNOG00000027761	Htatsf1	99	74.330	ENSUMAG00000010393	HTATSF1	99	73.436	Ursus_maritimus
ENSRNOG00000027761	Htatsf1	91	66.246	ENSVPAG00000004569	HTATSF1	99	65.972	Vicugna_pacos
ENSRNOG00000027761	Htatsf1	99	74.744	ENSVVUG00000024802	HTATSF1	100	73.858	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005684	U2-type spliceosomal complex	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component