EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000031294 (Gene tree)
Gene ID
302773
Gene Symbol
RGD1563104
Alias
LOC302773
Full Name
similar to Vigilin (High density lipoprotein-binding protein)
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
3753 bases
Position
chrX:96528836-96532588
Accession
1563104
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000054125KH_1PF00013.292.6e-104111
ENSRNOP00000054125KH_1PF00013.292.6e-104211
ENSRNOP00000054125KH_1PF00013.292.6e-104311
ENSRNOP00000054125KH_1PF00013.292.6e-104411
ENSRNOP00000054125KH_1PF00013.292.6e-104511
ENSRNOP00000054125KH_1PF00013.292.6e-104611
ENSRNOP00000054125KH_1PF00013.292.6e-104711
ENSRNOP00000054125KH_1PF00013.292.6e-104811
ENSRNOP00000054125KH_1PF00013.292.6e-104911
ENSRNOP00000054125KH_1PF00013.292.6e-1041011
ENSRNOP00000054125KH_1PF00013.292.6e-1041111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000043728-3753-ENSRNOP000000541251250 (aa)-D4A4T3
Gene Model
Click here to download ENSRNOG00000031294's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000031294's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000031294RGD15631047257.953ENSRNOG00000042823RGD15612309457.953
ENSRNOG00000031294RGD15631049746.819ENSRNOG00000031479Hdlbp9646.819
ENSRNOG00000031294RGD15631047259.862ENSRNOG00000028847AABR07040251.19959.862
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000031294RGD15631049752.035ENSG00000115677HDLBP9954.331Homo_sapiens
ENSRNOG00000031294RGD15631049744.858ENSAPOG00000012609hdlbpa9644.939Acanthochromis_polyacanthus
ENSRNOG00000031294RGD15631049747.188ENSAMEG00000016552HDLBP9647.064Ailuropoda_melanoleuca
ENSRNOG00000031294RGD15631049644.507ENSACIG00000006015hdlbpa9544.507Amphilophus_citrinellus
ENSRNOG00000031294RGD15631049744.660ENSAOCG00000000300hdlbpa9644.741Amphiprion_ocellaris
ENSRNOG00000031294RGD15631049744.660ENSAPEG00000000522hdlbpa9945.340Amphiprion_percula
ENSRNOG00000031294RGD15631049744.408ENSATEG00000009748hdlbpa9644.408Anabas_testudineus
ENSRNOG00000031294RGD15631049747.416ENSACAG00000001556HDLBP9647.416Anolis_carolinensis
ENSRNOG00000031294RGD15631049751.758ENSANAG00000020545HDLBP9647.025Aotus_nancymaae
ENSRNOG00000031294RGD15631049644.791ENSACLG00000025965hdlbpa9544.873Astatotilapia_calliptera
ENSRNOG00000031294RGD15631049345.145ENSAMXG00000004221hdlbpa9945.145Astyanax_mexicanus
ENSRNOG00000031294RGD15631049747.765ENSBTAG00000004315HDLBP9647.765Bos_taurus
ENSRNOG00000031294RGD15631049751.868ENSCJAG00000006152HDLBP9647.030Callithrix_jacchus
ENSRNOG00000031294RGD15631049747.227ENSCAFG00000012913HDLBP9947.631Canis_familiaris
ENSRNOG00000031294RGD15631049747.227ENSCAFG00020025089HDLBP9647.227Canis_lupus_dingo
ENSRNOG00000031294RGD15631049746.210ENSCHIG00000022364HDLBP9646.210Capra_hircus
ENSRNOG00000031294RGD15631049447.775ENSTSYG00000002379HDLBP9447.775Carlito_syrichta
ENSRNOG00000031294RGD15631049446.109ENSCAPG00000008584HDLBP9546.109Cavia_aperea
ENSRNOG00000031294RGD15631049751.542ENSCPOG00000006297HDLBP9651.705Cavia_porcellus
ENSRNOG00000031294RGD15631047543.630ENSCCAG00000037920-9943.023Cebus_capucinus
ENSRNOG00000031294RGD15631049751.978ENSCCAG00000023361-9351.978Cebus_capucinus
ENSRNOG00000031294RGD15631049747.227ENSCATG00000039363HDLBP9647.227Cercocebus_atys
ENSRNOG00000031294RGD15631049751.778ENSCLAG00000002365HDLBP9651.942Chinchilla_lanigera
ENSRNOG00000031294RGD15631049747.227ENSCSAG00000005781HDLBP9547.227Chlorocebus_sabaeus
ENSRNOG00000031294RGD15631049139.173ENSCHOG00000003882-9839.064Choloepus_hoffmanni
ENSRNOG00000031294RGD15631049746.185ENSCPBG00000002442HDLBP9646.185Chrysemys_picta_bellii
ENSRNOG00000031294RGD15631049751.319ENSCANG00000033571HDLBP9647.064Colobus_angolensis_palliatus
ENSRNOG00000031294RGD15631049751.155ENSCGRG00001006086Hdlbp9646.656Cricetulus_griseus_chok1gshd
ENSRNOG00000031294RGD15631047262.260ENSCGRG000010105704921511C20Rik9962.260Cricetulus_griseus_chok1gshd
ENSRNOG00000031294RGD15631049746.656ENSCGRG00000014444Hdlbp9646.656Cricetulus_griseus_crigri
ENSRNOG00000031294RGD156310410076.640ENSCGRG00000015720Gm38210076.640Cricetulus_griseus_crigri
ENSRNOG00000031294RGD15631049744.634ENSCSEG00000008853hdlbpa9744.634Cynoglossus_semilaevis
ENSRNOG00000031294RGD15631049844.194ENSCVAG00000017892hdlbpa9744.194Cyprinodon_variegatus
ENSRNOG00000031294RGD15631049544.825ENSDARG00000009830hdlbpa9444.426Danio_rerio
ENSRNOG00000031294RGD15631049746.355ENSDNOG00000006753HDLBP9646.355Dasypus_novemcinctus
ENSRNOG00000031294RGD15631049754.878ENSETEG00000005416-7754.878Echinops_telfairi
ENSRNOG00000031294RGD15631049747.145ENSEASG00005008249HDLBP9647.145Equus_asinus_asinus
ENSRNOG00000031294RGD15631049955.298ENSECAG00000028723-9955.298Equus_caballus
ENSRNOG00000031294RGD15631049949.329ENSECAG00000030885-9949.329Equus_caballus
ENSRNOG00000031294RGD15631049747.145ENSECAG00000012829HDLBP9647.145Equus_caballus
ENSRNOG00000031294RGD15631048848.649ENSEEUG00000014648HDLBP9548.649Erinaceus_europaeus
ENSRNOG00000031294RGD15631049747.403ENSELUG00000010700hdlbpa9647.403Esox_lucius
ENSRNOG00000031294RGD15631049747.064ENSFCAG00000010455HDLBP9647.064Felis_catus
ENSRNOG00000031294RGD15631049747.514ENSFALG00000003437HDLBP9747.677Ficedula_albicollis
ENSRNOG00000031294RGD15631049452.053ENSFDAG00000000456HDLBP9351.889Fukomys_damarensis
ENSRNOG00000031294RGD15631049744.327ENSFHEG00000004848hdlbpa9743.926Fundulus_heteroclitus
ENSRNOG00000031294RGD15631049743.521ENSGMOG00000009932hdlbpa9643.521Gadus_morhua
ENSRNOG00000031294RGD15631049647.848ENSGALG00000005823HDLBP9548.013Gallus_gallus
ENSRNOG00000031294RGD15631049837.427ENSGAFG00000016766hdlbpa9737.427Gambusia_affinis
ENSRNOG00000031294RGD15631049744.199ENSGACG00000004648hdlbpa9644.199Gasterosteus_aculeatus
ENSRNOG00000031294RGD15631049747.990ENSGAGG00000004256HDLBP9647.990Gopherus_agassizii
ENSRNOG00000031294RGD15631049752.035ENSGGOG00000004392HDLBP9352.035Gorilla_gorilla
ENSRNOG00000031294RGD15631049644.627ENSHBUG00000001136hdlbpa9544.709Haplochromis_burtoni
ENSRNOG00000031294RGD15631049451.720ENSHGLG00000004910HDLBP9051.556Heterocephalus_glaber_female
ENSRNOG00000031294RGD15631049451.720ENSHGLG00100013326HDLBP9051.556Heterocephalus_glaber_male
ENSRNOG00000031294RGD15631049644.828ENSHCOG00000014837hdlbpa9544.828Hippocampus_comes
ENSRNOG00000031294RGD15631049644.545ENSIPUG00000013088hdlbp9444.545Ictalurus_punctatus
ENSRNOG00000031294RGD15631045946.531ENSIPUG00000013177-8546.531Ictalurus_punctatus
ENSRNOG00000031294RGD15631049646.805ENSSTOG00000013331HDLBP9546.805Ictidomys_tridecemlineatus
ENSRNOG00000031294RGD15631049951.532ENSJJAG00000013712-9951.532Jaculus_jaculus
ENSRNOG00000031294RGD15631049751.485ENSJJAG00000003596Hdlbp9651.485Jaculus_jaculus
ENSRNOG00000031294RGD15631049744.118ENSKMAG00000007571hdlbpa9644.118Kryptolebias_marmoratus
ENSRNOG00000031294RGD15631049744.625ENSLBEG00000027461hdlbpa9544.707Labrus_bergylta
ENSRNOG00000031294RGD15631049645.844ENSLACG00000003592HDLBP9645.844Latimeria_chalumnae
ENSRNOG00000031294RGD15631049843.700ENSLOCG00000006278hdlbpa9743.700Lepisosteus_oculatus
ENSRNOG00000031294RGD15631049747.025ENSLAFG00000014826HDLBP9647.025Loxodonta_africana
ENSRNOG00000031294RGD15631049750.980ENSMFAG00000033641HDLBP9650.980Macaca_fascicularis
ENSRNOG00000031294RGD15631049752.035ENSMMUG00000004730HDLBP9452.035Macaca_mulatta
ENSRNOG00000031294RGD15631049747.227ENSMNEG00000024260HDLBP9647.227Macaca_nemestrina
ENSRNOG00000031294RGD15631049747.227ENSMLEG00000042734HDLBP9647.227Mandrillus_leucophaeus
ENSRNOG00000031294RGD15631049644.839ENSMAMG00000008611hdlbpa9644.444Mastacembelus_armatus
ENSRNOG00000031294RGD15631049644.791ENSMZEG00005009513hdlbpa9544.873Maylandia_zebra
ENSRNOG00000031294RGD15631049646.026ENSMGAG00000003686HDLBP9947.957Meleagris_gallopavo
ENSRNOG00000031294RGD15631049751.485ENSMAUG00000017743Hdlbp9651.485Mesocricetus_auratus
ENSRNOG00000031294RGD15631049751.155ENSMICG00000004569HDLBP9351.155Microcebus_murinus
ENSRNOG00000031294RGD15631049751.265ENSMOCG00000006679Hdlbp9646.737Microtus_ochrogaster
ENSRNOG00000031294RGD15631049441.674ENSMMOG00000006880hdlbpa9541.674Mola_mola
ENSRNOG00000031294RGD15631049447.615ENSMODG00000016033HDLBP9447.615Monodelphis_domestica
ENSRNOG00000031294RGD15631049445.941ENSMALG00000015095hdlbpa9446.025Monopterus_albus
ENSRNOG00000031294RGD156310410085.760MGP_CAROLIEiJ_G0033373Gm38210085.760Mus_caroli
ENSRNOG00000031294RGD15631047261.834MGP_CAROLIEiJ_G00333744921511C20Rik9961.834Mus_caroli
ENSRNOG00000031294RGD15631049751.485MGP_CAROLIEiJ_G0014456Hdlbp9651.485Mus_caroli
ENSRNOG00000031294RGD15631047262.047ENSMUSG000000498154921511C20Rik9962.047Mus_musculus
ENSRNOG00000031294RGD15631049751.831ENSMUSG00000034088Hdlbp9651.831Mus_musculus
ENSRNOG00000031294RGD156310410086.000ENSMUSG00000062791Gm38210086.000Mus_musculus
ENSRNOG00000031294RGD156310410086.640MGP_PahariEiJ_G0031913Gm38210086.640Mus_pahari
ENSRNOG00000031294RGD15631047263.539MGP_PahariEiJ_G00319144921511C20Rik9963.539Mus_pahari
ENSRNOG00000031294RGD15631049751.485MGP_PahariEiJ_G0027692Hdlbp9651.485Mus_pahari
ENSRNOG00000031294RGD15631049751.485MGP_SPRETEiJ_G0015260Hdlbp9651.485Mus_spretus
ENSRNOG00000031294RGD156310410086.000MGP_SPRETEiJ_G0034538Gm38210086.000Mus_spretus
ENSRNOG00000031294RGD15631047262.047MGP_SPRETEiJ_G00345394921511C20Rik9962.047Mus_spretus
ENSRNOG00000031294RGD15631049746.781ENSMPUG00000000163HDLBP9646.656Mustela_putorius_furo
ENSRNOG00000031294RGD15631049746.776ENSMLUG00000005628HDLBP9646.776Myotis_lucifugus
ENSRNOG00000031294RGD15631049751.758ENSNGAG00000014873Hdlbp9651.595Nannospalax_galili
ENSRNOG00000031294RGD15631049644.627ENSNBRG00000000051hdlbpa9744.709Neolamprologus_brichardi
ENSRNOG00000031294RGD15631049747.064ENSNLEG00000013818HDLBP9647.064Nomascus_leucogenys
ENSRNOG00000031294RGD15631049142.273ENSNLEG00000031018-9242.273Nomascus_leucogenys
ENSRNOG00000031294RGD15631049453.242ENSMEUG00000008427HDLBP8253.242Notamacropus_eugenii
ENSRNOG00000031294RGD15631049447.133ENSOPRG00000011965-9347.133Ochotona_princeps
ENSRNOG00000031294RGD15631049751.542ENSODEG00000012313-9646.776Octodon_degus
ENSRNOG00000031294RGD15631049445.798ENSODEG00000017391-9445.882Octodon_degus
ENSRNOG00000031294RGD15631049744.490ENSONIG00000019272hdlbpa9644.571Oreochromis_niloticus
ENSRNOG00000031294RGD15631049747.740ENSOANG00000011759-9647.740Ornithorhynchus_anatinus
ENSRNOG00000031294RGD15631049746.330ENSOCUG00000012667HDLBP9646.330Oryctolagus_cuniculus
ENSRNOG00000031294RGD15631049743.902ENSORLG00000002226hdlbpa9643.902Oryzias_latipes
ENSRNOG00000031294RGD15631049743.984ENSORLG00020007905hdlbpa9643.984Oryzias_latipes_hni
ENSRNOG00000031294RGD15631049744.075ENSORLG00015004126hdlbpa9643.984Oryzias_latipes_hsok
ENSRNOG00000031294RGD15631049443.333ENSOMEG00000000247hdlbpa9343.333Oryzias_melastigma
ENSRNOG00000031294RGD15631049746.798ENSOGAG00000000738HDLBP9646.798Otolemur_garnettii
ENSRNOG00000031294RGD15631049745.012ENSOARG00000017870HDLBP9645.012Ovis_aries
ENSRNOG00000031294RGD15631049751.925ENSPPAG00000023318HDLBP9351.925Pan_paniscus
ENSRNOG00000031294RGD15631049747.064ENSPPRG00000010215HDLBP9647.064Panthera_pardus
ENSRNOG00000031294RGD15631049742.826ENSPTIG00000009328HDLBP9642.826Panthera_tigris_altaica
ENSRNOG00000031294RGD15631049752.198ENSPTRG00000013121HDLBP9352.198Pan_troglodytes
ENSRNOG00000031294RGD15631049747.291ENSPANG00000011832HDLBP9647.291Papio_anubis
ENSRNOG00000031294RGD15631049943.241ENSPKIG00000002392hdlbpa9943.320Paramormyrops_kingsleyae
ENSRNOG00000031294RGD15631049147.803ENSPSIG00000010068HDLBP9647.803Pelodiscus_sinensis
ENSRNOG00000031294RGD15631049749.558ENSPMGG00000002102hdlbpa9649.558Periophthalmus_magnuspinnatus
ENSRNOG00000031294RGD15631049751.595ENSPEMG00000017704Hdlbp9646.982Peromyscus_maniculatus_bairdii
ENSRNOG00000031294RGD15631049348.092ENSPCIG00000015375HDLBP8848.092Phascolarctos_cinereus
ENSRNOG00000031294RGD15631049744.408ENSPFOG00000000236hdlbpa9644.408Poecilia_formosa
ENSRNOG00000031294RGD15631049145.588ENSPLAG00000006033hdlbpa9645.675Poecilia_latipinna
ENSRNOG00000031294RGD15631049744.163ENSPMEG00000006627hdlbpa9743.765Poecilia_mexicana
ENSRNOG00000031294RGD15631049834.698ENSPREG00000014450hdlbpa9833.656Poecilia_reticulata
ENSRNOG00000031294RGD15631049747.291ENSPPYG00000013351HDLBP9647.291Pongo_abelii
ENSRNOG00000031294RGD15631049752.778ENSPCAG00000011136HDLBP7452.778Procavia_capensis
ENSRNOG00000031294RGD15631049751.441ENSPCOG00000021622HDLBP7551.441Propithecus_coquereli
ENSRNOG00000031294RGD15631049746.179ENSPVAG00000000555HDLBP9646.305Pteropus_vampyrus
ENSRNOG00000031294RGD15631049644.709ENSPNYG00000020753hdlbpa9544.791Pundamilia_nyererei
ENSRNOG00000031294RGD15631049644.992ENSPNAG00000029610hdlbpa9644.992Pygocentrus_nattereri
ENSRNOG00000031294RGD15631049751.316ENSRBIG00000041381HDLBP9451.316Rhinopithecus_bieti
ENSRNOG00000031294RGD15631049751.316ENSRROG00000034263HDLBP9451.316Rhinopithecus_roxellana
ENSRNOG00000031294RGD15631049747.188ENSSBOG00000029714-9347.188Saimiri_boliviensis_boliviensis
ENSRNOG00000031294RGD15631049143.069ENSSBOG00000033067-9543.243Saimiri_boliviensis_boliviensis
ENSRNOG00000031294RGD15631049448.531ENSSHAG00000012422HDLBP9448.531Sarcophilus_harrisii
ENSRNOG00000031294RGD15631049445.067ENSSFOG00015018627hdlbp9445.151Scleropages_formosus
ENSRNOG00000031294RGD15631049745.551ENSSMAG00000002382hdlbpa9545.551Scophthalmus_maximus
ENSRNOG00000031294RGD15631049744.669ENSSDUG00000022258hdlbpa9644.669Seriola_dumerili
ENSRNOG00000031294RGD15631049744.588ENSSLDG00000004437hdlbpa9644.588Seriola_lalandi_dorsalis
ENSRNOG00000031294RGD15631048943.420ENSSARG00000012639HDLBP8843.420Sorex_araneus
ENSRNOG00000031294RGD15631049747.840ENSSPUG00000009182HDLBP9647.840Sphenodon_punctatus
ENSRNOG00000031294RGD15631049744.660ENSSPAG00000009145hdlbpa9644.741Stegastes_partitus
ENSRNOG00000031294RGD15631049746.536ENSSSCG00000016379HDLBP9946.701Sus_scrofa
ENSRNOG00000031294RGD15631049247.481ENSTGUG00000006189HDLBP9648.047Taeniopygia_guttata
ENSRNOG00000031294RGD15631049744.228ENSTRUG00000012148hdlbpa9644.146Takifugu_rubripes
ENSRNOG00000031294RGD15631049643.852ENSTNIG00000004185hdlbpa9743.770Tetraodon_nigroviridis
ENSRNOG00000031294RGD15631048957.609ENSTBEG00000001860HDLBP8857.609Tupaia_belangeri
ENSRNOG00000031294RGD15631049749.109ENSTTRG00000015251HDLBP7349.109Tursiops_truncatus
ENSRNOG00000031294RGD15631049747.064ENSUAMG00000018383HDLBP9647.064Ursus_americanus
ENSRNOG00000031294RGD15631049747.064ENSUMAG00000010539HDLBP9647.064Ursus_maritimus
ENSRNOG00000031294RGD15631048655.211ENSVPAG00000003112HDLBP9355.211Vicugna_pacos
ENSRNOG00000031294RGD15631049148.354ENSVVUG00000022797HDLBP9647.756Vulpes_vulpes
ENSRNOG00000031294RGD15631049445.386ENSXETG00000012164hdlbp9345.302Xenopus_tropicalis
ENSRNOG00000031294RGD15631049743.990ENSXCOG00000005943hdlbpa9643.990Xiphophorus_couchianus
ENSRNOG00000031294RGD15631049744.000ENSXMAG00000003787hdlbpa9544.082Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction

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