EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000030705 (Gene tree)
Gene ID: 366952
Gene Symbol: Cpsf1
Alias: LOC366952|MGC188689
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10713 bases
Position: chr7:117661661-117672373
Accession: 1306406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000070801	CPSF_A	PF03178.15	2.9e-92	1	1
ENSRNOP00000061764	CPSF_A	PF03178.15	4.1e-69	1	2
ENSRNOP00000061764	CPSF_A	PF03178.15	4.1e-69	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000086796	-	4597	XM_006241853	ENSRNOP00000070801	1439 (aa)	XP_006241915	B5DEL2
ENSRNOT00000066244	-	4374	-	ENSRNOP00000061764	1386 (aa)	-	D4A0H5

Gene Model

Click here to download ENSRNOG00000030705's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000030705's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000030705	Cpsf1	100	96.535	ENSG00000071894	CPSF1	100	96.535	Homo_sapiens
ENSRNOG00000030705	Cpsf1	100	77.861	ENSAPOG00000019621	cpsf1	100	78.064	Acanthochromis_polyacanthus
ENSRNOG00000030705	Cpsf1	97	94.782	ENSAMEG00000005557	CPSF1	100	94.782	Ailuropoda_melanoleuca
ENSRNOG00000030705	Cpsf1	100	78.502	ENSACIG00000006112	cpsf1	100	78.849	Amphilophus_citrinellus
ENSRNOG00000030705	Cpsf1	100	79.325	ENSAOCG00000007120	cpsf1	100	79.531	Amphiprion_ocellaris
ENSRNOG00000030705	Cpsf1	100	79.669	ENSAPEG00000005755	cpsf1	100	79.807	Amphiprion_percula
ENSRNOG00000030705	Cpsf1	100	77.838	ENSATEG00000011097	cpsf1	100	78.176	Anabas_testudineus
ENSRNOG00000030705	Cpsf1	93	81.534	ENSACAG00000009655	CPSF1	100	81.534	Anolis_carolinensis
ENSRNOG00000030705	Cpsf1	100	96.602	ENSANAG00000036514	CPSF1	100	96.602	Aotus_nancymaae
ENSRNOG00000030705	Cpsf1	100	77.670	ENSACLG00000012231	cpsf1	99	79.055	Astatotilapia_calliptera
ENSRNOG00000030705	Cpsf1	100	74.771	ENSAMXG00000008485	cpsf1	100	74.771	Astyanax_mexicanus
ENSRNOG00000030705	Cpsf1	100	94.350	ENSBTAG00000008355	CPSF1	100	94.597	Bos_taurus
ENSRNOG00000030705	Cpsf1	100	32.301	WBGene00022301	cpsf-1	100	40.000	Caenorhabditis_elegans
ENSRNOG00000030705	Cpsf1	100	96.671	ENSCJAG00000021421	CPSF1	100	96.671	Callithrix_jacchus
ENSRNOG00000030705	Cpsf1	97	96.137	ENSCAFG00000001600	CPSF1	100	96.206	Canis_familiaris
ENSRNOG00000030705	Cpsf1	100	96.330	ENSCAFG00020020821	CPSF1	100	96.330	Canis_lupus_dingo
ENSRNOG00000030705	Cpsf1	100	90.707	ENSCHIG00000015833	CPSF1	100	90.707	Capra_hircus
ENSRNOG00000030705	Cpsf1	100	97.365	ENSTSYG00000028560	CPSF1	100	97.365	Carlito_syrichta
ENSRNOG00000030705	Cpsf1	97	96.413	ENSCAPG00000014921	CPSF1	99	96.413	Cavia_aperea
ENSRNOG00000030705	Cpsf1	100	96.047	ENSCPOG00000011448	CPSF1	100	96.047	Cavia_porcellus
ENSRNOG00000030705	Cpsf1	100	96.741	ENSCCAG00000037658	CPSF1	100	96.741	Cebus_capucinus
ENSRNOG00000030705	Cpsf1	100	96.463	ENSCATG00000037234	CPSF1	99	98.209	Cercocebus_atys
ENSRNOG00000030705	Cpsf1	100	97.779	ENSCLAG00000012166	CPSF1	100	97.779	Chinchilla_lanigera
ENSRNOG00000030705	Cpsf1	100	96.602	ENSCSAG00000008502	CPSF1	100	96.602	Chlorocebus_sabaeus
ENSRNOG00000030705	Cpsf1	99	87.745	ENSCPBG00000018910	CPSF1	96	87.745	Chrysemys_picta_bellii
ENSRNOG00000030705	Cpsf1	96	48.635	ENSCING00000000514	-	100	48.563	Ciona_intestinalis
ENSRNOG00000030705	Cpsf1	99	48.451	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSRNOG00000030705	Cpsf1	99	90.833	ENSCANG00000032760	CPSF1	99	90.833	Colobus_angolensis_palliatus
ENSRNOG00000030705	Cpsf1	100	99.237	ENSCGRG00001016344	Cpsf1	100	99.237	Cricetulus_griseus_chok1gshd
ENSRNOG00000030705	Cpsf1	100	96.738	ENSCGRG00000003118	Cpsf1	100	96.738	Cricetulus_griseus_crigri
ENSRNOG00000030705	Cpsf1	100	77.793	ENSCSEG00000013464	cpsf1	100	78.001	Cynoglossus_semilaevis
ENSRNOG00000030705	Cpsf1	85	77.004	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSRNOG00000030705	Cpsf1	100	79.517	ENSDARG00000034178	cpsf1	100	79.586	Danio_rerio
ENSRNOG00000030705	Cpsf1	59	96.522	ENSDNOG00000043654	CPSF1	94	96.522	Dasypus_novemcinctus
ENSRNOG00000030705	Cpsf1	97	96.987	ENSDORG00000006278	Cpsf1	99	96.987	Dipodomys_ordii
ENSRNOG00000030705	Cpsf1	100	45.253	FBgn0024698	Cpsf160	100	45.148	Drosophila_melanogaster
ENSRNOG00000030705	Cpsf1	83	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSRNOG00000030705	Cpsf1	100	97.091	ENSEASG00005010774	CPSF1	100	97.091	Equus_asinus_asinus
ENSRNOG00000030705	Cpsf1	100	97.091	ENSECAG00000022209	CPSF1	100	97.091	Equus_caballus
ENSRNOG00000030705	Cpsf1	100	94.740	ENSEEUG00000000471	CPSF1	100	94.740	Erinaceus_europaeus
ENSRNOG00000030705	Cpsf1	100	77.862	ENSELUG00000012271	cpsf1	100	78.204	Esox_lucius
ENSRNOG00000030705	Cpsf1	100	97.571	ENSFDAG00000016060	CPSF1	100	97.571	Fukomys_damarensis
ENSRNOG00000030705	Cpsf1	100	76.950	ENSFHEG00000016801	cpsf1	100	77.019	Fundulus_heteroclitus
ENSRNOG00000030705	Cpsf1	100	78.153	ENSGMOG00000000796	cpsf1	100	78.360	Gadus_morhua
ENSRNOG00000030705	Cpsf1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSRNOG00000030705	Cpsf1	100	78.336	ENSGACG00000008703	cpsf1	100	78.380	Gasterosteus_aculeatus
ENSRNOG00000030705	Cpsf1	100	84.083	ENSGAGG00000004276	CPSF1	98	87.741	Gopherus_agassizii
ENSRNOG00000030705	Cpsf1	100	96.600	ENSGGOG00000016185	CPSF1	100	96.600	Gorilla_gorilla
ENSRNOG00000030705	Cpsf1	100	79.889	ENSHBUG00000018900	cpsf1	100	80.028	Haplochromis_burtoni
ENSRNOG00000030705	Cpsf1	100	97.641	ENSHGLG00000016139	CPSF1	100	97.641	Heterocephalus_glaber_female
ENSRNOG00000030705	Cpsf1	100	97.571	ENSHGLG00100009750	CPSF1	100	97.571	Heterocephalus_glaber_male
ENSRNOG00000030705	Cpsf1	100	77.242	ENSHCOG00000018509	cpsf1	100	77.158	Hippocampus_comes
ENSRNOG00000030705	Cpsf1	100	76.272	ENSIPUG00000011259	cpsf1	100	76.272	Ictalurus_punctatus
ENSRNOG00000030705	Cpsf1	97	97.069	ENSSTOG00000009957	CPSF1	99	97.069	Ictidomys_tridecemlineatus
ENSRNOG00000030705	Cpsf1	100	98.057	ENSJJAG00000023002	Cpsf1	100	98.057	Jaculus_jaculus
ENSRNOG00000030705	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSRNOG00000030705	Cpsf1	100	77.370	ENSLBEG00000003601	cpsf1	100	77.847	Labrus_bergylta
ENSRNOG00000030705	Cpsf1	88	81.971	ENSLACG00000000233	CPSF1	100	69.299	Latimeria_chalumnae
ENSRNOG00000030705	Cpsf1	100	78.591	ENSLOCG00000008484	cpsf1	100	78.867	Lepisosteus_oculatus
ENSRNOG00000030705	Cpsf1	97	95.347	ENSLAFG00000022601	CPSF1	100	95.347	Loxodonta_africana
ENSRNOG00000030705	Cpsf1	100	96.463	ENSMFAG00000037013	CPSF1	99	97.910	Macaca_fascicularis
ENSRNOG00000030705	Cpsf1	100	96.533	ENSMMUG00000007380	CPSF1	100	96.533	Macaca_mulatta
ENSRNOG00000030705	Cpsf1	97	96.485	ENSMNEG00000043564	CPSF1	100	96.485	Macaca_nemestrina
ENSRNOG00000030705	Cpsf1	100	96.463	ENSMLEG00000043010	CPSF1	99	97.910	Mandrillus_leucophaeus
ENSRNOG00000030705	Cpsf1	100	78.538	ENSMAMG00000003803	cpsf1	100	78.741	Mastacembelus_armatus
ENSRNOG00000030705	Cpsf1	100	77.739	ENSMZEG00005001168	cpsf1	100	77.878	Maylandia_zebra
ENSRNOG00000030705	Cpsf1	100	99.028	ENSMAUG00000003601	Cpsf1	100	99.028	Mesocricetus_auratus
ENSRNOG00000030705	Cpsf1	100	97.294	ENSMICG00000015767	CPSF1	100	97.294	Microcebus_murinus
ENSRNOG00000030705	Cpsf1	100	98.959	ENSMOCG00000022758	Cpsf1	100	98.959	Microtus_ochrogaster
ENSRNOG00000030705	Cpsf1	100	79.100	ENSMMOG00000021245	cpsf1	100	79.239	Mola_mola
ENSRNOG00000030705	Cpsf1	100	93.030	ENSMODG00000010755	CPSF1	100	93.030	Monodelphis_domestica
ENSRNOG00000030705	Cpsf1	100	77.695	ENSMALG00000020545	cpsf1	100	77.898	Monopterus_albus
ENSRNOG00000030705	Cpsf1	100	99.445	MGP_CAROLIEiJ_G0019936	Cpsf1	100	99.445	Mus_caroli
ENSRNOG00000030705	Cpsf1	100	99.306	ENSMUSG00000034022	Cpsf1	100	99.306	Mus_musculus
ENSRNOG00000030705	Cpsf1	100	99.375	MGP_PahariEiJ_G0019946	Cpsf1	100	99.375	Mus_pahari
ENSRNOG00000030705	Cpsf1	100	99.375	MGP_SPRETEiJ_G0020839	Cpsf1	100	99.375	Mus_spretus
ENSRNOG00000030705	Cpsf1	94	95.701	ENSMPUG00000006419	CPSF1	93	95.701	Mustela_putorius_furo
ENSRNOG00000030705	Cpsf1	100	98.265	ENSNGAG00000022460	Cpsf1	100	98.265	Nannospalax_galili
ENSRNOG00000030705	Cpsf1	100	74.983	ENSNBRG00000000813	cpsf1	100	74.983	Neolamprologus_brichardi
ENSRNOG00000030705	Cpsf1	89	85.460	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSRNOG00000030705	Cpsf1	85	97.674	ENSMEUG00000014922	CPSF1	85	97.674	Notamacropus_eugenii
ENSRNOG00000030705	Cpsf1	60	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSRNOG00000030705	Cpsf1	100	97.918	ENSODEG00000013995	CPSF1	100	97.918	Octodon_degus
ENSRNOG00000030705	Cpsf1	100	80.055	ENSONIG00000007676	cpsf1	100	80.194	Oreochromis_niloticus
ENSRNOG00000030705	Cpsf1	60	90.278	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSRNOG00000030705	Cpsf1	100	77.536	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSRNOG00000030705	Cpsf1	100	77.672	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSRNOG00000030705	Cpsf1	100	77.520	ENSORLG00015009979	cpsf1	100	77.589	Oryzias_latipes_hsok
ENSRNOG00000030705	Cpsf1	100	77.763	ENSOMEG00000011849	cpsf1	100	77.967	Oryzias_melastigma
ENSRNOG00000030705	Cpsf1	100	97.087	ENSOGAG00000000315	CPSF1	100	97.087	Otolemur_garnettii
ENSRNOG00000030705	Cpsf1	100	96.602	ENSPPAG00000019280	CPSF1	100	96.602	Pan_paniscus
ENSRNOG00000030705	Cpsf1	100	96.602	ENSPTRG00000049288	-	100	96.602	Pan_troglodytes
ENSRNOG00000030705	Cpsf1	100	94.956	ENSPTRG00000051253	-	100	94.956	Pan_troglodytes
ENSRNOG00000030705	Cpsf1	97	96.341	ENSPANG00000015005	CPSF1	100	96.341	Papio_anubis
ENSRNOG00000030705	Cpsf1	100	80.484	ENSPKIG00000002582	cpsf1	100	81.032	Paramormyrops_kingsleyae
ENSRNOG00000030705	Cpsf1	100	92.961	ENSPCIG00000009035	CPSF1	100	92.961	Phascolarctos_cinereus
ENSRNOG00000030705	Cpsf1	100	76.475	ENSPFOG00000012870	cpsf1	100	76.475	Poecilia_formosa
ENSRNOG00000030705	Cpsf1	100	76.287	ENSPREG00000016307	cpsf1	100	76.355	Poecilia_reticulata
ENSRNOG00000030705	Cpsf1	100	88.627	ENSPPYG00000018973	CPSF1	100	88.627	Pongo_abelii
ENSRNOG00000030705	Cpsf1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSRNOG00000030705	Cpsf1	100	93.273	ENSPCOG00000020001	CPSF1	100	93.273	Propithecus_coquereli
ENSRNOG00000030705	Cpsf1	91	98.857	ENSPVAG00000006761	CPSF1	91	98.857	Pteropus_vampyrus
ENSRNOG00000030705	Cpsf1	100	78.850	ENSPNYG00000004906	cpsf1	100	78.987	Pundamilia_nyererei
ENSRNOG00000030705	Cpsf1	100	75.035	ENSPNAG00000024395	cpsf1	100	75.035	Pygocentrus_nattereri
ENSRNOG00000030705	Cpsf1	100	96.602	ENSRBIG00000044907	CPSF1	100	96.602	Rhinopithecus_bieti
ENSRNOG00000030705	Cpsf1	100	96.533	ENSRROG00000044861	CPSF1	100	96.533	Rhinopithecus_roxellana
ENSRNOG00000030705	Cpsf1	97	96.485	ENSSBOG00000027177	CPSF1	100	96.485	Saimiri_boliviensis_boliviensis
ENSRNOG00000030705	Cpsf1	100	92.961	ENSSHAG00000006500	CPSF1	100	92.961	Sarcophilus_harrisii
ENSRNOG00000030705	Cpsf1	100	78.084	ENSSFOG00015004606	cpsf1	100	81.368	Scleropages_formosus
ENSRNOG00000030705	Cpsf1	100	77.966	ENSSMAG00000020547	cpsf1	100	78.102	Scophthalmus_maximus
ENSRNOG00000030705	Cpsf1	100	79.294	ENSSDUG00000001100	cpsf1	100	79.640	Seriola_dumerili
ENSRNOG00000030705	Cpsf1	100	79.626	ENSSLDG00000003619	cpsf1	100	79.695	Seriola_lalandi_dorsalis
ENSRNOG00000030705	Cpsf1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSRNOG00000030705	Cpsf1	96	87.815	ENSSPUG00000014396	CPSF1	100	87.815	Sphenodon_punctatus
ENSRNOG00000030705	Cpsf1	100	78.049	ENSSPAG00000005349	cpsf1	100	78.252	Stegastes_partitus
ENSRNOG00000030705	Cpsf1	100	95.568	ENSSSCG00000005906	CPSF1	100	95.568	Sus_scrofa
ENSRNOG00000030705	Cpsf1	96	78.136	ENSTRUG00000013134	cpsf1	99	78.276	Takifugu_rubripes
ENSRNOG00000030705	Cpsf1	100	78.763	ENSTNIG00000014027	cpsf1	100	78.832	Tetraodon_nigroviridis
ENSRNOG00000030705	Cpsf1	77	88.793	ENSTBEG00000001756	CPSF1	91	88.793	Tupaia_belangeri
ENSRNOG00000030705	Cpsf1	90	97.064	ENSTTRG00000001937	CPSF1	90	97.064	Tursiops_truncatus
ENSRNOG00000030705	Cpsf1	97	96.638	ENSUAMG00000006476	CPSF1	98	96.638	Ursus_americanus
ENSRNOG00000030705	Cpsf1	100	77.477	ENSXCOG00000003608	cpsf1	100	77.685	Xiphophorus_couchianus
ENSRNOG00000030705	Cpsf1	100	77.200	ENSXMAG00000005798	cpsf1	100	77.408	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISO	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0019899	enzyme binding	-	IEA	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0035925	mRNA 3'-UTR AU-rich region binding	-	IEA	Function
GO:0035925	mRNA 3'-UTR AU-rich region binding	-	ISO	Function