EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000028403 (Gene tree)
Gene ID: 310025
Gene Symbol: Ptcd2
Alias: LOC310025
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 27740 bases
Position: chr2:29570538-29598277
Accession: 1310308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000033932	MRP-S27	PF10037.9	4.1e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000034992	-	1700	XM_006231847	ENSRNOP00000033932	381 (aa)	XP_006231909	D4A9I4

Gene Model

Click here to download ENSRNOG00000028403's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000028403's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000028403	Ptcd2	100	73.629	ENSG00000049883	PTCD2	100	76.847	Homo_sapiens
ENSRNOG00000028403	Ptcd2	96	46.341	ENSAPOG00000020682	ptcd2	96	46.341	Acanthochromis_polyacanthus
ENSRNOG00000028403	Ptcd2	100	73.107	ENSAMEG00000007194	PTCD2	99	73.107	Ailuropoda_melanoleuca
ENSRNOG00000028403	Ptcd2	91	42.980	ENSACIG00000002053	ptcd2	100	42.980	Amphilophus_citrinellus
ENSRNOG00000028403	Ptcd2	97	46.216	ENSAOCG00000006616	ptcd2	94	46.216	Amphiprion_ocellaris
ENSRNOG00000028403	Ptcd2	97	46.216	ENSAPEG00000022926	ptcd2	94	46.216	Amphiprion_percula
ENSRNOG00000028403	Ptcd2	96	56.319	ENSACAG00000009747	PTCD2	93	56.319	Anolis_carolinensis
ENSRNOG00000028403	Ptcd2	100	73.629	ENSANAG00000029353	PTCD2	99	73.629	Aotus_nancymaae
ENSRNOG00000028403	Ptcd2	97	45.946	ENSACLG00000027742	ptcd2	94	45.946	Astatotilapia_calliptera
ENSRNOG00000028403	Ptcd2	86	46.341	ENSAMXG00000029404	ptcd2	88	46.341	Astyanax_mexicanus
ENSRNOG00000028403	Ptcd2	100	73.698	ENSBTAG00000014675	PTCD2	100	73.698	Bos_taurus
ENSRNOG00000028403	Ptcd2	100	72.021	ENSCJAG00000016364	PTCD2	99	72.021	Callithrix_jacchus
ENSRNOG00000028403	Ptcd2	100	73.629	ENSCAFG00000007982	PTCD2	90	73.629	Canis_familiaris
ENSRNOG00000028403	Ptcd2	91	75.723	ENSCAFG00020019147	PTCD2	97	75.723	Canis_lupus_dingo
ENSRNOG00000028403	Ptcd2	100	75.521	ENSCHIG00000017118	PTCD2	100	75.521	Capra_hircus
ENSRNOG00000028403	Ptcd2	100	71.279	ENSCPOG00000040168	PTCD2	100	71.279	Cavia_porcellus
ENSRNOG00000028403	Ptcd2	78	70.903	ENSCCAG00000021996	-	92	70.903	Cebus_capucinus
ENSRNOG00000028403	Ptcd2	100	72.324	ENSCCAG00000029389	-	99	72.324	Cebus_capucinus
ENSRNOG00000028403	Ptcd2	100	72.846	ENSCATG00000019069	PTCD2	100	72.846	Cercocebus_atys
ENSRNOG00000028403	Ptcd2	96	75.890	ENSCLAG00000000072	PTCD2	95	75.890	Chinchilla_lanigera
ENSRNOG00000028403	Ptcd2	100	72.846	ENSCSAG00000015623	PTCD2	100	72.846	Chlorocebus_sabaeus
ENSRNOG00000028403	Ptcd2	91	57.759	ENSCHOG00000010634	PTCD2	100	57.759	Choloepus_hoffmanni
ENSRNOG00000028403	Ptcd2	94	55.710	ENSCPBG00000000216	PTCD2	92	55.710	Chrysemys_picta_bellii
ENSRNOG00000028403	Ptcd2	100	71.279	ENSCANG00000035636	PTCD2	99	71.279	Colobus_angolensis_palliatus
ENSRNOG00000028403	Ptcd2	100	81.365	ENSCGRG00001015289	Ptcd2	84	81.365	Cricetulus_griseus_chok1gshd
ENSRNOG00000028403	Ptcd2	100	81.365	ENSCGRG00000006193	Ptcd2	84	81.365	Cricetulus_griseus_crigri
ENSRNOG00000028403	Ptcd2	91	47.414	ENSCVAG00000001285	ptcd2	89	47.414	Cyprinodon_variegatus
ENSRNOG00000028403	Ptcd2	93	47.191	ENSDARG00000035391	ptcd2	93	47.191	Danio_rerio
ENSRNOG00000028403	Ptcd2	100	70.757	ENSDNOG00000008719	PTCD2	100	70.757	Dasypus_novemcinctus
ENSRNOG00000028403	Ptcd2	100	75.194	ENSDORG00000004921	Ptcd2	100	75.194	Dipodomys_ordii
ENSRNOG00000028403	Ptcd2	100	65.104	ENSETEG00000016542	PTCD2	99	65.104	Echinops_telfairi
ENSRNOG00000028403	Ptcd2	100	73.766	ENSEASG00005018038	PTCD2	100	73.766	Equus_asinus_asinus
ENSRNOG00000028403	Ptcd2	100	73.766	ENSECAG00000007022	PTCD2	98	73.766	Equus_caballus
ENSRNOG00000028403	Ptcd2	100	67.624	ENSEEUG00000014031	PTCD2	99	67.624	Erinaceus_europaeus
ENSRNOG00000028403	Ptcd2	93	48.588	ENSELUG00000003584	ptcd2	92	48.588	Esox_lucius
ENSRNOG00000028403	Ptcd2	100	69.191	ENSFCAG00000045432	PTCD2	82	69.191	Felis_catus
ENSRNOG00000028403	Ptcd2	86	50.153	ENSFALG00000010299	PTCD2	99	50.153	Ficedula_albicollis
ENSRNOG00000028403	Ptcd2	100	73.107	ENSFDAG00000018461	PTCD2	100	73.107	Fukomys_damarensis
ENSRNOG00000028403	Ptcd2	92	49.148	ENSGMOG00000003637	ptcd2	91	49.148	Gadus_morhua
ENSRNOG00000028403	Ptcd2	93	49.435	ENSGALG00000038260	PTCD2	93	49.435	Gallus_gallus
ENSRNOG00000028403	Ptcd2	97	57.724	ENSGAGG00000021952	PTCD2	94	57.724	Gopherus_agassizii
ENSRNOG00000028403	Ptcd2	100	73.629	ENSGGOG00000010695	PTCD2	99	73.629	Gorilla_gorilla
ENSRNOG00000028403	Ptcd2	91	47.414	ENSHBUG00000009191	ptcd2	89	47.414	Haplochromis_burtoni
ENSRNOG00000028403	Ptcd2	100	72.324	ENSHGLG00000001234	PTCD2	100	72.324	Heterocephalus_glaber_female
ENSRNOG00000028403	Ptcd2	100	72.324	ENSHGLG00100015419	PTCD2	100	72.324	Heterocephalus_glaber_male
ENSRNOG00000028403	Ptcd2	95	48.077	ENSHCOG00000001703	ptcd2	92	48.077	Hippocampus_comes
ENSRNOG00000028403	Ptcd2	88	44.776	ENSIPUG00000006080	ptcd2	91	45.272	Ictalurus_punctatus
ENSRNOG00000028403	Ptcd2	99	75.853	ENSSTOG00000006596	PTCD2	99	75.853	Ictidomys_tridecemlineatus
ENSRNOG00000028403	Ptcd2	100	77.285	ENSJJAG00000024388	Ptcd2	100	77.285	Jaculus_jaculus
ENSRNOG00000028403	Ptcd2	93	43.059	ENSKMAG00000009329	ptcd2	92	43.059	Kryptolebias_marmoratus
ENSRNOG00000028403	Ptcd2	97	44.772	ENSLBEG00000024871	ptcd2	94	44.772	Labrus_bergylta
ENSRNOG00000028403	Ptcd2	100	52.880	ENSLOCG00000011122	ptcd2	99	52.880	Lepisosteus_oculatus
ENSRNOG00000028403	Ptcd2	81	73.955	ENSLAFG00000004115	PTCD2	100	73.955	Loxodonta_africana
ENSRNOG00000028403	Ptcd2	100	72.846	ENSMFAG00000031516	PTCD2	99	72.846	Macaca_fascicularis
ENSRNOG00000028403	Ptcd2	100	72.846	ENSMNEG00000007537	PTCD2	100	72.846	Macaca_nemestrina
ENSRNOG00000028403	Ptcd2	100	73.107	ENSMLEG00000031093	PTCD2	99	73.107	Mandrillus_leucophaeus
ENSRNOG00000028403	Ptcd2	96	47.397	ENSMAMG00000018529	ptcd2	94	47.397	Mastacembelus_armatus
ENSRNOG00000028403	Ptcd2	97	45.946	ENSMZEG00005003625	ptcd2	94	45.946	Maylandia_zebra
ENSRNOG00000028403	Ptcd2	91	49.713	ENSMGAG00000005033	PTCD2	100	49.713	Meleagris_gallopavo
ENSRNOG00000028403	Ptcd2	100	65.092	ENSMAUG00000020253	Ptcd2	100	65.092	Mesocricetus_auratus
ENSRNOG00000028403	Ptcd2	100	74.935	ENSMICG00000004535	PTCD2	99	74.935	Microcebus_murinus
ENSRNOG00000028403	Ptcd2	100	83.465	ENSMOCG00000019985	Ptcd2	100	83.465	Microtus_ochrogaster
ENSRNOG00000028403	Ptcd2	93	58.192	ENSMODG00000001695	PTCD2	92	58.192	Monodelphis_domestica
ENSRNOG00000028403	Ptcd2	91	47.701	ENSMALG00000022372	ptcd2	91	47.701	Monopterus_albus
ENSRNOG00000028403	Ptcd2	100	87.664	MGP_CAROLIEiJ_G0018829	Ptcd2	100	87.664	Mus_caroli
ENSRNOG00000028403	Ptcd2	100	87.664	ENSMUSG00000021650	Ptcd2	100	87.664	Mus_musculus
ENSRNOG00000028403	Ptcd2	100	88.189	MGP_PahariEiJ_G0015904	Ptcd2	100	88.189	Mus_pahari
ENSRNOG00000028403	Ptcd2	100	87.927	MGP_SPRETEiJ_G0019711	Ptcd2	100	87.927	Mus_spretus
ENSRNOG00000028403	Ptcd2	100	74.674	ENSMPUG00000014401	PTCD2	100	74.674	Mustela_putorius_furo
ENSRNOG00000028403	Ptcd2	100	71.802	ENSMLUG00000007374	PTCD2	99	71.802	Myotis_lucifugus
ENSRNOG00000028403	Ptcd2	100	78.329	ENSNGAG00000005027	Ptcd2	100	78.329	Nannospalax_galili
ENSRNOG00000028403	Ptcd2	87	46.364	ENSNBRG00000000092	-	100	46.364	Neolamprologus_brichardi
ENSRNOG00000028403	Ptcd2	97	46.216	ENSNBRG00000008174	ptcd2	96	46.216	Neolamprologus_brichardi
ENSRNOG00000028403	Ptcd2	100	72.324	ENSNLEG00000004516	PTCD2	99	72.324	Nomascus_leucogenys
ENSRNOG00000028403	Ptcd2	82	49.682	ENSMEUG00000014012	-	82	49.682	Notamacropus_eugenii
ENSRNOG00000028403	Ptcd2	100	71.018	ENSOPRG00000007290	PTCD2	99	71.018	Ochotona_princeps
ENSRNOG00000028403	Ptcd2	100	73.766	ENSODEG00000016417	PTCD2	100	73.766	Octodon_degus
ENSRNOG00000028403	Ptcd2	81	47.588	ENSONIG00000011269	ptcd2	90	47.588	Oreochromis_niloticus
ENSRNOG00000028403	Ptcd2	96	75.342	ENSOCUG00000007970	PTCD2	100	73.890	Oryctolagus_cuniculus
ENSRNOG00000028403	Ptcd2	97	45.652	ENSORLG00000003851	ptcd2	94	45.652	Oryzias_latipes
ENSRNOG00000028403	Ptcd2	97	44.837	ENSORLG00020009823	ptcd2	95	44.837	Oryzias_latipes_hni
ENSRNOG00000028403	Ptcd2	92	46.286	ENSORLG00015016777	ptcd2	99	46.286	Oryzias_latipes_hsok
ENSRNOG00000028403	Ptcd2	97	43.750	ENSOMEG00000012396	ptcd2	89	43.750	Oryzias_melastigma
ENSRNOG00000028403	Ptcd2	100	73.107	ENSOGAG00000008390	PTCD2	99	73.107	Otolemur_garnettii
ENSRNOG00000028403	Ptcd2	100	74.740	ENSOARG00000005087	PTCD2	99	74.740	Ovis_aries
ENSRNOG00000028403	Ptcd2	100	73.629	ENSPPAG00000028480	PTCD2	99	73.629	Pan_paniscus
ENSRNOG00000028403	Ptcd2	100	73.890	ENSPTRG00000016968	PTCD2	99	73.890	Pan_troglodytes
ENSRNOG00000028403	Ptcd2	91	75.652	ENSPANG00000006611	PTCD2	89	75.652	Papio_anubis
ENSRNOG00000028403	Ptcd2	93	49.162	ENSPKIG00000019896	ptcd2	93	49.162	Paramormyrops_kingsleyae
ENSRNOG00000028403	Ptcd2	83	58.228	ENSPSIG00000014559	PTCD2	98	58.228	Pelodiscus_sinensis
ENSRNOG00000028403	Ptcd2	100	81.723	ENSPEMG00000000884	Ptcd2	100	81.723	Peromyscus_maniculatus_bairdii
ENSRNOG00000028403	Ptcd2	94	58.659	ENSPCIG00000029047	PTCD2	93	58.659	Phascolarctos_cinereus
ENSRNOG00000028403	Ptcd2	91	47.126	ENSPLAG00000010456	ptcd2	91	47.126	Poecilia_latipinna
ENSRNOG00000028403	Ptcd2	91	47.414	ENSPREG00000021797	ptcd2	88	47.414	Poecilia_reticulata
ENSRNOG00000028403	Ptcd2	100	63.185	ENSPPYG00000015543	PTCD2	99	63.185	Pongo_abelii
ENSRNOG00000028403	Ptcd2	78	64.333	ENSPCAG00000006806	PTCD2	96	64.333	Procavia_capensis
ENSRNOG00000028403	Ptcd2	100	70.757	ENSPVAG00000010935	PTCD2	99	70.757	Pteropus_vampyrus
ENSRNOG00000028403	Ptcd2	97	45.946	ENSPNYG00000003122	ptcd2	94	45.946	Pundamilia_nyererei
ENSRNOG00000028403	Ptcd2	96	47.154	ENSPNAG00000021490	ptcd2	95	47.154	Pygocentrus_nattereri
ENSRNOG00000028403	Ptcd2	100	68.668	ENSRBIG00000032929	PTCD2	99	68.668	Rhinopithecus_bieti
ENSRNOG00000028403	Ptcd2	100	72.063	ENSRROG00000000080	PTCD2	100	72.063	Rhinopithecus_roxellana
ENSRNOG00000028403	Ptcd2	100	71.503	ENSSBOG00000018911	PTCD2	100	71.503	Saimiri_boliviensis_boliviensis
ENSRNOG00000028403	Ptcd2	97	57.258	ENSSHAG00000003833	PTCD2	96	57.258	Sarcophilus_harrisii
ENSRNOG00000028403	Ptcd2	92	47.009	ENSSFOG00015015415	ptcd2	91	47.009	Scleropages_formosus
ENSRNOG00000028403	Ptcd2	92	45.143	ENSSMAG00000010350	ptcd2	91	45.143	Scophthalmus_maximus
ENSRNOG00000028403	Ptcd2	96	48.352	ENSSDUG00000008142	ptcd2	89	48.352	Seriola_dumerili
ENSRNOG00000028403	Ptcd2	96	48.077	ENSSLDG00000015284	ptcd2	93	48.077	Seriola_lalandi_dorsalis
ENSRNOG00000028403	Ptcd2	81	64.423	ENSSARG00000004983	PTCD2	99	64.423	Sorex_araneus
ENSRNOG00000028403	Ptcd2	93	52.528	ENSSPUG00000000176	PTCD2	90	52.528	Sphenodon_punctatus
ENSRNOG00000028403	Ptcd2	96	46.866	ENSSPAG00000008591	ptcd2	94	46.866	Stegastes_partitus
ENSRNOG00000028403	Ptcd2	100	73.228	ENSSSCG00000016975	PTCD2	90	73.228	Sus_scrofa
ENSRNOG00000028403	Ptcd2	91	50.435	ENSTGUG00000005705	PTCD2	99	50.435	Taeniopygia_guttata
ENSRNOG00000028403	Ptcd2	100	71.018	ENSTBEG00000016559	PTCD2	99	71.018	Tupaia_belangeri
ENSRNOG00000028403	Ptcd2	100	72.727	ENSTTRG00000011851	PTCD2	99	72.727	Tursiops_truncatus
ENSRNOG00000028403	Ptcd2	100	73.107	ENSUAMG00000007583	PTCD2	90	73.107	Ursus_americanus
ENSRNOG00000028403	Ptcd2	100	72.846	ENSUMAG00000007666	PTCD2	100	72.846	Ursus_maritimus
ENSRNOG00000028403	Ptcd2	100	72.135	ENSVPAG00000009597	PTCD2	99	72.135	Vicugna_pacos
ENSRNOG00000028403	Ptcd2	100	73.629	ENSVVUG00000007299	-	100	73.629	Vulpes_vulpes
ENSRNOG00000028403	Ptcd2	94	55.556	ENSXETG00000031652	PTCD2	94	55.556	Xenopus_tropicalis
ENSRNOG00000028403	Ptcd2	91	47.126	ENSXMAG00000005940	ptcd2	82	47.126	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001822	kidney development	-	IEA	Process
GO:0001822	kidney development	-	ISO	Process
GO:0001889	liver development	-	IEA	Process
GO:0001889	liver development	-	ISO	Process
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0007005	mitochondrion organization	-	IEA	Process
GO:0007005	mitochondrion organization	-	ISO	Process
GO:0007507	heart development	-	ISO	Process
GO:0010468	regulation of gene expression	-	ISO	Process
GO:0048747	muscle fiber development	-	IEA	Process
GO:0048747	muscle fiber development	-	ISO	Process
GO:0050684	regulation of mRNA processing	-	IEA	Process
GO:0050684	regulation of mRNA processing	-	ISO	Process
GO:0055010	ventricular cardiac muscle tissue morphogenesis	-	IEA	Process
GO:0055010	ventricular cardiac muscle tissue morphogenesis	-	ISO	Process