EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000029749 (Gene tree)
Gene ID: 295010
Gene Symbol: Pabpc4l
Alias: LOC295010|RGD1559517
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 1991 bases
Position: chr2:130656212-130658202
Accession: 1559517
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000017012	RRM_5	PF13893.6	5.6e-12	1	3
ENSRNOP00000017012	RRM_5	PF13893.6	5.6e-12	2	3
ENSRNOP00000017012	RRM_5	PF13893.6	5.6e-12	3	3
ENSRNOP00000017012	RRM_1	PF00076.22	3e-81	1	4
ENSRNOP00000017012	RRM_1	PF00076.22	3e-81	2	4
ENSRNOP00000017012	RRM_1	PF00076.22	3e-81	3	4
ENSRNOP00000017012	RRM_1	PF00076.22	3e-81	4	4

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000017012	-	1458	-	ENSRNOP00000017012	370 (aa)	-	D3ZGA4

Gene Model

Click here to download ENSRNOG00000029749's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000029749's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000029749	Pabpc4l	99	67.391	ENSRNOG00000028592	AABR07035074.1	59	67.391
ENSRNOG00000029749	Pabpc4l	96	36.585	ENSRNOG00000001069	Elavl1	96	36.585
ENSRNOG00000029749	Pabpc4l	99	61.436	ENSRNOG00000017367	Pabpc6	61	61.436
ENSRNOG00000029749	Pabpc4l	99	66.942	ENSRNOG00000008639	Pabpc1	77	66.942
ENSRNOG00000029749	Pabpc4l	99	57.703	ENSRNOG00000003354	Pabpc5	96	57.808
ENSRNOG00000029749	Pabpc4l	97	62.778	ENSRNOG00000014527	Pabpc2	59	62.778
ENSRNOG00000029749	Pabpc4l	99	56.667	ENSRNOG00000012750	Pabpc1l	64	56.667
ENSRNOG00000029749	Pabpc4l	96	34.940	ENSRNOG00000013752	Elavl3	90	34.940
ENSRNOG00000029749	Pabpc4l	96	36.145	ENSRNOG00000006853	Elavl2	89	36.145
ENSRNOG00000029749	Pabpc4l	98	37.173	ENSRNOG00000021181	Sf3b4	54	39.205
ENSRNOG00000029749	Pabpc4l	99	68.207	ENSRNOG00000015642	Pabpc4	59	68.207
ENSRNOG00000029749	Pabpc4l	96	36.709	ENSRNOG00000023601	Elavl4	86	36.709

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000029749	Pabpc4l	100	81.892	ENSG00000254535	PABPC4L	100	81.892	Homo_sapiens
ENSRNOG00000029749	Pabpc4l	100	81.081	ENSANAG00000017199	PABPC4L	87	81.081	Aotus_nancymaae
ENSRNOG00000029749	Pabpc4l	99	80.217	ENSBTAG00000046902	PABPC4L	99	80.217	Bos_taurus
ENSRNOG00000029749	Pabpc4l	100	81.622	ENSCJAG00000045332	PABPC4L	86	81.622	Callithrix_jacchus
ENSRNOG00000029749	Pabpc4l	99	67.663	ENSCAFG00020019182	-	54	67.663	Canis_lupus_dingo
ENSRNOG00000029749	Pabpc4l	99	80.217	ENSCHIG00000007231	PABPC4L	99	80.217	Capra_hircus
ENSRNOG00000029749	Pabpc4l	98	73.134	ENSCAPG00000000555	PABPC4L	100	73.134	Cavia_aperea
ENSRNOG00000029749	Pabpc4l	100	70.270	ENSCPOG00000033167	PABPC4L	100	70.270	Cavia_porcellus
ENSRNOG00000029749	Pabpc4l	100	81.351	ENSCCAG00000031681	PABPC4L	86	81.351	Cebus_capucinus
ENSRNOG00000029749	Pabpc4l	100	75.946	ENSCLAG00000017628	PABPC4L	100	75.946	Chinchilla_lanigera
ENSRNOG00000029749	Pabpc4l	100	79.730	ENSCANG00000037677	PABPC4L	100	79.730	Colobus_angolensis_palliatus
ENSRNOG00000029749	Pabpc4l	100	88.919	ENSCGRG00001002070	Pabpc4l	100	88.919	Cricetulus_griseus_chok1gshd
ENSRNOG00000029749	Pabpc4l	100	88.919	ENSCGRG00000020086	Pabpc4l	100	88.919	Cricetulus_griseus_crigri
ENSRNOG00000029749	Pabpc4l	100	80.000	ENSDNOG00000031077	PABPC4L	95	80.000	Dasypus_novemcinctus
ENSRNOG00000029749	Pabpc4l	99	78.320	ENSEASG00005007883	PABPC4L	99	78.320	Equus_asinus_asinus
ENSRNOG00000029749	Pabpc4l	99	78.591	ENSECAG00000031416	PABPC4L	99	78.591	Equus_caballus
ENSRNOG00000029749	Pabpc4l	99	79.404	ENSFCAG00000028270	PABPC4L	99	79.404	Felis_catus
ENSRNOG00000029749	Pabpc4l	99	73.984	ENSFDAG00000019606	PABPC4L	99	73.984	Fukomys_damarensis
ENSRNOG00000029749	Pabpc4l	100	81.351	ENSGGOG00000024991	PABPC4L	100	81.351	Gorilla_gorilla
ENSRNOG00000029749	Pabpc4l	99	75.339	ENSHGLG00000020104	PABPC4L	99	75.339	Heterocephalus_glaber_female
ENSRNOG00000029749	Pabpc4l	99	75.339	ENSHGLG00100020648	PABPC4L	99	75.339	Heterocephalus_glaber_male
ENSRNOG00000029749	Pabpc4l	100	80.593	ENSSTOG00000019472	PABPC4L	99	80.593	Ictidomys_tridecemlineatus
ENSRNOG00000029749	Pabpc4l	99	79.404	ENSJJAG00000004090	Pabpc4l	99	79.404	Jaculus_jaculus
ENSRNOG00000029749	Pabpc4l	100	89.189	ENSMAUG00000016313	Pabpc4l	100	89.189	Mesocricetus_auratus
ENSRNOG00000029749	Pabpc4l	100	80.811	ENSMICG00000029683	PABPC4L	100	80.811	Microcebus_murinus
ENSRNOG00000029749	Pabpc4l	100	90.541	ENSMOCG00000007551	Pabpc4l	100	90.541	Microtus_ochrogaster
ENSRNOG00000029749	Pabpc4l	100	92.973	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	92.973	Mus_caroli
ENSRNOG00000029749	Pabpc4l	100	93.514	ENSMUSG00000090919	Pabpc4l	100	93.514	Mus_musculus
ENSRNOG00000029749	Pabpc4l	100	93.784	MGP_PahariEiJ_G0026409	Pabpc4l	100	93.784	Mus_pahari
ENSRNOG00000029749	Pabpc4l	100	92.973	MGP_SPRETEiJ_G0025903	Pabpc4l	100	92.973	Mus_spretus
ENSRNOG00000029749	Pabpc4l	99	73.171	ENSMLUG00000008254	PABPC4L	99	73.171	Myotis_lucifugus
ENSRNOG00000029749	Pabpc4l	100	85.946	ENSNGAG00000001502	Pabpc4l	100	85.946	Nannospalax_galili
ENSRNOG00000029749	Pabpc4l	100	81.622	ENSNLEG00000019300	PABPC4L	100	81.622	Nomascus_leucogenys
ENSRNOG00000029749	Pabpc4l	100	74.324	ENSOGAG00000026166	PABPC4L	100	74.324	Otolemur_garnettii
ENSRNOG00000029749	Pabpc4l	99	81.424	ENSPPAG00000043745	PABPC4L	92	81.424	Pan_paniscus
ENSRNOG00000029749	Pabpc4l	99	79.404	ENSPPRG00000018628	PABPC4L	99	79.404	Panthera_pardus
ENSRNOG00000029749	Pabpc4l	99	79.404	ENSPTIG00000010106	PABPC4L	99	79.404	Panthera_tigris_altaica
ENSRNOG00000029749	Pabpc4l	99	81.424	ENSPTRG00000045513	-	77	81.424	Pan_troglodytes
ENSRNOG00000029749	Pabpc4l	100	90.270	ENSPEMG00000012565	Pabpc4l	100	90.270	Peromyscus_maniculatus_bairdii
ENSRNOG00000029749	Pabpc4l	100	81.351	ENSPCOG00000025578	PABPC4L	100	81.351	Propithecus_coquereli
ENSRNOG00000029749	Pabpc4l	100	78.919	ENSRBIG00000030229	PABPC4L	100	78.919	Rhinopithecus_bieti
ENSRNOG00000029749	Pabpc4l	100	78.649	ENSRROG00000020367	PABPC4L	100	78.649	Rhinopithecus_roxellana
ENSRNOG00000029749	Pabpc4l	100	80.541	ENSSBOG00000016382	PABPC4L	100	80.541	Saimiri_boliviensis_boliviensis
ENSRNOG00000029749	Pabpc4l	99	73.713	ENSSSCG00000009067	PABPC4L	99	73.713	Sus_scrofa
ENSRNOG00000029749	Pabpc4l	99	78.862	ENSUAMG00000001289	PABPC4L	99	78.862	Ursus_americanus
ENSRNOG00000029749	Pabpc4l	99	78.862	ENSUMAG00000014887	PABPC4L	99	78.862	Ursus_maritimus
ENSRNOG00000029749	Pabpc4l	96	67.073	ENSVVUG00000011060	-	75	67.073	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component