EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000031173 (Gene tree)
Gene ID: 64635
Gene Symbol: Snd1
Alias: SND p102|U83883
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 399292 bases
Position: chr4:55772377-56171668
Accession: 631340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000045936	TUDOR	PF00567.24	1.3e-28	1	1
ENSRNOP00000041531	TUDOR	PF00567.24	2.3e-28	1	1
ENSRNOP00000041531	SNase	PF00565.17	2.3e-68	1	5
ENSRNOP00000041531	SNase	PF00565.17	2.3e-68	2	5
ENSRNOP00000041531	SNase	PF00565.17	2.3e-68	3	5
ENSRNOP00000041531	SNase	PF00565.17	2.3e-68	4	5
ENSRNOP00000041531	SNase	PF00565.17	2.3e-68	5	5
ENSRNOP00000045936	SNase	PF00565.17	1.8e-67	1	5
ENSRNOP00000045936	SNase	PF00565.17	1.8e-67	2	5
ENSRNOP00000045936	SNase	PF00565.17	1.8e-67	3	5
ENSRNOP00000045936	SNase	PF00565.17	1.8e-67	4	5
ENSRNOP00000045936	SNase	PF00565.17	1.8e-67	5	5

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000047698	-	3448	-	ENSRNOP00000041531	909 (aa)	-	Q66X93
ENSRNOT00000048252	-	2908	-	ENSRNOP00000045936	881 (aa)	-	D4A8Y5

Gene Model

Click here to download ENSRNOG00000031173's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000031173's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000031173	Snd1	99	97.247	ENSG00000197157	SND1	99	97.247	Homo_sapiens
ENSRNOG00000031173	Snd1	100	83.653	ENSAPOG00000017599	snd1	98	84.564	Acanthochromis_polyacanthus
ENSRNOG00000031173	Snd1	100	96.054	ENSAMEG00000004664	SND1	94	97.033	Ailuropoda_melanoleuca
ENSRNOG00000031173	Snd1	100	80.813	ENSACIG00000003551	snd1	98	81.635	Amphilophus_citrinellus
ENSRNOG00000031173	Snd1	100	83.427	ENSAOCG00000014166	snd1	98	84.340	Amphiprion_ocellaris
ENSRNOG00000031173	Snd1	100	83.427	ENSAPEG00000007067	snd1	98	84.340	Amphiprion_percula
ENSRNOG00000031173	Snd1	98	82.874	ENSATEG00000018475	snd1	88	83.808	Anabas_testudineus
ENSRNOG00000031173	Snd1	99	97.687	ENSANAG00000034463	SND1	99	97.851	Aotus_nancymaae
ENSRNOG00000031173	Snd1	100	83.089	ENSACLG00000022897	snd1	98	83.929	Astatotilapia_calliptera
ENSRNOG00000031173	Snd1	100	83.465	ENSAMXG00000016318	snd1	98	84.187	Astyanax_mexicanus
ENSRNOG00000031173	Snd1	99	97.467	ENSBTAG00000010692	SND1	99	97.467	Bos_taurus
ENSRNOG00000031173	Snd1	99	45.727	WBGene00006626	tsn-1	98	47.085	Caenorhabditis_elegans
ENSRNOG00000031173	Snd1	99	97.247	ENSCJAG00000017668	SND1	99	97.398	Callithrix_jacchus
ENSRNOG00000031173	Snd1	99	97.357	ENSCAFG00000001700	SND1	99	97.357	Canis_familiaris
ENSRNOG00000031173	Snd1	99	97.357	ENSCAFG00020021639	SND1	99	97.357	Canis_lupus_dingo
ENSRNOG00000031173	Snd1	99	97.577	ENSCHIG00000023390	SND1	99	97.577	Capra_hircus
ENSRNOG00000031173	Snd1	75	96.831	ENSTSYG00000004979	SND1	96	97.887	Carlito_syrichta
ENSRNOG00000031173	Snd1	100	84.009	ENSCAPG00000010677	SND1	98	84.710	Cavia_aperea
ENSRNOG00000031173	Snd1	99	97.467	ENSCPOG00000006251	SND1	99	97.467	Cavia_porcellus
ENSRNOG00000031173	Snd1	99	97.577	ENSCCAG00000036847	SND1	99	97.577	Cebus_capucinus
ENSRNOG00000031173	Snd1	99	97.467	ENSCATG00000035214	SND1	99	97.624	Cercocebus_atys
ENSRNOG00000031173	Snd1	100	96.158	ENSCLAG00000011796	SND1	99	97.137	Chinchilla_lanigera
ENSRNOG00000031173	Snd1	99	97.467	ENSCSAG00000010182	SND1	99	97.467	Chlorocebus_sabaeus
ENSRNOG00000031173	Snd1	80	86.275	ENSCHOG00000002218	SND1	86	87.255	Choloepus_hoffmanni
ENSRNOG00000031173	Snd1	100	91.199	ENSCPBG00000018094	SND1	98	92.040	Chrysemys_picta_bellii
ENSRNOG00000031173	Snd1	100	56.589	ENSCING00000000524	-	98	57.080	Ciona_intestinalis
ENSRNOG00000031173	Snd1	100	57.383	ENSCSAVG00000008807	-	98	57.761	Ciona_savignyi
ENSRNOG00000031173	Snd1	99	97.467	ENSCANG00000035119	SND1	99	97.467	Colobus_angolensis_palliatus
ENSRNOG00000031173	Snd1	99	97.797	ENSCGRG00001022514	Snd1	99	97.797	Cricetulus_griseus_chok1gshd
ENSRNOG00000031173	Snd1	99	96.719	ENSCGRG00000012277	Snd1	99	98.077	Cricetulus_griseus_crigri
ENSRNOG00000031173	Snd1	100	82.437	ENSCSEG00000008661	snd1	98	83.669	Cynoglossus_semilaevis
ENSRNOG00000031173	Snd1	100	83.653	ENSCVAG00000010316	snd1	100	83.103	Cyprinodon_variegatus
ENSRNOG00000031173	Snd1	100	84.009	ENSDARG00000006766	snd1	97	87.184	Danio_rerio
ENSRNOG00000031173	Snd1	100	93.687	ENSDNOG00000006795	SND1	100	94.927	Dasypus_novemcinctus
ENSRNOG00000031173	Snd1	99	97.797	ENSDORG00000000336	Snd1	99	97.797	Dipodomys_ordii
ENSRNOG00000031173	Snd1	99	49.945	FBgn0035121	Tudor-SN	97	50.766	Drosophila_melanogaster
ENSRNOG00000031173	Snd1	92	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSRNOG00000031173	Snd1	65	68.378	ENSEBUG00000014201	-	85	76.344	Eptatretus_burgeri
ENSRNOG00000031173	Snd1	99	95.779	ENSEASG00005008513	SND1	99	95.779	Equus_asinus_asinus
ENSRNOG00000031173	Snd1	99	97.357	ENSECAG00000011451	SND1	99	97.357	Equus_caballus
ENSRNOG00000031173	Snd1	99	87.179	ENSEEUG00000014737	SND1	98	87.151	Erinaceus_europaeus
ENSRNOG00000031173	Snd1	99	82.346	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSRNOG00000031173	Snd1	99	97.357	ENSFCAG00000008289	SND1	99	97.357	Felis_catus
ENSRNOG00000031173	Snd1	99	97.577	ENSFDAG00000015881	SND1	99	97.577	Fukomys_damarensis
ENSRNOG00000031173	Snd1	100	81.203	ENSFHEG00000004093	snd1	97	84.051	Fundulus_heteroclitus
ENSRNOG00000031173	Snd1	64	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
ENSRNOG00000031173	Snd1	100	83.766	ENSGAFG00000008421	snd1	99	84.555	Gambusia_affinis
ENSRNOG00000031173	Snd1	100	53.587	ENSGACG00000019793	snd1	98	54.204	Gasterosteus_aculeatus
ENSRNOG00000031173	Snd1	99	97.467	ENSGGOG00000009614	SND1	99	97.624	Gorilla_gorilla
ENSRNOG00000031173	Snd1	100	83.089	ENSHBUG00000019135	snd1	99	83.929	Haplochromis_burtoni
ENSRNOG00000031173	Snd1	99	97.357	ENSHGLG00000003618	SND1	99	97.357	Heterocephalus_glaber_female
ENSRNOG00000031173	Snd1	100	96.158	ENSHGLG00100012449	SND1	100	97.127	Heterocephalus_glaber_male
ENSRNOG00000031173	Snd1	100	82.751	ENSHCOG00000005266	snd1	98	83.893	Hippocampus_comes
ENSRNOG00000031173	Snd1	100	82.677	ENSIPUG00000013279	snd1	98	83.426	Ictalurus_punctatus
ENSRNOG00000031173	Snd1	99	97.797	ENSSTOG00000002140	SND1	99	97.797	Ictidomys_tridecemlineatus
ENSRNOG00000031173	Snd1	99	97.907	ENSJJAG00000009561	Snd1	99	97.907	Jaculus_jaculus
ENSRNOG00000031173	Snd1	100	83.427	ENSKMAG00000016997	snd1	98	84.452	Kryptolebias_marmoratus
ENSRNOG00000031173	Snd1	100	84.939	ENSLBEG00000013563	snd1	98	82.998	Labrus_bergylta
ENSRNOG00000031173	Snd1	100	83.911	ENSLOCG00000015537	snd1	98	85.033	Lepisosteus_oculatus
ENSRNOG00000031173	Snd1	100	95.593	ENSLAFG00000009696	SND1	99	96.586	Loxodonta_africana
ENSRNOG00000031173	Snd1	99	97.467	ENSMFAG00000038114	SND1	99	97.624	Macaca_fascicularis
ENSRNOG00000031173	Snd1	99	97.467	ENSMMUG00000015432	SND1	99	97.467	Macaca_mulatta
ENSRNOG00000031173	Snd1	99	97.467	ENSMNEG00000039808	SND1	100	97.627	Macaca_nemestrina
ENSRNOG00000031173	Snd1	99	97.357	ENSMLEG00000029040	SND1	100	97.514	Mandrillus_leucophaeus
ENSRNOG00000031173	Snd1	100	83.315	ENSMAMG00000011739	snd1	98	84.152	Mastacembelus_armatus
ENSRNOG00000031173	Snd1	100	83.089	ENSMZEG00005005681	snd1	98	83.929	Maylandia_zebra
ENSRNOG00000031173	Snd1	99	97.577	ENSMICG00000000097	SND1	99	97.577	Microcebus_murinus
ENSRNOG00000031173	Snd1	99	98.348	ENSMOCG00000005040	Snd1	99	98.348	Microtus_ochrogaster
ENSRNOG00000031173	Snd1	100	83.315	ENSMMOG00000001795	snd1	98	84.228	Mola_mola
ENSRNOG00000031173	Snd1	99	94.649	ENSMODG00000015182	SND1	98	94.637	Monodelphis_domestica
ENSRNOG00000031173	Snd1	100	82.864	ENSMALG00000012071	snd1	98	83.705	Monopterus_albus
ENSRNOG00000031173	Snd1	99	99.009	MGP_CAROLIEiJ_G0028159	Snd1	99	99.323	Mus_caroli
ENSRNOG00000031173	Snd1	99	98.789	ENSMUSG00000001424	Snd1	99	98.789	Mus_musculus
ENSRNOG00000031173	Snd1	99	99.009	MGP_PahariEiJ_G0021917	Snd1	99	99.323	Mus_pahari
ENSRNOG00000031173	Snd1	99	99.009	MGP_SPRETEiJ_G0029159	Snd1	99	99.009	Mus_spretus
ENSRNOG00000031173	Snd1	100	96.271	ENSMPUG00000006545	SND1	99	97.247	Mustela_putorius_furo
ENSRNOG00000031173	Snd1	99	94.525	ENSMLUG00000017130	SND1	99	95.866	Myotis_lucifugus
ENSRNOG00000031173	Snd1	99	98.238	ENSNGAG00000011186	Snd1	99	98.238	Nannospalax_galili
ENSRNOG00000031173	Snd1	100	82.976	ENSNBRG00000006681	snd1	98	83.817	Neolamprologus_brichardi
ENSRNOG00000031173	Snd1	99	97.357	ENSNLEG00000012263	SND1	100	97.627	Nomascus_leucogenys
ENSRNOG00000031173	Snd1	92	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSRNOG00000031173	Snd1	100	97.250	ENSODEG00000011502	SND1	100	97.250	Octodon_degus
ENSRNOG00000031173	Snd1	100	82.864	ENSONIG00000011481	snd1	96	83.705	Oreochromis_niloticus
ENSRNOG00000031173	Snd1	99	92.873	ENSOANG00000000817	SND1	98	93.184	Ornithorhynchus_anatinus
ENSRNOG00000031173	Snd1	100	95.480	ENSOCUG00000001620	SND1	99	96.366	Oryctolagus_cuniculus
ENSRNOG00000031173	Snd1	100	82.751	ENSORLG00000015201	snd1	98	83.575	Oryzias_latipes
ENSRNOG00000031173	Snd1	100	82.864	ENSORLG00020013991	snd1	98	83.687	Oryzias_latipes_hni
ENSRNOG00000031173	Snd1	100	82.864	ENSORLG00015012436	snd1	98	83.687	Oryzias_latipes_hsok
ENSRNOG00000031173	Snd1	100	82.976	ENSOMEG00000006406	snd1	98	84.004	Oryzias_melastigma
ENSRNOG00000031173	Snd1	99	96.923	ENSOGAG00000013356	SND1	94	96.923	Otolemur_garnettii
ENSRNOG00000031173	Snd1	100	93.559	ENSOARG00000002149	SND1	100	94.915	Ovis_aries
ENSRNOG00000031173	Snd1	99	97.357	ENSPPAG00000042947	SND1	99	97.357	Pan_paniscus
ENSRNOG00000031173	Snd1	99	97.357	ENSPPRG00000004494	SND1	99	97.357	Panthera_pardus
ENSRNOG00000031173	Snd1	99	97.247	ENSPTIG00000014214	SND1	99	97.247	Panthera_tigris_altaica
ENSRNOG00000031173	Snd1	99	97.357	ENSPTRG00000023911	SND1	99	97.511	Pan_troglodytes
ENSRNOG00000031173	Snd1	99	96.267	ENSPANG00000011997	SND1	99	97.624	Papio_anubis
ENSRNOG00000031173	Snd1	100	80.425	ENSPKIG00000023494	snd1	98	81.465	Paramormyrops_kingsleyae
ENSRNOG00000031173	Snd1	94	81.557	ENSPMGG00000003629	snd1	100	82.395	Periophthalmus_magnuspinnatus
ENSRNOG00000031173	Snd1	99	98.458	ENSPEMG00000010240	Snd1	99	98.458	Peromyscus_maniculatus_bairdii
ENSRNOG00000031173	Snd1	99	72.429	ENSPMAG00000007915	-	99	73.333	Petromyzon_marinus
ENSRNOG00000031173	Snd1	99	94.872	ENSPCIG00000011561	SND1	98	94.860	Phascolarctos_cinereus
ENSRNOG00000031173	Snd1	100	82.638	ENSPFOG00000001557	snd1	98	84.116	Poecilia_formosa
ENSRNOG00000031173	Snd1	99	83.982	ENSPLAG00000018459	snd1	95	84.116	Poecilia_latipinna
ENSRNOG00000031173	Snd1	99	84.427	ENSPMEG00000006803	snd1	98	84.564	Poecilia_mexicana
ENSRNOG00000031173	Snd1	100	83.540	ENSPREG00000002189	snd1	98	84.452	Poecilia_reticulata
ENSRNOG00000031173	Snd1	92	97.352	ENSPPYG00000017972	SND1	98	97.345	Pongo_abelii
ENSRNOG00000031173	Snd1	99	85.284	ENSPCAG00000011305	SND1	98	85.251	Procavia_capensis
ENSRNOG00000031173	Snd1	99	97.247	ENSPCOG00000026791	SND1	100	97.401	Propithecus_coquereli
ENSRNOG00000031173	Snd1	99	95.485	ENSPVAG00000013945	SND1	99	95.485	Pteropus_vampyrus
ENSRNOG00000031173	Snd1	100	83.089	ENSPNYG00000000932	snd1	98	83.929	Pundamilia_nyererei
ENSRNOG00000031173	Snd1	100	83.352	ENSPNAG00000001206	snd1	98	84.076	Pygocentrus_nattereri
ENSRNOG00000031173	Snd1	75	97.338	ENSRBIG00000027782	-	93	98.479	Rhinopithecus_bieti
ENSRNOG00000031173	Snd1	99	97.467	ENSRROG00000033020	SND1	99	97.467	Rhinopithecus_roxellana
ENSRNOG00000031173	Snd1	99	97.467	ENSSBOG00000032461	SND1	99	97.624	Saimiri_boliviensis_boliviensis
ENSRNOG00000031173	Snd1	99	90.611	ENSSHAG00000015359	SND1	100	91.554	Sarcophilus_harrisii
ENSRNOG00000031173	Snd1	98	83.130	ENSSFOG00015001103	snd1	98	83.130	Scleropages_formosus
ENSRNOG00000031173	Snd1	100	82.437	ENSSMAG00000001932	snd1	93	83.557	Scophthalmus_maximus
ENSRNOG00000031173	Snd1	100	83.202	ENSSDUG00000002699	snd1	92	84.116	Seriola_dumerili
ENSRNOG00000031173	Snd1	100	75.761	ENSSLDG00000001950	snd1	98	76.734	Seriola_lalandi_dorsalis
ENSRNOG00000031173	Snd1	86	97.170	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSRNOG00000031173	Snd1	75	85.913	ENSSPUG00000017586	SND1	96	86.609	Sphenodon_punctatus
ENSRNOG00000031173	Snd1	75	85.336	ENSSPAG00000021398	snd1	96	86.038	Stegastes_partitus
ENSRNOG00000031173	Snd1	99	97.026	ENSSSCG00000016590	SND1	99	97.026	Sus_scrofa
ENSRNOG00000031173	Snd1	100	82.812	ENSTRUG00000014067	snd1	98	83.110	Takifugu_rubripes
ENSRNOG00000031173	Snd1	100	83.133	ENSTNIG00000011019	snd1	98	83.669	Tetraodon_nigroviridis
ENSRNOG00000031173	Snd1	96	90.448	ENSTBEG00000003999	SND1	100	91.863	Tupaia_belangeri
ENSRNOG00000031173	Snd1	99	92.731	ENSTTRG00000006059	SND1	99	92.731	Tursiops_truncatus
ENSRNOG00000031173	Snd1	70	87.990	ENSUAMG00000002820	-	86	88.378	Ursus_americanus
ENSRNOG00000031173	Snd1	93	96.388	ENSUAMG00000005604	-	93	97.529	Ursus_americanus
ENSRNOG00000031173	Snd1	100	96.271	ENSUMAG00000005960	SND1	99	97.247	Ursus_maritimus
ENSRNOG00000031173	Snd1	79	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSRNOG00000031173	Snd1	99	97.137	ENSVVUG00000007226	SND1	99	97.137	Vulpes_vulpes
ENSRNOG00000031173	Snd1	99	83.616	ENSXETG00000023043	snd1	100	84.873	Xenopus_tropicalis
ENSRNOG00000031173	Snd1	95	79.929	ENSXCOG00000013629	snd1	99	80.879	Xiphophorus_couchianus
ENSRNOG00000031173	Snd1	100	83.766	ENSXMAG00000011469	snd1	98	84.676	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003713	transcription coactivator activity	11124528.	TAS	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0004518	nuclease activity	21873635.	IBA	Function
GO:0004519	endonuclease activity	-	ISO	Function
GO:0004521	endoribonuclease activity	-	IEA	Function
GO:0004521	endoribonuclease activity	-	ISO	Function
GO:0005515	protein binding	24882364.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0010564	regulation of cell cycle process	-	IEA	Process
GO:0010564	regulation of cell cycle process	-	ISO	Process
GO:0010587	miRNA catabolic process	-	IEA	Process
GO:0010587	miRNA catabolic process	-	ISO	Process
GO:0016442	RISC complex	-	IEA	Component
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0042470	melanosome	-	IEA	Component
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process
GO:0097433	dense body	-	IEA	Component
GO:0097433	dense body	-	ISO	Component
GO:1903508	positive regulation of nucleic acid-templated transcription	-	IEA	Process
GO:1905172	RISC complex binding	-	IEA	Function
GO:1905172	RISC complex binding	-	ISO	Function