EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000028214 (Gene tree)
Gene ID: 503124
Gene Symbol: Zscan4f
Alias: LOC299652|LOC503124|RGD1561748|RGD1563625
Full Name: zinc finger and SCAN domain containing 4F
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 7470 bases
Position: chr7:17852184-17859653
Accession: 1563625
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000033865	zf-C2H2	PF00096.26	3.8e-14	1	3
ENSRNOP00000033865	zf-C2H2	PF00096.26	3.8e-14	2	3
ENSRNOP00000033865	zf-C2H2	PF00096.26	3.8e-14	3	3
ENSRNOP00000033865	zf-met	PF12874.7	3.2e-05	1	2
ENSRNOP00000033865	zf-met	PF12874.7	3.2e-05	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000030164	-	1506	XM_578644	ENSRNOP00000033865	501 (aa)	XP_578644	F1M6S3

Gene Model

Click here to download ENSRNOG00000028214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000028214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000028214	Zscan4f	98	50.405	ENSRNOG00000059074	LOC691661	96	50.405

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000028214	Zscan4f	95	44.105	ENSCHIG00000017999	-	93	44.105	Capra_hircus
ENSRNOG00000028214	Zscan4f	99	67.936	ENSMUSG00000054272	Zscan4c	99	67.936	Mus_musculus
ENSRNOG00000028214	Zscan4f	99	66.934	ENSMUSG00000090714	Zscan4d	99	66.934	Mus_musculus
ENSRNOG00000028214	Zscan4f	99	67.134	ENSMUSG00000109969	Zscan4-ps3	99	67.134	Mus_musculus
ENSRNOG00000028214	Zscan4f	99	67.936	ENSMUSG00000070828	Zscan4f	99	67.936	Mus_musculus
ENSRNOG00000028214	Zscan4f	99	67.735	ENSMUSG00000110190	Zscan4-ps2	99	67.735	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function