EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000027867 (Gene tree)
Gene ID: 311826
Gene Symbol: Rexo4
Alias: LOC311826|Xpmc2h
Full Name: REX4 homolog%2C 3'-5' exonuclease
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10320 bases
Position: chr3:5500589-5510908
Accession: 1306220
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000043432	RNase_T	PF00929.24	5.5e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000042289	-	2349	-	ENSRNOP00000043432	409 (aa)	-	B1WBN4

Gene Model

Click here to download ENSRNOG00000027867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000027867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000027867	Rexo4	50	38.605	ENSRNOG00000018421	Aen	81	34.307

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000027867	Rexo4	99	68.599	ENSG00000148300	REXO4	94	83.168	Homo_sapiens
ENSRNOG00000027867	Rexo4	83	51.003	ENSAPOG00000019264	rexo4	83	50.562	Acanthochromis_polyacanthus
ENSRNOG00000027867	Rexo4	92	65.879	ENSAMEG00000011649	REXO4	90	66.667	Ailuropoda_melanoleuca
ENSRNOG00000027867	Rexo4	83	52.125	ENSAOCG00000004087	rexo4	83	51.667	Amphiprion_ocellaris
ENSRNOG00000027867	Rexo4	83	51.841	ENSAPEG00000009106	rexo4	83	51.389	Amphiprion_percula
ENSRNOG00000027867	Rexo4	85	49.861	ENSATEG00000017662	rexo4	82	49.861	Anabas_testudineus
ENSRNOG00000027867	Rexo4	80	54.734	ENSAPLG00000005865	REXO4	98	54.734	Anas_platyrhynchos
ENSRNOG00000027867	Rexo4	99	64.891	ENSANAG00000028404	REXO4	97	65.942	Aotus_nancymaae
ENSRNOG00000027867	Rexo4	85	50.678	ENSACLG00000006007	rexo4	83	50.678	Astatotilapia_calliptera
ENSRNOG00000027867	Rexo4	83	51.247	ENSAMXG00000013291	rexo4	80	51.801	Astyanax_mexicanus
ENSRNOG00000027867	Rexo4	90	64.611	ENSBTAG00000019721	REXO4	96	62.687	Bos_taurus
ENSRNOG00000027867	Rexo4	99	65.942	ENSCJAG00000009774	REXO4	97	66.425	Callithrix_jacchus
ENSRNOG00000027867	Rexo4	94	66.414	ENSCAFG00000019767	REXO4	91	68.182	Canis_familiaris
ENSRNOG00000027867	Rexo4	97	66.832	ENSCAFG00020000983	-	87	68.984	Canis_lupus_dingo
ENSRNOG00000027867	Rexo4	89	65.489	ENSCHIG00000009517	REXO4	95	63.065	Capra_hircus
ENSRNOG00000027867	Rexo4	91	70.241	ENSTSYG00000027492	REXO4	89	70.241	Carlito_syrichta
ENSRNOG00000027867	Rexo4	83	67.742	ENSCAPG00000014583	REXO4	99	67.155	Cavia_aperea
ENSRNOG00000027867	Rexo4	96	65.060	ENSCPOG00000001386	REXO4	93	64.819	Cavia_porcellus
ENSRNOG00000027867	Rexo4	99	61.353	ENSCCAG00000027049	REXO4	97	61.111	Cebus_capucinus
ENSRNOG00000027867	Rexo4	98	67.718	ENSCATG00000028646	REXO4	96	68.204	Cercocebus_atys
ENSRNOG00000027867	Rexo4	80	70.909	ENSCLAG00000006919	REXO4	100	70.606	Chinchilla_lanigera
ENSRNOG00000027867	Rexo4	99	67.312	ENSCSAG00000015280	REXO4	97	67.070	Chlorocebus_sabaeus
ENSRNOG00000027867	Rexo4	95	51.605	ENSCPBG00000021152	REXO4	86	55.249	Chrysemys_picta_bellii
ENSRNOG00000027867	Rexo4	52	57.075	ENSCING00000010751	-	81	55.204	Ciona_intestinalis
ENSRNOG00000027867	Rexo4	98	67.718	ENSCANG00000029855	REXO4	96	67.476	Colobus_angolensis_palliatus
ENSRNOG00000027867	Rexo4	100	82.282	ENSCGRG00001013126	Rexo4	96	82.282	Cricetulus_griseus_chok1gshd
ENSRNOG00000027867	Rexo4	100	82.282	ENSCGRG00000009819	Rexo4	100	82.282	Cricetulus_griseus_crigri
ENSRNOG00000027867	Rexo4	83	50.585	ENSCSEG00000019343	rexo4	80	50.585	Cynoglossus_semilaevis
ENSRNOG00000027867	Rexo4	83	48.116	ENSCVAG00000014963	rexo4	82	48.116	Cyprinodon_variegatus
ENSRNOG00000027867	Rexo4	83	50.427	ENSDARG00000088619	rexo4	79	65.888	Danio_rerio
ENSRNOG00000027867	Rexo4	94	55.034	ENSDNOG00000002429	REXO4	87	56.563	Dasypus_novemcinctus
ENSRNOG00000027867	Rexo4	82	72.404	ENSDORG00000006190	Rexo4	99	72.404	Dipodomys_ordii
ENSRNOG00000027867	Rexo4	59	66.667	ENSEASG00005009915	-	79	66.667	Equus_asinus_asinus
ENSRNOG00000027867	Rexo4	91	68.085	ENSECAG00000007896	REXO4	81	68.564	Equus_caballus
ENSRNOG00000027867	Rexo4	62	81.503	ENSEEUG00000012135	-	97	56.329	Erinaceus_europaeus
ENSRNOG00000027867	Rexo4	89	48.196	ENSELUG00000003539	rexo4	87	48.593	Esox_lucius
ENSRNOG00000027867	Rexo4	91	66.489	ENSFCAG00000011652	REXO4	85	67.925	Felis_catus
ENSRNOG00000027867	Rexo4	90	53.525	ENSFALG00000001520	REXO4	91	53.525	Ficedula_albicollis
ENSRNOG00000027867	Rexo4	99	69.249	ENSFDAG00000016050	REXO4	98	69.249	Fukomys_damarensis
ENSRNOG00000027867	Rexo4	91	49.600	ENSFHEG00000002413	rexo4	83	51.744	Fundulus_heteroclitus
ENSRNOG00000027867	Rexo4	51	58.685	ENSGMOG00000012876	rexo4	64	58.685	Gadus_morhua
ENSRNOG00000027867	Rexo4	67	47.842	ENSGAFG00000015404	-	83	47.857	Gambusia_affinis
ENSRNOG00000027867	Rexo4	83	50.286	ENSGACG00000008065	rexo4	79	50.857	Gasterosteus_aculeatus
ENSRNOG00000027867	Rexo4	85	55.966	ENSGAGG00000010260	REXO4	85	55.966	Gopherus_agassizii
ENSRNOG00000027867	Rexo4	99	68.357	ENSGGOG00000014508	REXO4	97	68.116	Gorilla_gorilla
ENSRNOG00000027867	Rexo4	85	50.407	ENSHBUG00000000542	rexo4	83	50.407	Haplochromis_burtoni
ENSRNOG00000027867	Rexo4	98	67.647	ENSHGLG00000016901	REXO4	98	67.892	Heterocephalus_glaber_female
ENSRNOG00000027867	Rexo4	98	67.647	ENSHGLG00100017444	REXO4	98	67.892	Heterocephalus_glaber_male
ENSRNOG00000027867	Rexo4	57	57.143	ENSHCOG00000018196	rexo4	62	57.143	Hippocampus_comes
ENSRNOG00000027867	Rexo4	83	49.292	ENSIPUG00000021084	rexo4	80	49.292	Ictalurus_punctatus
ENSRNOG00000027867	Rexo4	97	71.250	ENSSTOG00000003754	REXO4	95	71.250	Ictidomys_tridecemlineatus
ENSRNOG00000027867	Rexo4	100	72.816	ENSJJAG00000013002	Rexo4	87	75.332	Jaculus_jaculus
ENSRNOG00000027867	Rexo4	83	50.284	ENSKMAG00000015039	rexo4	81	50.284	Kryptolebias_marmoratus
ENSRNOG00000027867	Rexo4	83	49.714	ENSLBEG00000025570	rexo4	80	50.000	Labrus_bergylta
ENSRNOG00000027867	Rexo4	87	50.529	ENSLACG00000012399	REXO4	85	50.529	Latimeria_chalumnae
ENSRNOG00000027867	Rexo4	83	52.137	ENSLOCG00000003577	rexo4	79	52.394	Lepisosteus_oculatus
ENSRNOG00000027867	Rexo4	98	58.993	ENSLAFG00000011274	REXO4	99	58.057	Loxodonta_africana
ENSRNOG00000027867	Rexo4	98	67.961	ENSMFAG00000042425	REXO4	96	67.718	Macaca_fascicularis
ENSRNOG00000027867	Rexo4	98	67.718	ENSMMUG00000000935	REXO4	96	67.476	Macaca_mulatta
ENSRNOG00000027867	Rexo4	98	67.718	ENSMNEG00000031604	REXO4	96	67.476	Macaca_nemestrina
ENSRNOG00000027867	Rexo4	98	67.476	ENSMLEG00000037716	REXO4	96	67.233	Mandrillus_leucophaeus
ENSRNOG00000027867	Rexo4	84	49.296	ENSMAMG00000011251	rexo4	82	49.714	Mastacembelus_armatus
ENSRNOG00000027867	Rexo4	85	51.515	ENSMZEG00005012336	rexo4	83	51.515	Maylandia_zebra
ENSRNOG00000027867	Rexo4	83	55.840	ENSMGAG00000006521	REXO4	97	55.840	Meleagris_gallopavo
ENSRNOG00000027867	Rexo4	100	81.553	ENSMAUG00000015137	Rexo4	96	81.553	Mesocricetus_auratus
ENSRNOG00000027867	Rexo4	97	66.584	ENSMICG00000008422	REXO4	95	67.332	Microcebus_murinus
ENSRNOG00000027867	Rexo4	100	82.683	ENSMOCG00000020607	Rexo4	95	82.683	Microtus_ochrogaster
ENSRNOG00000027867	Rexo4	85	56.486	ENSMODG00000012817	REXO4	84	56.486	Monodelphis_domestica
ENSRNOG00000027867	Rexo4	87	51.639	ENSMALG00000019705	rexo4	83	51.639	Monopterus_albus
ENSRNOG00000027867	Rexo4	99	86.453	MGP_CAROLIEiJ_G0023332	-	99	86.453	Mus_caroli
ENSRNOG00000027867	Rexo4	99	85.679	ENSMUSG00000052406	Rexo4	99	85.679	Mus_musculus
ENSRNOG00000027867	Rexo4	100	84.634	MGP_PahariEiJ_G0024789	Rexo4	100	85.366	Mus_pahari
ENSRNOG00000027867	Rexo4	99	85.926	MGP_SPRETEiJ_G0024249	-	99	85.926	Mus_spretus
ENSRNOG00000027867	Rexo4	82	65.982	ENSMPUG00000012315	REXO4	97	65.982	Mustela_putorius_furo
ENSRNOG00000027867	Rexo4	100	71.394	ENSNGAG00000010700	Rexo4	100	71.394	Nannospalax_galili
ENSRNOG00000027867	Rexo4	85	50.407	ENSNBRG00000011712	rexo4	83	50.407	Neolamprologus_brichardi
ENSRNOG00000027867	Rexo4	99	67.229	ENSNLEG00000013130	-	97	67.229	Nomascus_leucogenys
ENSRNOG00000027867	Rexo4	99	63.350	ENSNLEG00000007556	-	88	68.056	Nomascus_leucogenys
ENSRNOG00000027867	Rexo4	85	44.818	ENSMEUG00000006513	-	86	44.818	Notamacropus_eugenii
ENSRNOG00000027867	Rexo4	82	66.766	ENSODEG00000015721	REXO4	97	66.766	Octodon_degus
ENSRNOG00000027867	Rexo4	87	50.954	ENSONIG00000020052	rexo4	85	50.400	Oreochromis_niloticus
ENSRNOG00000027867	Rexo4	89	55.145	ENSOANG00000002453	REXO4	96	55.145	Ornithorhynchus_anatinus
ENSRNOG00000027867	Rexo4	85	51.705	ENSORLG00000006904	rexo4	82	51.705	Oryzias_latipes
ENSRNOG00000027867	Rexo4	85	51.420	ENSORLG00020013768	rexo4	82	51.420	Oryzias_latipes_hni
ENSRNOG00000027867	Rexo4	92	47.558	ENSORLG00015012070	rexo4	82	50.284	Oryzias_latipes_hsok
ENSRNOG00000027867	Rexo4	85	51.389	ENSOMEG00000018327	rexo4	81	51.389	Oryzias_melastigma
ENSRNOG00000027867	Rexo4	97	66.250	ENSOGAG00000014040	REXO4	97	66.833	Otolemur_garnettii
ENSRNOG00000027867	Rexo4	99	68.599	ENSPPAG00000027911	REXO4	97	68.357	Pan_paniscus
ENSRNOG00000027867	Rexo4	97	66.416	ENSPPRG00000002894	REXO4	90	68.378	Panthera_pardus
ENSRNOG00000027867	Rexo4	94	57.841	ENSPTIG00000012007	REXO4	87	58.981	Panthera_tigris_altaica
ENSRNOG00000027867	Rexo4	99	68.599	ENSPTRG00000023363	REXO4	97	68.357	Pan_troglodytes
ENSRNOG00000027867	Rexo4	98	67.718	ENSPANG00000026040	REXO4	96	67.476	Papio_anubis
ENSRNOG00000027867	Rexo4	83	51.989	ENSPKIG00000024761	rexo4	81	51.989	Paramormyrops_kingsleyae
ENSRNOG00000027867	Rexo4	83	56.780	ENSPSIG00000016908	REXO4	84	56.780	Pelodiscus_sinensis
ENSRNOG00000027867	Rexo4	83	48.525	ENSPMGG00000005312	rexo4	80	48.525	Periophthalmus_magnuspinnatus
ENSRNOG00000027867	Rexo4	100	82.439	ENSPEMG00000017982	Rexo4	100	82.439	Peromyscus_maniculatus_bairdii
ENSRNOG00000027867	Rexo4	95	54.634	ENSPCIG00000017379	REXO4	85	56.568	Phascolarctos_cinereus
ENSRNOG00000027867	Rexo4	85	50.427	ENSPFOG00000017751	rexo4	83	50.568	Poecilia_formosa
ENSRNOG00000027867	Rexo4	85	50.857	ENSPLAG00000010487	rexo4	83	50.712	Poecilia_latipinna
ENSRNOG00000027867	Rexo4	85	50.430	ENSPMEG00000020767	rexo4	83	47.802	Poecilia_mexicana
ENSRNOG00000027867	Rexo4	85	50.286	ENSPREG00000021841	rexo4	83	50.142	Poecilia_reticulata
ENSRNOG00000027867	Rexo4	99	67.225	ENSPPYG00000019735	REXO4	98	66.986	Pongo_abelii
ENSRNOG00000027867	Rexo4	89	60.598	ENSPCAG00000010581	REXO4	87	60.598	Procavia_capensis
ENSRNOG00000027867	Rexo4	91	68.700	ENSPCOG00000025466	REXO4	95	67.750	Propithecus_coquereli
ENSRNOG00000027867	Rexo4	95	58.312	ENSPVAG00000001429	REXO4	87	59.669	Pteropus_vampyrus
ENSRNOG00000027867	Rexo4	85	50.136	ENSPNYG00000013712	rexo4	83	50.136	Pundamilia_nyererei
ENSRNOG00000027867	Rexo4	84	50.276	ENSPNAG00000019227	rexo4	80	50.276	Pygocentrus_nattereri
ENSRNOG00000027867	Rexo4	99	67.548	ENSRBIG00000037515	REXO4	97	66.587	Rhinopithecus_bieti
ENSRNOG00000027867	Rexo4	99	67.308	ENSRROG00000028864	REXO4	97	66.346	Rhinopithecus_roxellana
ENSRNOG00000027867	Rexo4	99	55.797	ENSSBOG00000032587	REXO4	97	56.039	Saimiri_boliviensis_boliviensis
ENSRNOG00000027867	Rexo4	85	57.983	ENSSHAG00000005827	REXO4	92	56.989	Sarcophilus_harrisii
ENSRNOG00000027867	Rexo4	51	70.561	ENSSFOG00015017394	rexo4	59	70.561	Scleropages_formosus
ENSRNOG00000027867	Rexo4	84	50.565	ENSSMAG00000015441	rexo4	80	50.565	Scophthalmus_maximus
ENSRNOG00000027867	Rexo4	84	50.411	ENSSDUG00000023346	rexo4	80	50.411	Seriola_dumerili
ENSRNOG00000027867	Rexo4	84	51.695	ENSSLDG00000011085	rexo4	81	51.695	Seriola_lalandi_dorsalis
ENSRNOG00000027867	Rexo4	85	52.846	ENSSPUG00000015868	REXO4	84	52.846	Sphenodon_punctatus
ENSRNOG00000027867	Rexo4	83	51.695	ENSSPAG00000007221	rexo4	81	51.695	Stegastes_partitus
ENSRNOG00000027867	Rexo4	96	63.772	ENSSSCG00000023173	REXO4	95	62.779	Sus_scrofa
ENSRNOG00000027867	Rexo4	88	53.495	ENSTGUG00000005537	REXO4	93	52.520	Taeniopygia_guttata
ENSRNOG00000027867	Rexo4	83	50.997	ENSTRUG00000013225	rexo4	86	50.000	Takifugu_rubripes
ENSRNOG00000027867	Rexo4	87	50.549	ENSTNIG00000005873	rexo4	99	50.549	Tetraodon_nigroviridis
ENSRNOG00000027867	Rexo4	66	80.925	ENSTTRG00000007681	-	99	55.263	Tursiops_truncatus
ENSRNOG00000027867	Rexo4	92	67.192	ENSUAMG00000018676	REXO4	88	68.011	Ursus_americanus
ENSRNOG00000027867	Rexo4	86	62.185	ENSUMAG00000023164	REXO4	97	62.185	Ursus_maritimus
ENSRNOG00000027867	Rexo4	97	66.173	ENSVVUG00000027337	REXO4	87	68.717	Vulpes_vulpes
ENSRNOG00000027867	Rexo4	72	50.658	ENSXETG00000023096	rexo4	83	51.316	Xenopus_tropicalis
ENSRNOG00000027867	Rexo4	85	49.718	ENSXMAG00000013686	rexo4	86	49.858	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000726	non-recombinational repair	-	IEA	Process
GO:0000726	non-recombinational repair	-	ISO	Process
GO:0000737	DNA catabolic process, endonucleolytic	-	IEA	Process
GO:0000737	DNA catabolic process, endonucleolytic	-	ISO	Process
GO:0000738	DNA catabolic process, exonucleolytic	-	IEA	Process
GO:0000738	DNA catabolic process, exonucleolytic	-	ISO	Process
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003713	transcription coactivator activity	-	IEA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0004519	endonuclease activity	-	IEA	Function
GO:0004519	endonuclease activity	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0008408	3'-5' exonuclease activity	-	IEA	Function
GO:0008408	3'-5' exonuclease activity	-	ISO	Function
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process