EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000027962 (Gene tree)
Gene ID: 360855
Gene Symbol: Smg7
Alias: LOC360855|RGD1310761
Full Name: SMG7 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 62838 bases
Position: chr13:70258915-70321752
Accession: 1310761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000075847	EST1	PF10374.9	4.1e-25	1	1
ENSRNOP00000075794	EST1	PF10374.9	7.2e-25	1	1
ENSRNOP00000075818	EST1	PF10374.9	7.3e-25	1	1
ENSRNOP00000075882	EST1	PF10374.9	7.3e-25	1	1
ENSRNOP00000048900	EST1	PF10374.9	7.5e-25	1	1
ENSRNOP00000075847	EST1_DNA_bind	PF10373.9	2e-55	1	1
ENSRNOP00000075794	EST1_DNA_bind	PF10373.9	4.3e-55	1	1
ENSRNOP00000075818	EST1_DNA_bind	PF10373.9	4.4e-55	1	1
ENSRNOP00000075882	EST1_DNA_bind	PF10373.9	4.4e-55	1	1
ENSRNOP00000048900	EST1_DNA_bind	PF10373.9	4.5e-55	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000092397	-	5772	-	ENSRNOP00000075794	1137 (aa)	-	A0A0U1RRS5
ENSRNOT00000092269	-	3970	-	ENSRNOP00000075882	1145 (aa)	-	A0A0U1RS03
ENSRNOT00000092649	-	2474	-	ENSRNOP00000075847	755 (aa)	-	A0A0U1RRX2
ENSRNOT00000092336	-	3720	XM_006250006	ENSRNOP00000075818	1141 (aa)	XP_006250068	A0A0U1RRU7
ENSRNOT00000044235	-	5794	XM_006250005	ENSRNOP00000048900	1166 (aa)	XP_006250067	D4ACJ3

Gene Model

Click here to download ENSRNOG00000027962's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000027962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000027962	Smg7	100	96.296	ENSG00000116698	SMG7	100	96.296	Homo_sapiens
ENSRNOG00000027962	Smg7	89	73.353	ENSAPOG00000009611	smg7	95	73.979	Acanthochromis_polyacanthus
ENSRNOG00000027962	Smg7	100	94.328	ENSAMEG00000002357	SMG7	100	94.241	Ailuropoda_melanoleuca
ENSRNOG00000027962	Smg7	100	61.202	ENSACIG00000015152	smg7	98	67.727	Amphilophus_citrinellus
ENSRNOG00000027962	Smg7	99	66.463	ENSAOCG00000013538	smg7	99	66.325	Amphiprion_ocellaris
ENSRNOG00000027962	Smg7	99	66.382	ENSAPEG00000007851	smg7	99	66.183	Amphiprion_percula
ENSRNOG00000027962	Smg7	99	65.625	ENSATEG00000006931	smg7	99	65.988	Anabas_testudineus
ENSRNOG00000027962	Smg7	100	86.801	ENSAPLG00000015811	SMG7	100	86.801	Anas_platyrhynchos
ENSRNOG00000027962	Smg7	100	85.986	ENSACAG00000014989	SMG7	100	84.307	Anolis_carolinensis
ENSRNOG00000027962	Smg7	100	96.561	ENSANAG00000028114	SMG7	100	94.552	Aotus_nancymaae
ENSRNOG00000027962	Smg7	100	64.148	ENSACLG00000022079	smg7	99	65.638	Astatotilapia_calliptera
ENSRNOG00000027962	Smg7	100	68.657	ENSAMXG00000020809	smg7	99	67.448	Astyanax_mexicanus
ENSRNOG00000027962	Smg7	100	94.974	ENSBTAG00000008003	SMG7	100	94.025	Bos_taurus
ENSRNOG00000027962	Smg7	100	96.296	ENSCJAG00000005135	SMG7	100	95.458	Callithrix_jacchus
ENSRNOG00000027962	Smg7	100	94.974	ENSCAFG00000013276	SMG7	99	94.859	Canis_familiaris
ENSRNOG00000027962	Smg7	100	94.974	ENSCAFG00020015475	SMG7	99	94.859	Canis_lupus_dingo
ENSRNOG00000027962	Smg7	100	95.370	ENSCHIG00000018192	SMG7	99	94.797	Capra_hircus
ENSRNOG00000027962	Smg7	100	95.370	ENSTSYG00000002667	SMG7	100	94.415	Carlito_syrichta
ENSRNOG00000027962	Smg7	100	95.116	ENSCPOG00000008906	SMG7	100	95.030	Cavia_porcellus
ENSRNOG00000027962	Smg7	100	94.764	ENSCCAG00000028596	SMG7	100	94.764	Cebus_capucinus
ENSRNOG00000027962	Smg7	100	96.429	ENSCATG00000011063	SMG7	100	95.113	Cercocebus_atys
ENSRNOG00000027962	Smg7	100	96.296	ENSCLAG00000010751	SMG7	100	95.478	Chinchilla_lanigera
ENSRNOG00000027962	Smg7	100	96.296	ENSCSAG00000012654	SMG7	99	95.887	Chlorocebus_sabaeus
ENSRNOG00000027962	Smg7	96	91.907	ENSCHOG00000010522	SMG7	93	87.405	Choloepus_hoffmanni
ENSRNOG00000027962	Smg7	100	89.739	ENSCPBG00000015724	SMG7	100	89.405	Chrysemys_picta_bellii
ENSRNOG00000027962	Smg7	100	95.026	ENSCANG00000015680	SMG7	100	95.026	Colobus_angolensis_palliatus
ENSRNOG00000027962	Smg7	100	97.897	ENSCGRG00001013705	Smg7	100	97.897	Cricetulus_griseus_chok1gshd
ENSRNOG00000027962	Smg7	100	97.881	ENSCGRG00000018401	Smg7	100	97.911	Cricetulus_griseus_crigri
ENSRNOG00000027962	Smg7	97	69.652	ENSCVAG00000011842	smg7	99	69.652	Cyprinodon_variegatus
ENSRNOG00000027962	Smg7	99	67.618	ENSDARG00000060767	smg7	99	66.926	Danio_rerio
ENSRNOG00000027962	Smg7	100	95.271	ENSDORG00000007331	Smg7	100	95.304	Dipodomys_ordii
ENSRNOG00000027962	Smg7	100	95.503	ENSETEG00000002654	SMG7	100	94.299	Echinops_telfairi
ENSRNOG00000027962	Smg7	100	96.561	ENSEASG00005006524	SMG7	100	96.322	Equus_asinus_asinus
ENSRNOG00000027962	Smg7	100	96.561	ENSECAG00000004313	SMG7	99	97.802	Equus_caballus
ENSRNOG00000027962	Smg7	100	95.238	ENSEEUG00000002024	SMG7	94	94.213	Erinaceus_europaeus
ENSRNOG00000027962	Smg7	90	76.912	ENSELUG00000010293	smg7	99	65.548	Esox_lucius
ENSRNOG00000027962	Smg7	100	95.238	ENSFCAG00000010900	SMG7	100	95.052	Felis_catus
ENSRNOG00000027962	Smg7	100	84.389	ENSFALG00000003047	SMG7	100	82.413	Ficedula_albicollis
ENSRNOG00000027962	Smg7	100	96.159	ENSFDAG00000012121	SMG7	99	95.811	Fukomys_damarensis
ENSRNOG00000027962	Smg7	99	64.576	ENSFHEG00000011073	smg7	99	63.582	Fundulus_heteroclitus
ENSRNOG00000027962	Smg7	89	73.320	ENSGMOG00000004916	smg7	92	67.591	Gadus_morhua
ENSRNOG00000027962	Smg7	100	87.511	ENSGALG00000004667	SMG7	100	87.511	Gallus_gallus
ENSRNOG00000027962	Smg7	99	65.019	ENSGAFG00000019000	smg7	99	63.706	Gambusia_affinis
ENSRNOG00000027962	Smg7	98	67.145	ENSGACG00000001634	smg7	99	64.572	Gasterosteus_aculeatus
ENSRNOG00000027962	Smg7	100	96.429	ENSGGOG00000002342	SMG7	100	95.201	Gorilla_gorilla
ENSRNOG00000027962	Smg7	100	64.831	ENSHBUG00000003726	smg7	97	72.222	Haplochromis_burtoni
ENSRNOG00000027962	Smg7	100	95.767	ENSHGLG00000009353	SMG7	100	95.637	Heterocephalus_glaber_female
ENSRNOG00000027962	Smg7	100	94.728	ENSHGLG00100009637	-	100	94.728	Heterocephalus_glaber_male
ENSRNOG00000027962	Smg7	100	88.624	ENSHGLG00100004878	-	100	87.916	Heterocephalus_glaber_male
ENSRNOG00000027962	Smg7	99	69.173	ENSIPUG00000016997	smg7	99	67.742	Ictalurus_punctatus
ENSRNOG00000027962	Smg7	100	96.296	ENSSTOG00000000401	SMG7	100	96.261	Ictidomys_tridecemlineatus
ENSRNOG00000027962	Smg7	100	95.364	ENSJJAG00000012351	Smg7	100	95.092	Jaculus_jaculus
ENSRNOG00000027962	Smg7	93	69.154	ENSKMAG00000004900	smg7	97	69.154	Kryptolebias_marmoratus
ENSRNOG00000027962	Smg7	73	64.273	ENSLBEG00000005220	-	75	64.273	Labrus_bergylta
ENSRNOG00000027962	Smg7	99	65.895	ENSLBEG00000002983	smg7	99	65.690	Labrus_bergylta
ENSRNOG00000027962	Smg7	99	77.015	ENSLACG00000000972	SMG7	99	75.434	Latimeria_chalumnae
ENSRNOG00000027962	Smg7	100	68.755	ENSLOCG00000002010	smg7	99	68.254	Lepisosteus_oculatus
ENSRNOG00000027962	Smg7	100	96.296	ENSLAFG00000008186	SMG7	100	95.739	Loxodonta_africana
ENSRNOG00000027962	Smg7	100	96.561	ENSMFAG00000031653	SMG7	100	96.147	Macaca_fascicularis
ENSRNOG00000027962	Smg7	100	96.429	ENSMMUG00000018458	SMG7	99	96.058	Macaca_mulatta
ENSRNOG00000027962	Smg7	100	95.113	ENSMNEG00000034798	SMG7	100	95.113	Macaca_nemestrina
ENSRNOG00000027962	Smg7	100	96.429	ENSMLEG00000037170	SMG7	100	95.113	Mandrillus_leucophaeus
ENSRNOG00000027962	Smg7	98	66.912	ENSMAMG00000018733	smg7	85	65.150	Mastacembelus_armatus
ENSRNOG00000027962	Smg7	100	64.611	ENSMZEG00005015247	smg7	99	65.638	Maylandia_zebra
ENSRNOG00000027962	Smg7	99	87.202	ENSMGAG00000001561	SMG7	99	87.202	Meleagris_gallopavo
ENSRNOG00000027962	Smg7	100	98.160	ENSMAUG00000019484	Smg7	100	98.172	Mesocricetus_auratus
ENSRNOG00000027962	Smg7	100	96.429	ENSMICG00000007145	SMG7	100	95.391	Microcebus_murinus
ENSRNOG00000027962	Smg7	100	97.984	ENSMOCG00000020748	Smg7	100	97.998	Microtus_ochrogaster
ENSRNOG00000027962	Smg7	99	64.242	ENSMMOG00000001524	smg7	99	64.410	Mola_mola
ENSRNOG00000027962	Smg7	100	88.404	ENSMODG00000007139	SMG7	99	90.806	Monodelphis_domestica
ENSRNOG00000027962	Smg7	99	66.133	ENSMALG00000000061	smg7	95	68.317	Monopterus_albus
ENSRNOG00000027962	Smg7	100	98.422	MGP_CAROLIEiJ_G0014704	Smg7	100	98.433	Mus_caroli
ENSRNOG00000027962	Smg7	100	98.335	ENSMUSG00000042772	Smg7	100	98.346	Mus_musculus
ENSRNOG00000027962	Smg7	100	98.940	MGP_PahariEiJ_G0027940	Smg7	100	98.520	Mus_pahari
ENSRNOG00000027962	Smg7	100	98.422	MGP_SPRETEiJ_G0015511	Smg7	100	98.433	Mus_spretus
ENSRNOG00000027962	Smg7	100	94.974	ENSMPUG00000011732	SMG7	97	94.835	Mustela_putorius_furo
ENSRNOG00000027962	Smg7	100	95.635	ENSMLUG00000015417	SMG7	99	94.885	Myotis_lucifugus
ENSRNOG00000027962	Smg7	100	97.086	ENSNGAG00000009836	Smg7	100	96.780	Nannospalax_galili
ENSRNOG00000027962	Smg7	98	60.990	ENSNBRG00000024343	smg7	98	70.142	Neolamprologus_brichardi
ENSRNOG00000027962	Smg7	100	96.825	ENSNLEG00000018018	SMG7	100	95.462	Nomascus_leucogenys
ENSRNOG00000027962	Smg7	87	84.333	ENSMEUG00000004681	SMG7	73	91.463	Notamacropus_eugenii
ENSRNOG00000027962	Smg7	99	86.870	ENSOPRG00000013942	SMG7	96	83.668	Ochotona_princeps
ENSRNOG00000027962	Smg7	100	96.296	ENSODEG00000010390	SMG7	100	95.565	Octodon_degus
ENSRNOG00000027962	Smg7	99	64.770	ENSONIG00000000277	smg7	99	65.243	Oreochromis_niloticus
ENSRNOG00000027962	Smg7	100	90.119	ENSOANG00000000994	SMG7	100	89.814	Ornithorhynchus_anatinus
ENSRNOG00000027962	Smg7	100	91.005	ENSOCUG00000005887	SMG7	95	89.117	Oryctolagus_cuniculus
ENSRNOG00000027962	Smg7	99	64.366	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
ENSRNOG00000027962	Smg7	99	64.743	ENSORLG00020015779	smg7	99	63.613	Oryzias_latipes_hni
ENSRNOG00000027962	Smg7	99	68.325	ENSORLG00015012289	smg7	99	63.307	Oryzias_latipes_hsok
ENSRNOG00000027962	Smg7	99	65.119	ENSOMEG00000002328	smg7	99	62.969	Oryzias_melastigma
ENSRNOG00000027962	Smg7	100	96.693	ENSOGAG00000003107	SMG7	94	93.931	Otolemur_garnettii
ENSRNOG00000027962	Smg7	100	95.370	ENSOARG00000001352	SMG7	99	94.944	Ovis_aries
ENSRNOG00000027962	Smg7	100	95.288	ENSPPAG00000031619	SMG7	100	95.288	Pan_paniscus
ENSRNOG00000027962	Smg7	100	96.296	ENSPPRG00000011222	SMG7	100	94.112	Panthera_pardus
ENSRNOG00000027962	Smg7	100	96.296	ENSPTIG00000007242	SMG7	100	94.154	Panthera_tigris_altaica
ENSRNOG00000027962	Smg7	100	96.561	ENSPTRG00000001764	SMG7	100	95.288	Pan_troglodytes
ENSRNOG00000027962	Smg7	100	96.429	ENSPANG00000004520	SMG7	99	96.058	Papio_anubis
ENSRNOG00000027962	Smg7	100	65.056	ENSPKIG00000007242	smg7	99	69.458	Paramormyrops_kingsleyae
ENSRNOG00000027962	Smg7	100	90.476	ENSPSIG00000012201	SMG7	99	90.300	Pelodiscus_sinensis
ENSRNOG00000027962	Smg7	58	56.281	ENSPMGG00000021833	smg7	89	54.271	Periophthalmus_magnuspinnatus
ENSRNOG00000027962	Smg7	100	97.195	ENSPEMG00000011315	Smg7	100	97.215	Peromyscus_maniculatus_bairdii
ENSRNOG00000027962	Smg7	100	91.543	ENSPCIG00000003786	SMG7	100	91.396	Phascolarctos_cinereus
ENSRNOG00000027962	Smg7	99	64.532	ENSPFOG00000019219	smg7	99	63.149	Poecilia_formosa
ENSRNOG00000027962	Smg7	99	65.019	ENSPLAG00000001446	smg7	99	64.206	Poecilia_latipinna
ENSRNOG00000027962	Smg7	99	65.019	ENSPMEG00000005218	smg7	99	63.387	Poecilia_mexicana
ENSRNOG00000027962	Smg7	99	63.366	ENSPREG00000019039	smg7	91	61.395	Poecilia_reticulata
ENSRNOG00000027962	Smg7	100	95.255	ENSPPYG00000000427	SMG7	100	95.255	Pongo_abelii
ENSRNOG00000027962	Smg7	100	80.845	ENSPCAG00000008360	SMG7	95	83.712	Procavia_capensis
ENSRNOG00000027962	Smg7	100	96.296	ENSPCOG00000011996	SMG7	99	95.287	Propithecus_coquereli
ENSRNOG00000027962	Smg7	100	89.300	ENSPVAG00000000851	SMG7	89	90.010	Pteropus_vampyrus
ENSRNOG00000027962	Smg7	99	65.767	ENSPNYG00000007643	smg7	99	65.408	Pundamilia_nyererei
ENSRNOG00000027962	Smg7	100	69.059	ENSPNAG00000011374	smg7	98	70.352	Pygocentrus_nattereri
ENSRNOG00000027962	Smg7	100	96.429	ENSRBIG00000036316	SMG7	100	95.026	Rhinopithecus_bieti
ENSRNOG00000027962	Smg7	100	96.429	ENSRROG00000035719	SMG7	100	95.972	Rhinopithecus_roxellana
ENSRNOG00000027962	Smg7	100	96.561	ENSSBOG00000023454	SMG7	100	95.709	Saimiri_boliviensis_boliviensis
ENSRNOG00000027962	Smg7	100	91.228	ENSSHAG00000013147	SMG7	100	91.228	Sarcophilus_harrisii
ENSRNOG00000027962	Smg7	100	68.303	ENSSFOG00015017252	smg7	99	75.916	Scleropages_formosus
ENSRNOG00000027962	Smg7	100	64.621	ENSSMAG00000006067	smg7	99	65.232	Scophthalmus_maximus
ENSRNOG00000027962	Smg7	96	71.925	ENSSDUG00000017543	smg7	99	65.625	Seriola_dumerili
ENSRNOG00000027962	Smg7	99	88.261	ENSSPUG00000002064	SMG7	99	88.261	Sphenodon_punctatus
ENSRNOG00000027962	Smg7	100	65.487	ENSSPAG00000008733	smg7	100	65.749	Stegastes_partitus
ENSRNOG00000027962	Smg7	100	96.561	ENSSSCG00000015558	SMG7	100	95.709	Sus_scrofa
ENSRNOG00000027962	Smg7	99	87.412	ENSTGUG00000003928	SMG7	100	87.412	Taeniopygia_guttata
ENSRNOG00000027962	Smg7	99	66.667	ENSTNIG00000002802	smg7	99	63.797	Tetraodon_nigroviridis
ENSRNOG00000027962	Smg7	81	91.845	ENSTBEG00000003220	SMG7	75	92.405	Tupaia_belangeri
ENSRNOG00000027962	Smg7	100	96.296	ENSTTRG00000014778	SMG7	94	95.438	Tursiops_truncatus
ENSRNOG00000027962	Smg7	100	96.429	ENSUAMG00000017473	SMG7	100	91.971	Ursus_americanus
ENSRNOG00000027962	Smg7	100	96.429	ENSUMAG00000016389	SMG7	100	95.273	Ursus_maritimus
ENSRNOG00000027962	Smg7	55	95.833	ENSVPAG00000005367	-	62	95.833	Vicugna_pacos
ENSRNOG00000027962	Smg7	100	96.032	ENSVVUG00000008976	SMG7	100	96.087	Vulpes_vulpes
ENSRNOG00000027962	Smg7	100	70.207	ENSXETG00000012528	smg7	100	69.922	Xenopus_tropicalis
ENSRNOG00000027962	Smg7	99	64.932	ENSXMAG00000007123	smg7	99	64.402	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0045111	intermediate filament cytoskeleton	-	IEA	Component
GO:0045111	intermediate filament cytoskeleton	-	ISO	Component
GO:0051721	protein phosphatase 2A binding	-	IEA	Function
GO:0051721	protein phosphatase 2A binding	-	ISO	Function
GO:0070034	telomerase RNA binding	21873635.	IBA	Function