EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRNOG00000027888 (Gene tree)
Gene ID: 288176
Gene Symbol: Cmss1
Alias: LOC288176|MGC108788|RGD1309437
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 26414 bases
Position: chr11:45304068-45330481
Accession: 1309437
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000031451	CMS1	PF14617.6	4.7e-32	1	1
ENSRNOP00000031451	DEAD	PF00270.29	1.2e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000031464	-	970	-	ENSRNOP00000031451	257 (aa)	-	A0A0H2UHT9

Gene Model

Click here to download ENSRNOG00000027888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000027888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000027888	Cmss1	100	81.538	ENSG00000184220	CMSS1	99	87.654	Homo_sapiens
ENSRNOG00000027888	Cmss1	79	64.356	ENSAPOG00000010604	cmss1	92	59.149	Acanthochromis_polyacanthus
ENSRNOG00000027888	Cmss1	99	80.769	ENSAMEG00000004092	CMSS1	100	80.769	Ailuropoda_melanoleuca
ENSRNOG00000027888	Cmss1	79	53.960	ENSACIG00000021854	cmss1	75	53.960	Amphilophus_citrinellus
ENSRNOG00000027888	Cmss1	79	63.861	ENSAOCG00000013361	cmss1	70	63.861	Amphiprion_ocellaris
ENSRNOG00000027888	Cmss1	79	63.861	ENSAPEG00000005829	cmss1	70	63.861	Amphiprion_percula
ENSRNOG00000027888	Cmss1	93	57.613	ENSATEG00000008209	cmss1	92	57.200	Anabas_testudineus
ENSRNOG00000027888	Cmss1	89	68.261	ENSAPLG00000010542	CMSS1	100	68.261	Anas_platyrhynchos
ENSRNOG00000027888	Cmss1	99	64.662	ENSACAG00000011065	CMSS1	97	64.662	Anolis_carolinensis
ENSRNOG00000027888	Cmss1	100	79.693	ENSANAG00000023565	CMSS1	99	79.693	Aotus_nancymaae
ENSRNOG00000027888	Cmss1	79	61.881	ENSACLG00000027294	cmss1	69	61.881	Astatotilapia_calliptera
ENSRNOG00000027888	Cmss1	88	52.609	ENSAMXG00000002046	cmss1	84	50.813	Astyanax_mexicanus
ENSRNOG00000027888	Cmss1	96	82.000	ENSBTAG00000013663	CMSS1	93	82.101	Bos_taurus
ENSRNOG00000027888	Cmss1	100	80.843	ENSCJAG00000000610	CMSS1	99	80.769	Callithrix_jacchus
ENSRNOG00000027888	Cmss1	100	82.308	ENSCAFG00000009230	CMSS1	94	82.308	Canis_familiaris
ENSRNOG00000027888	Cmss1	89	77.155	ENSCAFG00020024156	-	73	77.155	Canis_lupus_dingo
ENSRNOG00000027888	Cmss1	99	82.879	ENSCAFG00020009464	-	93	82.879	Canis_lupus_dingo
ENSRNOG00000027888	Cmss1	99	81.712	ENSCHIG00000013003	CMSS1	93	81.712	Capra_hircus
ENSRNOG00000027888	Cmss1	100	79.615	ENSTSYG00000009266	CMSS1	99	79.615	Carlito_syrichta
ENSRNOG00000027888	Cmss1	87	67.391	ENSCAPG00000013584	CMSS1	88	73.333	Cavia_aperea
ENSRNOG00000027888	Cmss1	99	79.151	ENSCPOG00000014680	CMSS1	92	79.151	Cavia_porcellus
ENSRNOG00000027888	Cmss1	100	81.226	ENSCCAG00000034685	CMSS1	99	81.226	Cebus_capucinus
ENSRNOG00000027888	Cmss1	100	82.308	ENSCATG00000031980	CMSS1	99	81.923	Cercocebus_atys
ENSRNOG00000027888	Cmss1	89	83.913	ENSCLAG00000011241	CMSS1	98	83.913	Chinchilla_lanigera
ENSRNOG00000027888	Cmss1	94	83.265	ENSCSAG00000006024	CMSS1	99	83.265	Chlorocebus_sabaeus
ENSRNOG00000027888	Cmss1	99	63.035	ENSCHOG00000012098	CMSS1	93	63.035	Choloepus_hoffmanni
ENSRNOG00000027888	Cmss1	77	42.211	ENSCING00000014848	-	99	43.316	Ciona_intestinalis
ENSRNOG00000027888	Cmss1	100	81.923	ENSCANG00000031337	CMSS1	99	81.923	Colobus_angolensis_palliatus
ENSRNOG00000027888	Cmss1	99	85.714	ENSCGRG00001014305	Cmss1	93	87.259	Cricetulus_griseus_chok1gshd
ENSRNOG00000027888	Cmss1	99	87.549	ENSCGRG00000006722	Cmss1	99	87.549	Cricetulus_griseus_crigri
ENSRNOG00000027888	Cmss1	79	62.376	ENSCSEG00000004958	cmss1	69	62.376	Cynoglossus_semilaevis
ENSRNOG00000027888	Cmss1	79	61.386	ENSCVAG00000005039	cmss1	86	55.870	Cyprinodon_variegatus
ENSRNOG00000027888	Cmss1	88	51.948	ENSDARG00000112579	cmss1	79	53.680	Danio_rerio
ENSRNOG00000027888	Cmss1	100	80.620	ENSDNOG00000040418	CMSS1	92	80.233	Dasypus_novemcinctus
ENSRNOG00000027888	Cmss1	99	81.467	ENSDORG00000010461	Cmss1	92	81.467	Dipodomys_ordii
ENSRNOG00000027888	Cmss1	51	50.000	ENSEBUG00000002156	-	96	50.000	Eptatretus_burgeri
ENSRNOG00000027888	Cmss1	100	75.676	ENSEASG00005010966	CMSS1	98	84.651	Equus_asinus_asinus
ENSRNOG00000027888	Cmss1	97	79.447	ENSECAG00000015662	CMSS1	99	81.938	Equus_caballus
ENSRNOG00000027888	Cmss1	89	57.642	ENSEEUG00000007624	-	82	58.079	Erinaceus_europaeus
ENSRNOG00000027888	Cmss1	92	58.333	ENSELUG00000019459	cmss1	80	58.333	Esox_lucius
ENSRNOG00000027888	Cmss1	99	83.784	ENSFCAG00000044577	CMSS1	92	83.784	Felis_catus
ENSRNOG00000027888	Cmss1	89	66.087	ENSFALG00000005816	CMSS1	97	66.087	Ficedula_albicollis
ENSRNOG00000027888	Cmss1	89	82.969	ENSFDAG00000012577	CMSS1	100	82.969	Fukomys_damarensis
ENSRNOG00000027888	Cmss1	88	59.565	ENSFHEG00000012008	cmss1	95	60.870	Fundulus_heteroclitus
ENSRNOG00000027888	Cmss1	79	62.376	ENSGMOG00000016729	cmss1	72	62.376	Gadus_morhua
ENSRNOG00000027888	Cmss1	100	63.035	ENSGALG00000015267	CMSS1	96	63.035	Gallus_gallus
ENSRNOG00000027888	Cmss1	80	63.592	ENSGAFG00000021217	cmss1	77	63.366	Gambusia_affinis
ENSRNOG00000027888	Cmss1	79	56.931	ENSGACG00000002798	cmss1	96	50.373	Gasterosteus_aculeatus
ENSRNOG00000027888	Cmss1	91	72.103	ENSGAGG00000019861	CMSS1	91	71.795	Gopherus_agassizii
ENSRNOG00000027888	Cmss1	100	81.923	ENSGGOG00000014125	CMSS1	99	81.923	Gorilla_gorilla
ENSRNOG00000027888	Cmss1	79	61.881	ENSHBUG00000008431	cmss1	71	61.881	Haplochromis_burtoni
ENSRNOG00000027888	Cmss1	96	80.645	ENSHGLG00000019481	CMSS1	99	80.645	Heterocephalus_glaber_female
ENSRNOG00000027888	Cmss1	99	79.921	ENSHGLG00100010314	CMSS1	99	79.921	Heterocephalus_glaber_male
ENSRNOG00000027888	Cmss1	79	64.356	ENSHCOG00000003222	cmss1	68	64.356	Hippocampus_comes
ENSRNOG00000027888	Cmss1	79	56.931	ENSIPUG00000011591	cmss1	70	56.931	Ictalurus_punctatus
ENSRNOG00000027888	Cmss1	99	81.712	ENSSTOG00000019366	CMSS1	92	81.081	Ictidomys_tridecemlineatus
ENSRNOG00000027888	Cmss1	100	78.927	ENSJJAG00000014894	Cmss1	90	88.119	Jaculus_jaculus
ENSRNOG00000027888	Cmss1	79	52.970	ENSKMAG00000002390	cmss1	81	52.970	Kryptolebias_marmoratus
ENSRNOG00000027888	Cmss1	79	58.128	ENSLBEG00000006298	cmss1	83	58.128	Labrus_bergylta
ENSRNOG00000027888	Cmss1	89	65.652	ENSLACG00000009293	CMSS1	100	65.217	Latimeria_chalumnae
ENSRNOG00000027888	Cmss1	89	57.456	ENSLOCG00000009391	cmss1	82	57.082	Lepisosteus_oculatus
ENSRNOG00000027888	Cmss1	89	82.533	ENSLAFG00000017509	CMSS1	100	82.533	Loxodonta_africana
ENSRNOG00000027888	Cmss1	100	81.923	ENSMFAG00000045006	CMSS1	99	81.923	Macaca_fascicularis
ENSRNOG00000027888	Cmss1	100	81.538	ENSMMUG00000002939	CMSS1	98	83.710	Macaca_mulatta
ENSRNOG00000027888	Cmss1	100	81.538	ENSMNEG00000031315	CMSS1	99	81.538	Macaca_nemestrina
ENSRNOG00000027888	Cmss1	100	81.538	ENSMLEG00000033660	CMSS1	99	81.538	Mandrillus_leucophaeus
ENSRNOG00000027888	Cmss1	79	61.386	ENSMAMG00000017176	cmss1	89	55.000	Mastacembelus_armatus
ENSRNOG00000027888	Cmss1	79	61.881	ENSMZEG00005021886	cmss1	69	61.881	Maylandia_zebra
ENSRNOG00000027888	Cmss1	89	67.249	ENSMGAG00000014360	CMSS1	100	67.249	Meleagris_gallopavo
ENSRNOG00000027888	Cmss1	99	66.148	ENSMAUG00000020609	Cmss1	90	66.148	Mesocricetus_auratus
ENSRNOG00000027888	Cmss1	98	81.712	ENSMICG00000048977	CMSS1	98	81.712	Microcebus_murinus
ENSRNOG00000027888	Cmss1	99	86.328	ENSMOCG00000021937	Cmss1	93	86.328	Microtus_ochrogaster
ENSRNOG00000027888	Cmss1	79	60.396	ENSMMOG00000019794	cmss1	95	55.319	Mola_mola
ENSRNOG00000027888	Cmss1	98	72.222	ENSMODG00000002275	CMSS1	95	72.222	Monodelphis_domestica
ENSRNOG00000027888	Cmss1	88	59.649	ENSMALG00000004250	cmss1	78	59.649	Monopterus_albus
ENSRNOG00000027888	Cmss1	99	93.750	MGP_CAROLIEiJ_G0020824	Cmss1	93	93.750	Mus_caroli
ENSRNOG00000027888	Cmss1	99	94.922	ENSMUSG00000022748	Cmss1	93	94.922	Mus_musculus
ENSRNOG00000027888	Cmss1	99	93.359	MGP_PahariEiJ_G0016524	Cmss1	93	93.359	Mus_pahari
ENSRNOG00000027888	Cmss1	99	94.531	MGP_SPRETEiJ_G0021724	Cmss1	93	94.531	Mus_spretus
ENSRNOG00000027888	Cmss1	99	84.170	ENSMPUG00000011324	CMSS1	99	84.170	Mustela_putorius_furo
ENSRNOG00000027888	Cmss1	100	83.969	ENSMLUG00000001131	CMSS1	99	83.969	Myotis_lucifugus
ENSRNOG00000027888	Cmss1	100	84.231	ENSNGAG00000020316	Cmss1	93	84.231	Nannospalax_galili
ENSRNOG00000027888	Cmss1	79	61.386	ENSNBRG00000003095	cmss1	69	61.386	Neolamprologus_brichardi
ENSRNOG00000027888	Cmss1	100	82.692	ENSNLEG00000034172	CMSS1	99	82.692	Nomascus_leucogenys
ENSRNOG00000027888	Cmss1	89	63.755	ENSMEUG00000014505	CMSS1	100	63.755	Notamacropus_eugenii
ENSRNOG00000027888	Cmss1	100	81.154	ENSOPRG00000002986	CMSS1	93	81.154	Ochotona_princeps
ENSRNOG00000027888	Cmss1	99	65.354	ENSODEG00000009446	-	92	65.354	Octodon_degus
ENSRNOG00000027888	Cmss1	100	67.308	ENSODEG00000001853	-	93	67.308	Octodon_degus
ENSRNOG00000027888	Cmss1	99	76.772	ENSODEG00000003558	-	91	76.772	Octodon_degus
ENSRNOG00000027888	Cmss1	99	80.156	ENSODEG00000005226	-	92	80.156	Octodon_degus
ENSRNOG00000027888	Cmss1	79	60.891	ENSONIG00000006678	cmss1	77	60.891	Oreochromis_niloticus
ENSRNOG00000027888	Cmss1	100	70.543	ENSOANG00000007529	CMSS1	100	74.249	Ornithorhynchus_anatinus
ENSRNOG00000027888	Cmss1	100	82.308	ENSOCUG00000025366	CMSS1	94	82.308	Oryctolagus_cuniculus
ENSRNOG00000027888	Cmss1	79	62.376	ENSORLG00000020340	cmss1	71	62.376	Oryzias_latipes
ENSRNOG00000027888	Cmss1	82	54.976	ENSORLG00020012235	cmss1	85	54.950	Oryzias_latipes_hni
ENSRNOG00000027888	Cmss1	79	55.941	ENSORLG00015015551	cmss1	75	55.941	Oryzias_latipes_hsok
ENSRNOG00000027888	Cmss1	88	60.444	ENSOMEG00000012555	cmss1	88	57.087	Oryzias_melastigma
ENSRNOG00000027888	Cmss1	89	83.406	ENSOGAG00000002045	CMSS1	100	83.406	Otolemur_garnettii
ENSRNOG00000027888	Cmss1	99	81.395	ENSOARG00000017899	CMSS1	88	81.395	Ovis_aries
ENSRNOG00000027888	Cmss1	99	82.239	ENSPPAG00000038515	CMSS1	95	82.239	Pan_paniscus
ENSRNOG00000027888	Cmss1	99	82.625	ENSPPRG00000016767	CMSS1	92	82.625	Panthera_pardus
ENSRNOG00000027888	Cmss1	99	82.239	ENSPTIG00000018274	CMSS1	92	82.239	Panthera_tigris_altaica
ENSRNOG00000027888	Cmss1	100	81.154	ENSPTRG00000015157	CMSS1	99	82.857	Pan_troglodytes
ENSRNOG00000027888	Cmss1	99	80.078	ENSPANG00000019980	CMSS1	99	80.078	Papio_anubis
ENSRNOG00000027888	Cmss1	88	60.000	ENSPKIG00000012609	cmss1	90	57.613	Paramormyrops_kingsleyae
ENSRNOG00000027888	Cmss1	89	73.043	ENSPSIG00000003849	CMSS1	100	73.043	Pelodiscus_sinensis
ENSRNOG00000027888	Cmss1	91	57.203	ENSPMGG00000010286	cmss1	99	58.051	Periophthalmus_magnuspinnatus
ENSRNOG00000027888	Cmss1	100	88.077	ENSPEMG00000016384	Cmss1	92	88.417	Peromyscus_maniculatus_bairdii
ENSRNOG00000027888	Cmss1	79	52.941	ENSPMAG00000001146	cmss1	99	53.465	Petromyzon_marinus
ENSRNOG00000027888	Cmss1	100	69.697	ENSPCIG00000015656	CMSS1	99	69.697	Phascolarctos_cinereus
ENSRNOG00000027888	Cmss1	79	62.871	ENSPFOG00000016849	cmss1	71	62.871	Poecilia_formosa
ENSRNOG00000027888	Cmss1	79	62.376	ENSPLAG00000008323	cmss1	71	62.376	Poecilia_latipinna
ENSRNOG00000027888	Cmss1	79	62.871	ENSPMEG00000021020	cmss1	70	62.871	Poecilia_mexicana
ENSRNOG00000027888	Cmss1	92	58.678	ENSPREG00000007618	cmss1	82	58.678	Poecilia_reticulata
ENSRNOG00000027888	Cmss1	99	81.853	ENSPPYG00000013606	CMSS1	95	81.853	Pongo_abelii
ENSRNOG00000027888	Cmss1	98	82.101	ENSPCOG00000020035	CMSS1	98	82.101	Propithecus_coquereli
ENSRNOG00000027888	Cmss1	100	72.308	ENSPVAG00000017031	CMSS1	93	72.308	Pteropus_vampyrus
ENSRNOG00000027888	Cmss1	68	64.205	ENSPNYG00000013428	cmss1	65	64.205	Pundamilia_nyererei
ENSRNOG00000027888	Cmss1	88	53.043	ENSPNAG00000007912	cmss1	78	53.043	Pygocentrus_nattereri
ENSRNOG00000027888	Cmss1	100	80.769	ENSRBIG00000037931	CMSS1	99	80.769	Rhinopithecus_bieti
ENSRNOG00000027888	Cmss1	100	80.769	ENSRROG00000042910	CMSS1	99	80.769	Rhinopithecus_roxellana
ENSRNOG00000027888	Cmss1	100	80.843	ENSSBOG00000030980	CMSS1	99	80.843	Saimiri_boliviensis_boliviensis
ENSRNOG00000027888	Cmss1	96	70.356	ENSSHAG00000009321	CMSS1	99	71.146	Sarcophilus_harrisii
ENSRNOG00000027888	Cmss1	88	60.870	ENSSFOG00015001509	cmss1	81	61.441	Scleropages_formosus
ENSRNOG00000027888	Cmss1	79	62.871	ENSSMAG00000001653	cmss1	69	62.871	Scophthalmus_maximus
ENSRNOG00000027888	Cmss1	89	60.345	ENSSDUG00000007719	cmss1	84	58.921	Seriola_dumerili
ENSRNOG00000027888	Cmss1	80	63.592	ENSSLDG00000012300	cmss1	80	57.143	Seriola_lalandi_dorsalis
ENSRNOG00000027888	Cmss1	99	67.181	ENSSARG00000003584	CMSS1	92	67.181	Sorex_araneus
ENSRNOG00000027888	Cmss1	88	68.282	ENSSPUG00000003865	CMSS1	100	68.282	Sphenodon_punctatus
ENSRNOG00000027888	Cmss1	80	64.078	ENSSPAG00000019182	cmss1	82	55.133	Stegastes_partitus
ENSRNOG00000027888	Cmss1	99	83.398	ENSSSCG00000011970	CMSS1	92	83.398	Sus_scrofa
ENSRNOG00000027888	Cmss1	89	66.087	ENSTGUG00000013635	CMSS1	100	66.087	Taeniopygia_guttata
ENSRNOG00000027888	Cmss1	79	60.891	ENSTRUG00000015265	cmss1	72	60.891	Takifugu_rubripes
ENSRNOG00000027888	Cmss1	79	56.436	ENSTNIG00000002880	cmss1	85	52.340	Tetraodon_nigroviridis
ENSRNOG00000027888	Cmss1	89	62.445	ENSTBEG00000016722	CMSS1	81	62.445	Tupaia_belangeri
ENSRNOG00000027888	Cmss1	99	78.764	ENSTTRG00000001562	CMSS1	92	78.764	Tursiops_truncatus
ENSRNOG00000027888	Cmss1	100	82.308	ENSUAMG00000024209	CMSS1	91	89.604	Ursus_americanus
ENSRNOG00000027888	Cmss1	100	81.538	ENSUMAG00000001983	CMSS1	99	82.101	Ursus_maritimus
ENSRNOG00000027888	Cmss1	89	68.559	ENSVPAG00000000263	CMSS1	57	90.625	Vicugna_pacos
ENSRNOG00000027888	Cmss1	95	82.591	ENSVVUG00000021647	-	100	82.591	Vulpes_vulpes
ENSRNOG00000027888	Cmss1	88	82.743	ENSVVUG00000007776	-	89	82.743	Vulpes_vulpes
ENSRNOG00000027888	Cmss1	79	64.356	ENSXETG00000011858	cmss1	72	64.356	Xenopus_tropicalis
ENSRNOG00000027888	Cmss1	80	63.107	ENSXCOG00000018724	cmss1	69	62.871	Xiphophorus_couchianus
ENSRNOG00000027888	Cmss1	80	63.107	ENSXMAG00000011243	cmss1	76	62.871	Xiphophorus_maculatus