EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000030625 (Gene tree)
Gene ID: 24825
Gene Symbol: Tf
Alias: MGC93500|Tfn|Trf
Full Name: transferrin
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 47787 bases
Position: chr8:111673547-111721333
Accession: 3845
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000012725	MMR_HSR1	PF01926.23	3.2e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000045628	-	2324	-	ENSRNOP00000045637	698 (aa)	-	P12346
ENSRNOT00000012725	-	2978	-	ENSRNOP00000012725	979 (aa)	-	A0A0G2QC06

Gene Model

Click here to download ENSRNOG00000030625's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04066	HIF-1 signaling pathway	KEGG
rno04216	Ferroptosis	KEGG
rno04978	Mineral absorption	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000030625's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000030625	Tf	99	72.345	ENSAMEG00000000261	-	98	72.188	Ailuropoda_melanoleuca
ENSRNOG00000030625	Tf	99	72.919	ENSCAFG00000006540	-	98	72.876	Canis_familiaris
ENSRNOG00000030625	Tf	99	79.268	ENSJJAG00000018609	-	98	79.193	Jaculus_jaculus
ENSRNOG00000030625	Tf	99	65.628	ENSLAFG00000012465	-	98	65.609	Loxodonta_africana
ENSRNOG00000030625	Tf	98	76.458	ENSMOCG00000006609	-	98	76.458	Microtus_ochrogaster
ENSRNOG00000030625	Tf	98	89.074	ENSMUSG00000090639	Gm20425	98	89.074	Mus_musculus
ENSRNOG00000030625	Tf	99	69.900	ENSMLUG00000005332	-	98	69.959	Myotis_lucifugus
ENSRNOG00000030625	Tf	99	81.800	ENSNGAG00000024311	-	100	92.193	Nannospalax_galili

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001666	response to hypoxia	16479386.	IEP	Process
GO:0005576	extracellular region	-	IEA	Component
GO:0005576	extracellular region	-	ISO	Component
GO:0005604	basement membrane	1723977.	IDA	Component
GO:0005615	extracellular space	17350134.	IDA	Component
GO:0005768	endosome	-	ISO	Component
GO:0005769	early endosome	-	ISO	Component
GO:0005770	late endosome	-	ISO	Component
GO:0005905	clathrin-coated pit	-	ISO	Component
GO:0006826	iron ion transport	17373738.	IDA	Process
GO:0006826	iron ion transport	-	ISO	Process
GO:0006826	iron ion transport	12608731.	TAS	Process
GO:0006879	cellular iron ion homeostasis	12608731.	TAS	Process
GO:0006915	apoptotic process	-	ISS	Process
GO:0006953	acute-phase response	17417667.	IEP	Process
GO:0007015	actin filament organization	-	ISO	Process
GO:0007257	activation of JUN kinase activity	-	ISO	Process
GO:0008198	ferrous iron binding	-	ISO	Function
GO:0008199	ferric iron binding	17373738.	IDA	Function
GO:0009617	response to bacterium	-	ISO	Process
GO:0009925	basal plasma membrane	-	ISO	Component
GO:0009986	cell surface	-	ISO	Component
GO:0010288	response to lead ion	23007736.	IEP	Process
GO:0014070	response to organic cyclic compound	16519141.	IEP	Process
GO:0015091	ferric iron transmembrane transporter activity	-	IEA	Function
GO:0016020	membrane	-	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016324	apical plasma membrane	-	ISO	Component
GO:0030139	endocytic vesicle	-	ISO	Component
GO:0030316	osteoclast differentiation	-	ISO	Process
GO:0031232	extrinsic component of external side of plasma membrane	-	ISO	Component
GO:0031410	cytoplasmic vesicle	-	ISO	Component
GO:0031643	positive regulation of myelination	16480980.	IDA	Process
GO:0031982	vesicle	-	ISO	Component
GO:0034755	iron ion transmembrane transport	-	IEA	Process
GO:0034756	regulation of iron ion transport	-	ISO	Process
GO:0034986	iron chaperone activity	-	ISO	Function
GO:0042327	positive regulation of phosphorylation	-	ISO	Process
GO:0045178	basal part of cell	-	ISO	Component
GO:0045780	positive regulation of bone resorption	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0048260	positive regulation of receptor-mediated endocytosis	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051286	cell tip	17373738.	IDA	Component
GO:0055037	recycling endosome	-	ISO	Component
GO:0060395	SMAD protein signal transduction	-	ISO	Process
GO:0070371	ERK1 and ERK2 cascade	-	ISO	Process
GO:0070447	positive regulation of oligodendrocyte progenitor proliferation	23368675.	IDA	Process
GO:0071281	cellular response to iron ion	-	ISO	Process
GO:0071320	cellular response to cAMP	15831523.	IEP	Process
GO:0071372	cellular response to follicle-stimulating hormone stimulus	15831523.	IEP	Process
GO:0072512	trivalent inorganic cation transport	-	IEA	Process
GO:1990459	transferrin receptor binding	-	ISO	Function
GO:1990712	HFE-transferrin receptor complex	-	ISO	Component
GO:2000147	positive regulation of cell motility	-	ISO	Process