EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000028834 (Gene tree)
Gene ID
363633
Gene Symbol
Polr2a
Alias
Polr2a_mapped|Rpo2-1
Full Name
RNA polymerase II subunit A
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
25801 bases
Position
chr10:56339284-56365084
Accession
1587326
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000061492RNA_pol_Rpb1_5PF04998.177.5e-10111
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27140
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27240
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27340
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27440
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27540
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27640
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27740
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27840
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-27940
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271040
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271140
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271240
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271340
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271440
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271540
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271640
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271740
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271840
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-271940
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272040
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272140
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272240
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272340
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272440
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272540
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272640
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272740
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272840
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-272940
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273040
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273140
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273240
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273340
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273440
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273540
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273640
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273740
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273840
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-273940
ENSRNOP00000061492RNA_pol_Rpb1_RPF05001.133.8e-274040
ENSRNOP00000061492RNA_pol_Rpb1_4PF05000.174.3e-3811
ENSRNOP00000061492RNA_pol_Rpb1_2PF00623.201.4e-7411
ENSRNOP00000061492RNA_pol_Rpb1_3PF04983.186.1e-5011
ENSRNOP00000061492RNA_pol_Rpb1_1PF04997.125.9e-10911
ENSRNOP00000061492RNA_pol_Rpb1_7PF04990.122.5e-5411
ENSRNOP00000061492RNA_pol_Rpb1_6PF04992.141.7e-6711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000068013-6512XM_001079162ENSRNOP000000614921970 (aa)XP_001079162D4A5A6
Gene Model
Click here to download ENSRNOG00000028834's gene model file
Pathways
Pathway IDPathway NameSource
rno03020RNA polymeraseKEGG
rno05016Huntington diseaseKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000028834's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000028834Polr2a6637.969ENSRNOG00000010008Polr3a9137.829
ENSRNOG00000028834Polr2a5833.333ENSRNOG00000009545Polr1a6933.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000028834Polr2a8294.420ENSAPOG00000006552polr2a9194.413Acanthochromis_polyacanthus
ENSRNOG00000028834Polr2a10099.696ENSAMEG00000016265-10099.696Ailuropoda_melanoleuca
ENSRNOG00000028834Polr2a8292.436ENSACIG00000015982polr2a8192.427Amphilophus_citrinellus
ENSRNOG00000028834Polr2a9792.374ENSAOCG00000004255polr2a9492.365Amphiprion_ocellaris
ENSRNOG00000028834Polr2a8294.482ENSAPEG00000012623polr2a8294.475Amphiprion_percula
ENSRNOG00000028834Polr2a8294.358ENSATEG00000019644polr2a8294.351Anabas_testudineus
ENSRNOG00000028834Polr2a10098.426ENSACAG00000014561POLR2A10098.426Anolis_carolinensis
ENSRNOG00000028834Polr2a10099.898ENSANAG00000020093-10099.898Aotus_nancymaae
ENSRNOG00000028834Polr2a8294.172ENSACLG00000006735polr2a8294.165Astatotilapia_calliptera
ENSRNOG00000028834Polr2a8294.730ENSAMXG00000020046polr2a8294.724Astyanax_mexicanus
ENSRNOG00000028834Polr2a10099.848ENSBTAG00000046765POLR2A10099.848Bos_taurus
ENSRNOG00000028834Polr2a9469.963WBGene00000123ama-19972.727Caenorhabditis_elegans
ENSRNOG00000028834Polr2a10099.543ENSCAFG00000016532POLR2A10099.776Canis_familiaris
ENSRNOG00000028834Polr2a10099.036ENSCAFG00020007929-10099.036Canis_lupus_dingo
ENSRNOG00000028834Polr2a10099.848ENSCHIG00000027173-10099.848Capra_hircus
ENSRNOG00000028834Polr2a10097.411ENSTSYG00000012803-10097.919Carlito_syrichta
ENSRNOG00000028834Polr2a9895.664ENSCAPG00000001882-9898.607Cavia_aperea
ENSRNOG00000028834Polr2a10095.738ENSCPOG00000014812-9898.634Cavia_porcellus
ENSRNOG00000028834Polr2a10099.898ENSCCAG00000020938-10099.898Cebus_capucinus
ENSRNOG00000028834Polr2a10099.848ENSCATG00000013680-10099.848Cercocebus_atys
ENSRNOG00000028834Polr2a10099.746ENSCLAG00000012196-10099.746Chinchilla_lanigera
ENSRNOG00000028834Polr2a8290.685ENSCSAG00000011644-8290.685Chlorocebus_sabaeus
ENSRNOG00000028834Polr2a10093.909ENSCPBG00000012697POLR2A10093.909Chrysemys_picta_bellii
ENSRNOG00000028834Polr2a9976.488ENSCING00000007884-9976.751Ciona_intestinalis
ENSRNOG00000028834Polr2a9583.333ENSCSAVG00000008334-9983.871Ciona_savignyi
ENSRNOG00000028834Polr2a10099.188ENSCANG00000010622-10099.188Colobus_angolensis_palliatus
ENSRNOG00000028834Polr2a10094.260ENSCGRG00001003538Polr2a10094.562Cricetulus_griseus_chok1gshd
ENSRNOG00000028834Polr2a9695.440ENSCGRG00000012105Polr2a9596.012Cricetulus_griseus_crigri
ENSRNOG00000028834Polr2a8293.738ENSCSEG00000002635polr2a8293.731Cynoglossus_semilaevis
ENSRNOG00000028834Polr2a8294.606ENSCVAG00000005156polr2a8294.600Cyprinodon_variegatus
ENSRNOG00000028834Polr2a8294.424ENSDARG00000099966polr2a8294.417Danio_rerio
ENSRNOG00000028834Polr2a10096.904ENSDNOG00000016482-10096.904Dasypus_novemcinctus
ENSRNOG00000028834Polr2a10099.898ENSDORG00000008667Polr2a10099.898Dipodomys_ordii
ENSRNOG00000028834Polr2a9969.942FBgn0003277RpII2159974.766Drosophila_melanogaster
ENSRNOG00000028834Polr2a9488.028ENSETEG00000002540-9488.028Echinops_telfairi
ENSRNOG00000028834Polr2a8188.085ENSEBUG00000013967polr2a8287.492Eptatretus_burgeri
ENSRNOG00000028834Polr2a10096.853ENSEASG00005019114-10096.954Equus_asinus_asinus
ENSRNOG00000028834Polr2a10099.848ENSECAG00000018485POLR2A10099.848Equus_caballus
ENSRNOG00000028834Polr2a8799.733ENSEEUG00000001154-9599.733Erinaceus_europaeus
ENSRNOG00000028834Polr2a8990.080ENSELUG00000014284polr2a8490.746Esox_lucius
ENSRNOG00000028834Polr2a10099.848ENSFDAG00000008287-10099.848Fukomys_damarensis
ENSRNOG00000028834Polr2a8594.606ENSFHEG00000001768polr2a9894.600Fundulus_heteroclitus
ENSRNOG00000028834Polr2a9990.301ENSGMOG00000007725polr2a100100.000Gadus_morhua
ENSRNOG00000028834Polr2a9992.958ENSGAFG00000005389polr2a9992.365Gambusia_affinis
ENSRNOG00000028834Polr2a9990.689ENSGACG00000019366polr2a10088.190Gasterosteus_aculeatus
ENSRNOG00000028834Polr2a10098.075ENSGGOG00000014800-10098.075Gorilla_gorilla
ENSRNOG00000028834Polr2a8594.172ENSHBUG00000018937polr2a9994.165Haplochromis_burtoni
ENSRNOG00000028834Polr2a10099.848ENSHGLG00000012381POLR2A10099.848Heterocephalus_glaber_female
ENSRNOG00000028834Polr2a10099.848ENSHGLG00100014843POLR2A10099.848Heterocephalus_glaber_male
ENSRNOG00000028834Polr2a8293.986ENSHCOG00000011874polr2a8293.979Hippocampus_comes
ENSRNOG00000028834Polr2a8294.110ENSIPUG00000002613Polr2a8294.103Ictalurus_punctatus
ENSRNOG00000028834Polr2a10099.898ENSSTOG00000001304-10099.898Ictidomys_tridecemlineatus
ENSRNOG00000028834Polr2a10099.797ENSJJAG00000013049Polr2a10099.797Jaculus_jaculus
ENSRNOG00000028834Polr2a8085.292ENSKMAG00000016343polr2a8585.544Kryptolebias_marmoratus
ENSRNOG00000028834Polr2a8294.110ENSLBEG00000027652polr2a8294.103Labrus_bergylta
ENSRNOG00000028834Polr2a8087.160ENSLACG00000012071POLR2A8187.215Latimeria_chalumnae
ENSRNOG00000028834Polr2a9194.902ENSLOCG00000013863polr2a9994.596Lepisosteus_oculatus
ENSRNOG00000028834Polr2a10099.848ENSLAFG00000008626-10099.848Loxodonta_africana
ENSRNOG00000028834Polr2a5098.264ENSMFAG00000007042-9998.264Macaca_fascicularis
ENSRNOG00000028834Polr2a10099.848ENSMMUG00000023620-10099.848Macaca_mulatta
ENSRNOG00000028834Polr2a10099.140ENSMNEG00000040407-10099.140Macaca_nemestrina
ENSRNOG00000028834Polr2a9994.921ENSMLEG00000030263-9998.264Mandrillus_leucophaeus
ENSRNOG00000028834Polr2a8294.234ENSMAMG00000003351polr2a8294.227Mastacembelus_armatus
ENSRNOG00000028834Polr2a8294.172ENSMZEG00005021429polr2a8294.165Maylandia_zebra
ENSRNOG00000028834Polr2a5099.898ENSMAUG00000021055-9999.898Mesocricetus_auratus
ENSRNOG00000028834Polr2a10099.797ENSMICG00000013372-10099.797Microcebus_murinus
ENSRNOG00000028834Polr2a10093.122ENSMOCG00000018279Polr2a10093.327Microtus_ochrogaster
ENSRNOG00000028834Polr2a9393.738ENSMMOG00000012515polr2a9593.731Mola_mola
ENSRNOG00000028834Polr2a10099.492ENSMODG00000007009-10099.492Monodelphis_domestica
ENSRNOG00000028834Polr2a9491.646ENSMALG00000008716polr2a9992.303Monopterus_albus
ENSRNOG00000028834Polr2a10099.848MGP_CAROLIEiJ_G0016587Polr2a10099.848Mus_caroli
ENSRNOG00000028834Polr2a10099.848ENSMUSG00000005198Polr2a10099.848Mus_musculus
ENSRNOG00000028834Polr2a10098.078MGP_PahariEiJ_G0017718Polr2a10098.078Mus_pahari
ENSRNOG00000028834Polr2a10099.848MGP_SPRETEiJ_G0017423Polr2a10099.848Mus_spretus
ENSRNOG00000028834Polr2a10099.898ENSMPUG00000009648-10099.898Mustela_putorius_furo
ENSRNOG00000028834Polr2a10099.391ENSMLUG00000009088-10099.391Myotis_lucifugus
ENSRNOG00000028834Polr2a10099.898ENSNGAG00000002543Polr2a10099.898Nannospalax_galili
ENSRNOG00000028834Polr2a8292.126ENSNBRG00000002005polr2a8192.117Neolamprologus_brichardi
ENSRNOG00000028834Polr2a10098.683ENSNLEG00000009460-10098.683Nomascus_leucogenys
ENSRNOG00000028834Polr2a9499.455ENSMEUG00000008611-9399.455Notamacropus_eugenii
ENSRNOG00000028834Polr2a8099.810ENSOPRG00000015116-9999.810Ochotona_princeps
ENSRNOG00000028834Polr2a10092.195ENSODEG00000017674-10095.076Octodon_degus
ENSRNOG00000028834Polr2a8294.358ENSONIG00000009231polr2a8294.351Oreochromis_niloticus
ENSRNOG00000028834Polr2a10097.311ENSOCUG00000017929-10097.710Oryctolagus_cuniculus
ENSRNOG00000028834Polr2a8294.234ENSORLG00000006431polr2a8294.227Oryzias_latipes
ENSRNOG00000028834Polr2a8294.234ENSORLG00020010235polr2a8294.227Oryzias_latipes_hni
ENSRNOG00000028834Polr2a8294.234ENSORLG00015007075polr2a8294.227Oryzias_latipes_hsok
ENSRNOG00000028834Polr2a9294.344ENSOMEG00000010713polr2a10094.344Oryzias_melastigma
ENSRNOG00000028834Polr2a10099.746ENSOGAG00000033608-10099.746Otolemur_garnettii
ENSRNOG00000028834Polr2a9899.735ENSOARG00000013874-10099.735Ovis_aries
ENSRNOG00000028834Polr2a10096.802ENSPPAG00000043734-10097.310Pan_paniscus
ENSRNOG00000028834Polr2a10098.683ENSPTRG00000008691POLR2A10098.683Pan_troglodytes
ENSRNOG00000028834Polr2a10099.188ENSPANG00000024099-10099.188Papio_anubis
ENSRNOG00000028834Polr2a7792.793ENSPKIG00000005727polr2a8582.000Paramormyrops_kingsleyae
ENSRNOG00000028834Polr2a9896.478ENSPSIG00000014006POLR2A10096.478Pelodiscus_sinensis
ENSRNOG00000028834Polr2a10094.164ENSPMGG00000019734polr2a9994.600Periophthalmus_magnuspinnatus
ENSRNOG00000028834Polr2a10099.898ENSPEMG00000012521Polr2a10099.898Peromyscus_maniculatus_bairdii
ENSRNOG00000028834Polr2a9687.310ENSPCIG00000028851-9687.310Phascolarctos_cinereus
ENSRNOG00000028834Polr2a8594.544ENSPFOG00000007890polr2a9994.538Poecilia_formosa
ENSRNOG00000028834Polr2a8594.544ENSPLAG00000007399polr2a9994.538Poecilia_latipinna
ENSRNOG00000028834Polr2a8594.544ENSPMEG00000002071polr2a9994.538Poecilia_mexicana
ENSRNOG00000028834Polr2a8294.482ENSPREG00000013122polr2a8294.475Poecilia_reticulata
ENSRNOG00000028834Polr2a10096.704ENSPPYG00000007924-10098.834Pongo_abelii
ENSRNOG00000028834Polr2a9299.737ENSPCAG00000006951-9299.737Procavia_capensis
ENSRNOG00000028834Polr2a10098.690ENSPCOG00000025260-10098.690Propithecus_coquereli
ENSRNOG00000028834Polr2a10099.645ENSPVAG00000005069-10099.645Pteropus_vampyrus
ENSRNOG00000028834Polr2a8394.429ENSPNYG00000022340polr2a8294.227Pundamilia_nyererei
ENSRNOG00000028834Polr2a8294.544ENSPNAG00000011237polr2a8294.538Pygocentrus_nattereri
ENSRNOG00000028834Polr2a8299.503ENSRBIG00000002471-10096.447Rhinopithecus_bieti
ENSRNOG00000028834Polr2a10099.492ENSRROG00000029583-10099.492Rhinopithecus_roxellana
ENSRNOG00000028834Polr2a8388.000YDL140CRPO219980.180Saccharomyces_cerevisiae
ENSRNOG00000028834Polr2a10099.898ENSSBOG00000000808-10099.898Saimiri_boliviensis_boliviensis
ENSRNOG00000028834Polr2a9299.441ENSSHAG00000002858-8499.441Sarcophilus_harrisii
ENSRNOG00000028834Polr2a8294.606ENSSFOG00015023275polr2a8294.600Scleropages_formosus
ENSRNOG00000028834Polr2a8293.986ENSSMAG00000009137polr2a8293.979Scophthalmus_maximus
ENSRNOG00000028834Polr2a8294.358ENSSDUG00000020466polr2a8294.351Seriola_dumerili
ENSRNOG00000028834Polr2a8294.358ENSSLDG00000020613polr2a8294.351Seriola_lalandi_dorsalis
ENSRNOG00000028834Polr2a9794.976ENSSARG00000005875-9994.976Sorex_araneus
ENSRNOG00000028834Polr2a10094.420ENSSPAG00000016741polr2a9494.413Stegastes_partitus
ENSRNOG00000028834Polr2a10099.137ENSSSCG00000028278-10099.137Sus_scrofa
ENSRNOG00000028834Polr2a9988.538ENSTRUG00000012320polr2a8188.524Takifugu_rubripes
ENSRNOG00000028834Polr2a9992.870ENSTNIG00000010136polr2a10092.862Tetraodon_nigroviridis
ENSRNOG00000028834Polr2a74100.000ENSTBEG00000013294-58100.000Tupaia_belangeri
ENSRNOG00000028834Polr2a10098.325ENSTTRG00000014273-10098.325Tursiops_truncatus
ENSRNOG00000028834Polr2a9695.256ENSUAMG00000014866-10099.628Ursus_americanus
ENSRNOG00000028834Polr2a9997.386ENSUMAG00000015732-10097.386Ursus_maritimus
ENSRNOG00000028834Polr2a66100.000ENSVPAG00000008842-76100.000Vicugna_pacos
ENSRNOG00000028834Polr2a10096.604ENSVVUG00000027878-10098.528Vulpes_vulpes
ENSRNOG00000028834Polr2a9996.920ENSXETG00000012465polr2a10096.920Xenopus_tropicalis
ENSRNOG00000028834Polr2a8992.312ENSXCOG00000001804polr2a9492.303Xiphophorus_couchianus
ENSRNOG00000028834Polr2a8294.482ENSXMAG00000015687polr2a8294.475Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000974Prp19 complex-ISOComponent
GO:0001047core promoter binding-IEAFunction
GO:0001047core promoter binding-ISOFunction
GO:0001055RNA polymerase II activity21873635.IBAFunction
GO:0003674molecular_function-NDFunction
GO:0003677DNA binding-ISOFunction
GO:0003899DNA-directed 5'-3' RNA polymerase activity21873635.IBAFunction
GO:0005634nucleus19095046.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005665RNA polymerase II, core complex21873635.IBAComponent
GO:0005665RNA polymerase II, core complex-ISOComponent
GO:0005719nuclear euchromatin-IEAComponent
GO:0005719nuclear euchromatin-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0006353DNA-templated transcription, termination-ISOProcess
GO:0006366transcription by RNA polymerase II-IEAProcess
GO:0006366transcription by RNA polymerase II-ISOProcess
GO:0008022protein C-terminus binding-ISOFunction
GO:0014070response to organic cyclic compound23026235.IEPProcess
GO:0031625ubiquitin protein ligase binding-ISOFunction
GO:0033120positive regulation of RNA splicing-ISOProcess
GO:0071453cellular response to oxygen levels19095046.IEPProcess
GO:1990841promoter-specific chromatin binding-ISOFunction

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