EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000029558 (Gene tree)
Gene ID: 307920
Gene Symbol: Pabpn1l
Alias: Epabp2|LOC307920|Pabpnl1|RGD1562761
Full Name: poly(A)binding protein nuclear 1-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 3443 bases
Position: chr19:55430810-55434252
Accession: 1562761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000050572	RRM_1	PF00076.22	3.2e-16	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000045052	-	1129	-	ENSRNOP00000050572	269 (aa)	-	B0BNE4

Gene Model

Click here to download ENSRNOG00000029558's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG
rno05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000029558's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000029558	Pabpn1l	52	59.184	ENSRNOG00000042195	Pabpn1	73	45.339

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000029558	Pabpn1l	100	68.817	ENSG00000205022	PABPN1L	100	69.176	Homo_sapiens
ENSRNOG00000029558	Pabpn1l	54	58.621	ENSACIG00000021400	PABPN1L	77	58.621	Amphilophus_citrinellus
ENSRNOG00000029558	Pabpn1l	56	57.616	ENSATEG00000011646	PABPN1L	70	50.538	Anabas_testudineus
ENSRNOG00000029558	Pabpn1l	72	57.653	ENSACAG00000013250	PABPN1L	100	56.633	Anolis_carolinensis
ENSRNOG00000029558	Pabpn1l	100	66.426	ENSANAG00000038178	PABPN1L	100	67.148	Aotus_nancymaae
ENSRNOG00000029558	Pabpn1l	54	58.621	ENSACLG00000025147	PABPN1L	72	47.236	Astatotilapia_calliptera
ENSRNOG00000029558	Pabpn1l	59	51.899	ENSAMXG00000010873	PABPN1L	61	52.761	Astyanax_mexicanus
ENSRNOG00000029558	Pabpn1l	52	76.596	ENSBTAG00000006727	-	86	76.596	Bos_taurus
ENSRNOG00000029558	Pabpn1l	100	63.082	ENSBTAG00000023752	-	100	63.441	Bos_taurus
ENSRNOG00000029558	Pabpn1l	100	65.455	ENSCJAG00000045284	PABPN1L	100	68.116	Callithrix_jacchus
ENSRNOG00000029558	Pabpn1l	100	60.764	ENSCHIG00000013987	PABPN1L	100	59.722	Capra_hircus
ENSRNOG00000029558	Pabpn1l	95	67.041	ENSCAPG00000007240	PABPN1L	100	67.416	Cavia_aperea
ENSRNOG00000029558	Pabpn1l	100	69.231	ENSCPOG00000025951	PABPN1L	100	69.597	Cavia_porcellus
ENSRNOG00000029558	Pabpn1l	100	65.580	ENSCCAG00000027631	PABPN1L	100	68.231	Cebus_capucinus
ENSRNOG00000029558	Pabpn1l	100	68.000	ENSCATG00000031060	PABPN1L	100	69.928	Cercocebus_atys
ENSRNOG00000029558	Pabpn1l	100	71.324	ENSCLAG00000000704	PABPN1L	100	71.324	Chinchilla_lanigera
ENSRNOG00000029558	Pabpn1l	100	66.781	ENSCSAG00000002881	PABPN1L	100	67.808	Chlorocebus_sabaeus
ENSRNOG00000029558	Pabpn1l	72	55.330	ENSCPBG00000023441	PABPN1L	61	57.868	Chrysemys_picta_bellii
ENSRNOG00000029558	Pabpn1l	100	66.667	ENSCANG00000039336	PABPN1L	100	69.314	Colobus_angolensis_palliatus
ENSRNOG00000029558	Pabpn1l	100	80.364	ENSCGRG00001013211	Pabpn1l	100	82.182	Cricetulus_griseus_chok1gshd
ENSRNOG00000029558	Pabpn1l	100	80.364	ENSCGRG00000015868	Pabpn1l	100	82.182	Cricetulus_griseus_crigri
ENSRNOG00000029558	Pabpn1l	100	53.763	ENSDNOG00000034677	PABPN1L	100	58.423	Dasypus_novemcinctus
ENSRNOG00000029558	Pabpn1l	100	67.518	ENSEASG00005000777	PABPN1L	100	66.788	Equus_asinus_asinus
ENSRNOG00000029558	Pabpn1l	100	68.248	ENSECAG00000000378	PABPN1L	100	67.518	Equus_caballus
ENSRNOG00000029558	Pabpn1l	100	59.259	ENSEEUG00000004747	PABPN1L	100	59.259	Erinaceus_europaeus
ENSRNOG00000029558	Pabpn1l	55	55.405	ENSELUG00000018385	PABPN1L	75	47.393	Esox_lucius
ENSRNOG00000029558	Pabpn1l	100	65.591	ENSFCAG00000010465	PABPN1L	100	64.875	Felis_catus
ENSRNOG00000029558	Pabpn1l	73	54.545	ENSFALG00000003319	PABPN1L	79	54.545	Ficedula_albicollis
ENSRNOG00000029558	Pabpn1l	100	70.956	ENSFDAG00000021067	PABPN1L	100	70.956	Fukomys_damarensis
ENSRNOG00000029558	Pabpn1l	60	49.383	ENSFHEG00000018295	PABPN1L	72	46.734	Fundulus_heteroclitus
ENSRNOG00000029558	Pabpn1l	59	61.350	ENSGALG00000006242	PABPN1L	85	64.000	Gallus_gallus
ENSRNOG00000029558	Pabpn1l	69	55.376	ENSGAGG00000010613	PABPN1L	59	55.376	Gopherus_agassizii
ENSRNOG00000029558	Pabpn1l	100	68.000	ENSGGOG00000012670	PABPN1L	100	69.928	Gorilla_gorilla
ENSRNOG00000029558	Pabpn1l	54	58.621	ENSHBUG00000002388	PABPN1L	72	47.739	Haplochromis_burtoni
ENSRNOG00000029558	Pabpn1l	96	69.884	ENSHGLG00000014207	PABPN1L	100	69.884	Heterocephalus_glaber_female
ENSRNOG00000029558	Pabpn1l	96	69.884	ENSHGLG00100005230	PABPN1L	100	69.884	Heterocephalus_glaber_male
ENSRNOG00000029558	Pabpn1l	100	67.384	ENSSTOG00000020814	PABPN1L	100	67.025	Ictidomys_tridecemlineatus
ENSRNOG00000029558	Pabpn1l	100	72.364	ENSJJAG00000006433	Pabpn1l	100	72.364	Jaculus_jaculus
ENSRNOG00000029558	Pabpn1l	72	66.837	ENSLAFG00000025902	-	78	66.837	Loxodonta_africana
ENSRNOG00000029558	Pabpn1l	100	67.636	ENSMFAG00000002924	PABPN1L	100	69.565	Macaca_fascicularis
ENSRNOG00000029558	Pabpn1l	100	67.273	ENSMMUG00000012438	PABPN1L	100	69.203	Macaca_mulatta
ENSRNOG00000029558	Pabpn1l	100	67.636	ENSMNEG00000044808	PABPN1L	100	69.565	Macaca_nemestrina
ENSRNOG00000029558	Pabpn1l	100	68.364	ENSMLEG00000032667	PABPN1L	100	70.290	Mandrillus_leucophaeus
ENSRNOG00000029558	Pabpn1l	54	58.621	ENSMZEG00005002186	PABPN1L	72	47.236	Maylandia_zebra
ENSRNOG00000029558	Pabpn1l	100	81.919	ENSMAUG00000014032	Pabpn1l	100	81.919	Mesocricetus_auratus
ENSRNOG00000029558	Pabpn1l	100	69.818	ENSMICG00000028179	PABPN1L	100	69.818	Microcebus_murinus
ENSRNOG00000029558	Pabpn1l	100	80.000	ENSMOCG00000007955	Pabpn1l	100	80.000	Microtus_ochrogaster
ENSRNOG00000029558	Pabpn1l	100	54.015	ENSMODG00000003873	-	100	54.380	Monodelphis_domestica
ENSRNOG00000029558	Pabpn1l	100	86.081	MGP_CAROLIEiJ_G0031670	Pabpn1l	100	86.081	Mus_caroli
ENSRNOG00000029558	Pabpn1l	100	85.714	ENSMUSG00000069867	Pabpn1l	100	85.714	Mus_musculus
ENSRNOG00000029558	Pabpn1l	100	85.714	MGP_PahariEiJ_G0023268	Pabpn1l	100	85.714	Mus_pahari
ENSRNOG00000029558	Pabpn1l	100	85.348	MGP_SPRETEiJ_G0032788	Pabpn1l	100	85.348	Mus_spretus
ENSRNOG00000029558	Pabpn1l	97	49.818	ENSMLUG00000003228	PABPN1L	95	49.451	Myotis_lucifugus
ENSRNOG00000029558	Pabpn1l	100	79.779	ENSNGAG00000023992	Pabpn1l	100	79.779	Nannospalax_galili
ENSRNOG00000029558	Pabpn1l	54	58.621	ENSNBRG00000017078	PABPN1L	58	58.621	Neolamprologus_brichardi
ENSRNOG00000029558	Pabpn1l	100	70.696	ENSOPRG00000005597	PABPN1L	100	70.696	Ochotona_princeps
ENSRNOG00000029558	Pabpn1l	100	64.336	ENSODEG00000004649	PABPN1L	100	62.238	Octodon_degus
ENSRNOG00000029558	Pabpn1l	100	53.237	ENSOANG00000013901	PABPN1L	100	56.089	Ornithorhynchus_anatinus
ENSRNOG00000029558	Pabpn1l	70	51.323	ENSORLG00000026560	PABPN1L	68	50.265	Oryzias_latipes
ENSRNOG00000029558	Pabpn1l	70	51.323	ENSORLG00020015068	PABPN1L	68	50.265	Oryzias_latipes_hni
ENSRNOG00000029558	Pabpn1l	70	51.323	ENSORLG00015000397	PABPN1L	68	50.265	Oryzias_latipes_hsok
ENSRNOG00000029558	Pabpn1l	78	48.113	ENSOMEG00000017896	PABPN1L	54	48.113	Oryzias_melastigma
ENSRNOG00000029558	Pabpn1l	100	68.727	ENSOGAG00000000433	PABPN1L	100	68.727	Otolemur_garnettii
ENSRNOG00000029558	Pabpn1l	100	61.716	ENSOARG00000013682	PABPN1L	100	62.376	Ovis_aries
ENSRNOG00000029558	Pabpn1l	100	69.534	ENSPPAG00000028866	PABPN1L	100	69.892	Pan_paniscus
ENSRNOG00000029558	Pabpn1l	100	66.308	ENSPPRG00000015106	PABPN1L	100	65.233	Panthera_pardus
ENSRNOG00000029558	Pabpn1l	93	61.089	ENSPTIG00000015606	PABPN1L	100	60.311	Panthera_tigris_altaica
ENSRNOG00000029558	Pabpn1l	100	69.534	ENSPTRG00000031120	PABPN1L	100	69.892	Pan_troglodytes
ENSRNOG00000029558	Pabpn1l	100	67.636	ENSPANG00000026039	PABPN1L	100	69.565	Papio_anubis
ENSRNOG00000029558	Pabpn1l	71	51.759	ENSPSIG00000003404	PABPN1L	74	67.376	Pelodiscus_sinensis
ENSRNOG00000029558	Pabpn1l	100	81.852	ENSPEMG00000016624	Pabpn1l	100	81.852	Peromyscus_maniculatus_bairdii
ENSRNOG00000029558	Pabpn1l	53	62.585	ENSPCIG00000007038	-	100	62.585	Phascolarctos_cinereus
ENSRNOG00000029558	Pabpn1l	100	67.986	ENSPPYG00000007655	PABPN1L	100	70.251	Pongo_abelii
ENSRNOG00000029558	Pabpn1l	100	67.273	ENSPCOG00000024077	PABPN1L	100	68.000	Propithecus_coquereli
ENSRNOG00000029558	Pabpn1l	100	65.957	ENSPVAG00000002716	PABPN1L	100	66.312	Pteropus_vampyrus
ENSRNOG00000029558	Pabpn1l	54	58.621	ENSPNYG00000004803	PABPN1L	72	47.236	Pundamilia_nyererei
ENSRNOG00000029558	Pabpn1l	100	68.727	ENSRBIG00000030740	PABPN1L	100	70.652	Rhinopithecus_bieti
ENSRNOG00000029558	Pabpn1l	100	68.000	ENSRROG00000032240	-	100	69.928	Rhinopithecus_roxellana
ENSRNOG00000029558	Pabpn1l	99	67.518	ENSRROG00000035483	-	99	69.455	Rhinopithecus_roxellana
ENSRNOG00000029558	Pabpn1l	100	66.304	ENSSBOG00000018410	PABPN1L	100	68.592	Saimiri_boliviensis_boliviensis
ENSRNOG00000029558	Pabpn1l	100	51.195	ENSSHAG00000010001	-	100	52.234	Sarcophilus_harrisii
ENSRNOG00000029558	Pabpn1l	56	54.967	ENSSMAG00000021348	PABPN1L	72	47.761	Scophthalmus_maximus
ENSRNOG00000029558	Pabpn1l	91	53.252	ENSSARG00000005178	-	99	51.220	Sorex_araneus
ENSRNOG00000029558	Pabpn1l	71	58.031	ENSSPUG00000007031	PABPN1L	84	58.247	Sphenodon_punctatus
ENSRNOG00000029558	Pabpn1l	52	60.000	ENSSPAG00000017978	PABPN1L	72	48.241	Stegastes_partitus
ENSRNOG00000029558	Pabpn1l	100	65.809	ENSSSCG00000036367	PABPN1L	100	66.912	Sus_scrofa
ENSRNOG00000029558	Pabpn1l	65	48.045	ENSTRUG00000024725	PABPN1L	84	46.226	Takifugu_rubripes
ENSRNOG00000029558	Pabpn1l	100	62.633	ENSTTRG00000004691	PABPN1L	100	63.082	Tursiops_truncatus
ENSRNOG00000029558	Pabpn1l	55	55.844	ENSXETG00000011258	pabpn1l	96	50.000	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component