EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000032258 (Gene tree)
Gene ID: 289088
Gene Symbol: Swt1
Alias: LOC289088|RGD1308695
Full Name: SWT1 RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 57506 bases
Position: chr13:68728266-68785771
Accession: 1308695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000072271	PIN_4	PF13638.6	1.1e-27	1	1
ENSRNOP00000049813	PIN_4	PF13638.6	1.2e-27	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000044255	-	3679	XM_008769613	ENSRNOP00000049813	910 (aa)	-	D3ZHR0
ENSRNOT00000086460	-	3013	-	ENSRNOP00000072271	878 (aa)	-	A0A0G2K2J8

Gene Model

Click here to download ENSRNOG00000032258's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000032258's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000032258	Swt1	98	72.577	ENSG00000116668	SWT1	99	72.167	Homo_sapiens
ENSRNOG00000032258	Swt1	62	35.345	ENSAPOG00000014897	-	58	35.628	Acanthochromis_polyacanthus
ENSRNOG00000032258	Swt1	98	70.199	ENSAMEG00000013585	SWT1	100	70.232	Ailuropoda_melanoleuca
ENSRNOG00000032258	Swt1	62	34.991	ENSAOCG00000013932	swt1	58	34.991	Amphiprion_ocellaris
ENSRNOG00000032258	Swt1	62	34.820	ENSAPEG00000009613	-	58	34.820	Amphiprion_percula
ENSRNOG00000032258	Swt1	72	34.957	ENSATEG00000018946	swt1	66	34.527	Anabas_testudineus
ENSRNOG00000032258	Swt1	73	49.559	ENSAPLG00000008607	SWT1	83	52.683	Anas_platyrhynchos
ENSRNOG00000032258	Swt1	66	46.496	ENSACAG00000002276	SWT1	67	46.496	Anolis_carolinensis
ENSRNOG00000032258	Swt1	98	72.607	ENSANAG00000027068	SWT1	99	71.617	Aotus_nancymaae
ENSRNOG00000032258	Swt1	76	31.073	ENSACLG00000009742	swt1	73	32.623	Astatotilapia_calliptera
ENSRNOG00000032258	Swt1	65	38.870	ENSAMXG00000010971	swt1	59	38.870	Astyanax_mexicanus
ENSRNOG00000032258	Swt1	68	65.047	ENSBTAG00000004492	SWT1	99	64.811	Bos_taurus
ENSRNOG00000032258	Swt1	98	70.627	ENSCJAG00000005544	SWT1	100	70.110	Callithrix_jacchus
ENSRNOG00000032258	Swt1	99	70.174	ENSCAFG00000013543	SWT1	99	69.827	Canis_familiaris
ENSRNOG00000032258	Swt1	98	70.131	ENSCAFG00020015648	SWT1	99	70.775	Canis_lupus_dingo
ENSRNOG00000032258	Swt1	89	74.328	ENSCHIG00000023511	SWT1	100	82.403	Capra_hircus
ENSRNOG00000032258	Swt1	98	73.047	ENSTSYG00000010470	SWT1	100	72.167	Carlito_syrichta
ENSRNOG00000032258	Swt1	91	71.053	ENSCPOG00000014251	SWT1	100	70.215	Cavia_porcellus
ENSRNOG00000032258	Swt1	98	72.937	ENSCCAG00000033926	SWT1	99	71.947	Cebus_capucinus
ENSRNOG00000032258	Swt1	98	72.797	ENSCATG00000042210	SWT1	99	84.157	Cercocebus_atys
ENSRNOG00000032258	Swt1	97	71.798	ENSCLAG00000013959	SWT1	99	71.236	Chinchilla_lanigera
ENSRNOG00000032258	Swt1	98	72.797	ENSCSAG00000012895	SWT1	99	72.497	Chlorocebus_sabaeus
ENSRNOG00000032258	Swt1	52	84.663	ENSCHOG00000002211	-	55	84.663	Choloepus_hoffmanni
ENSRNOG00000032258	Swt1	74	52.080	ENSCPBG00000015691	SWT1	76	52.080	Chrysemys_picta_bellii
ENSRNOG00000032258	Swt1	98	71.806	ENSCANG00000032207	SWT1	99	82.624	Colobus_angolensis_palliatus
ENSRNOG00000032258	Swt1	100	83.787	ENSCGRG00001022955	Swt1	100	84.296	Cricetulus_griseus_chok1gshd
ENSRNOG00000032258	Swt1	100	83.787	ENSCGRG00000010224	Swt1	100	83.408	Cricetulus_griseus_crigri
ENSRNOG00000032258	Swt1	69	34.375	ENSCSEG00000017352	swt1	85	34.074	Cynoglossus_semilaevis
ENSRNOG00000032258	Swt1	73	36.483	ENSDARG00000094010	swt1	69	36.628	Danio_rerio
ENSRNOG00000032258	Swt1	88	66.304	ENSDNOG00000005254	SWT1	100	66.304	Dasypus_novemcinctus
ENSRNOG00000032258	Swt1	98	71.763	ENSDORG00000010531	Swt1	100	71.094	Dipodomys_ordii
ENSRNOG00000032258	Swt1	89	69.988	ENSEASG00005005530	SWT1	100	68.155	Equus_asinus_asinus
ENSRNOG00000032258	Swt1	90	71.326	ENSECAG00000012085	SWT1	99	70.370	Equus_caballus
ENSRNOG00000032258	Swt1	83	83.908	ENSEEUG00000003664	SWT1	88	83.908	Erinaceus_europaeus
ENSRNOG00000032258	Swt1	64	37.584	ENSELUG00000020565	swt1	57	37.879	Esox_lucius
ENSRNOG00000032258	Swt1	98	71.476	ENSFCAG00000011286	SWT1	100	70.374	Felis_catus
ENSRNOG00000032258	Swt1	64	54.196	ENSFALG00000003206	SWT1	63	54.196	Ficedula_albicollis
ENSRNOG00000032258	Swt1	98	72.031	ENSFDAG00000007569	SWT1	100	71.365	Fukomys_damarensis
ENSRNOG00000032258	Swt1	64	53.333	ENSGALG00000034230	SWT1	65	53.333	Gallus_gallus
ENSRNOG00000032258	Swt1	72	32.051	ENSGAFG00000007803	-	68	32.328	Gambusia_affinis
ENSRNOG00000032258	Swt1	74	52.269	ENSGAGG00000025050	SWT1	99	56.947	Gopherus_agassizii
ENSRNOG00000032258	Swt1	59	83.846	ENSGGOG00000041167	-	95	83.846	Gorilla_gorilla
ENSRNOG00000032258	Swt1	79	31.181	ENSHBUG00000006188	swt1	73	32.698	Haplochromis_burtoni
ENSRNOG00000032258	Swt1	97	71.171	ENSHGLG00000006542	SWT1	99	70.641	Heterocephalus_glaber_female
ENSRNOG00000032258	Swt1	97	72.297	ENSHGLG00100014408	SWT1	99	71.766	Heterocephalus_glaber_male
ENSRNOG00000032258	Swt1	73	34.061	ENSIPUG00000009113	-	69	34.840	Ictalurus_punctatus
ENSRNOG00000032258	Swt1	98	73.333	ENSSTOG00000010356	SWT1	100	72.889	Ictidomys_tridecemlineatus
ENSRNOG00000032258	Swt1	98	71.620	ENSJJAG00000015927	Swt1	100	70.503	Jaculus_jaculus
ENSRNOG00000032258	Swt1	63	35.859	ENSKMAG00000012533	swt1	59	35.859	Kryptolebias_marmoratus
ENSRNOG00000032258	Swt1	62	36.049	ENSLBEG00000020663	-	57	36.049	Labrus_bergylta
ENSRNOG00000032258	Swt1	75	44.650	ENSLACG00000009194	SWT1	99	44.793	Latimeria_chalumnae
ENSRNOG00000032258	Swt1	65	40.325	ENSLOCG00000001749	swt1	97	42.193	Lepisosteus_oculatus
ENSRNOG00000032258	Swt1	67	83.844	ENSLAFG00000004346	-	100	83.844	Loxodonta_africana
ENSRNOG00000032258	Swt1	98	72.357	ENSMFAG00000031793	SWT1	99	83.590	Macaca_fascicularis
ENSRNOG00000032258	Swt1	98	69.641	ENSMMUG00000013882	SWT1	99	79.487	Macaca_mulatta
ENSRNOG00000032258	Swt1	98	72.577	ENSMNEG00000035502	SWT1	99	83.761	Macaca_nemestrina
ENSRNOG00000032258	Swt1	98	72.577	ENSMLEG00000038692	SWT1	99	83.986	Mandrillus_leucophaeus
ENSRNOG00000032258	Swt1	79	31.181	ENSMZEG00005018489	swt1	73	32.698	Maylandia_zebra
ENSRNOG00000032258	Swt1	66	52.167	ENSMGAG00000000973	SWT1	100	52.167	Meleagris_gallopavo
ENSRNOG00000032258	Swt1	100	75.843	ENSMAUG00000007996	Swt1	100	75.082	Mesocricetus_auratus
ENSRNOG00000032258	Swt1	98	74.037	ENSMICG00000014975	SWT1	100	73.047	Microcebus_murinus
ENSRNOG00000032258	Swt1	100	83.790	ENSMOCG00000009776	Swt1	100	83.790	Microtus_ochrogaster
ENSRNOG00000032258	Swt1	97	57.946	ENSMODG00000007472	SWT1	99	56.973	Monodelphis_domestica
ENSRNOG00000032258	Swt1	63	36.833	ENSMALG00000019308	swt1	58	36.833	Monopterus_albus
ENSRNOG00000032258	Swt1	99	87.802	MGP_CAROLIEiJ_G0014692	Swt1	100	90.556	Mus_caroli
ENSRNOG00000032258	Swt1	99	87.143	ENSMUSG00000052748	Swt1	99	90.411	Mus_musculus
ENSRNOG00000032258	Swt1	100	89.023	MGP_PahariEiJ_G0027928	Swt1	100	91.667	Mus_pahari
ENSRNOG00000032258	Swt1	99	87.473	MGP_SPRETEiJ_G0015499	Swt1	100	89.041	Mus_spretus
ENSRNOG00000032258	Swt1	98	70.861	ENSMPUG00000011913	SWT1	100	69.978	Mustela_putorius_furo
ENSRNOG00000032258	Swt1	99	70.099	ENSMLUG00000001142	SWT1	100	68.438	Myotis_lucifugus
ENSRNOG00000032258	Swt1	100	80.000	ENSNGAG00000021080	Swt1	100	79.212	Nannospalax_galili
ENSRNOG00000032258	Swt1	98	71.854	ENSNLEG00000018031	SWT1	99	71.775	Nomascus_leucogenys
ENSRNOG00000032258	Swt1	98	44.994	ENSMEUG00000000236	-	99	44.444	Notamacropus_eugenii
ENSRNOG00000032258	Swt1	86	67.536	ENSOPRG00000000692	SWT1	88	67.536	Ochotona_princeps
ENSRNOG00000032258	Swt1	62	35.676	ENSONIG00000009994	swt1	100	36.182	Oreochromis_niloticus
ENSRNOG00000032258	Swt1	83	57.436	ENSOANG00000001013	-	97	57.455	Ornithorhynchus_anatinus
ENSRNOG00000032258	Swt1	97	64.607	ENSOCUG00000004901	SWT1	99	64.607	Oryctolagus_cuniculus
ENSRNOG00000032258	Swt1	73	32.900	ENSORLG00000009682	swt1	68	32.900	Oryzias_latipes
ENSRNOG00000032258	Swt1	62	35.103	ENSORLG00020011654	swt1	59	34.932	Oryzias_latipes_hni
ENSRNOG00000032258	Swt1	73	33.189	ENSORLG00015007734	swt1	68	33.189	Oryzias_latipes_hsok
ENSRNOG00000032258	Swt1	72	33.913	ENSOMEG00000006607	swt1	66	34.835	Oryzias_melastigma
ENSRNOG00000032258	Swt1	98	72.607	ENSOGAG00000016195	SWT1	100	71.727	Otolemur_garnettii
ENSRNOG00000032258	Swt1	99	70.607	ENSOARG00000004156	SWT1	99	69.740	Ovis_aries
ENSRNOG00000032258	Swt1	98	72.577	ENSPPAG00000021400	SWT1	99	72.057	Pan_paniscus
ENSRNOG00000032258	Swt1	98	71.444	ENSPPRG00000023754	SWT1	100	70.925	Panthera_pardus
ENSRNOG00000032258	Swt1	98	71.334	ENSPTIG00000021889	SWT1	100	70.815	Panthera_tigris_altaica
ENSRNOG00000032258	Swt1	98	72.577	ENSPTRG00000001777	SWT1	99	72.057	Pan_troglodytes
ENSRNOG00000032258	Swt1	98	72.216	ENSPANG00000005099	SWT1	99	83.305	Papio_anubis
ENSRNOG00000032258	Swt1	64	36.724	ENSPKIG00000005979	swt1	59	36.770	Paramormyrops_kingsleyae
ENSRNOG00000032258	Swt1	74	51.351	ENSPSIG00000008961	SWT1	75	51.351	Pelodiscus_sinensis
ENSRNOG00000032258	Swt1	50	35.853	ENSPMGG00000000152	-	62	37.387	Periophthalmus_magnuspinnatus
ENSRNOG00000032258	Swt1	100	85.214	ENSPEMG00000008208	Swt1	100	84.447	Peromyscus_maniculatus_bairdii
ENSRNOG00000032258	Swt1	98	57.537	ENSPCIG00000002443	SWT1	99	73.282	Phascolarctos_cinereus
ENSRNOG00000032258	Swt1	72	32.051	ENSPFOG00000010988	-	69	33.167	Poecilia_formosa
ENSRNOG00000032258	Swt1	72	32.051	ENSPLAG00000022908	-	60	33.609	Poecilia_latipinna
ENSRNOG00000032258	Swt1	72	32.092	ENSPMEG00000006943	-	68	32.258	Poecilia_mexicana
ENSRNOG00000032258	Swt1	98	71.806	ENSPPYG00000000415	SWT1	99	71.397	Pongo_abelii
ENSRNOG00000032258	Swt1	91	72.868	ENSPCAG00000008337	SWT1	93	72.868	Procavia_capensis
ENSRNOG00000032258	Swt1	67	82.418	ENSPCOG00000018195	-	93	82.418	Propithecus_coquereli
ENSRNOG00000032258	Swt1	78	72.331	ENSPVAG00000005968	SWT1	79	72.433	Pteropus_vampyrus
ENSRNOG00000032258	Swt1	68	33.016	ENSPNYG00000012934	swt1	73	32.698	Pundamilia_nyererei
ENSRNOG00000032258	Swt1	74	35.915	ENSPNAG00000017795	swt1	59	38.225	Pygocentrus_nattereri
ENSRNOG00000032258	Swt1	98	69.857	ENSRBIG00000040630	SWT1	99	79.898	Rhinopithecus_bieti
ENSRNOG00000032258	Swt1	66	68.943	ENSRROG00000028596	SWT1	100	66.823	Rhinopithecus_roxellana
ENSRNOG00000032258	Swt1	98	72.777	ENSSBOG00000028825	SWT1	99	71.789	Saimiri_boliviensis_boliviensis
ENSRNOG00000032258	Swt1	98	57.883	ENSSHAG00000009241	SWT1	99	57.051	Sarcophilus_harrisii
ENSRNOG00000032258	Swt1	64	40.381	ENSSFOG00015004895	swt1	57	40.208	Scleropages_formosus
ENSRNOG00000032258	Swt1	62	35.274	ENSSDUG00000012345	swt1	58	35.385	Seriola_dumerili
ENSRNOG00000032258	Swt1	62	34.655	ENSSLDG00000003821	swt1	58	34.768	Seriola_lalandi_dorsalis
ENSRNOG00000032258	Swt1	59	50.962	ENSSARG00000011524	-	99	50.962	Sorex_araneus
ENSRNOG00000032258	Swt1	73	50.651	ENSSPUG00000003899	SWT1	75	50.651	Sphenodon_punctatus
ENSRNOG00000032258	Swt1	62	34.701	ENSSPAG00000001030	swt1	58	34.701	Stegastes_partitus
ENSRNOG00000032258	Swt1	92	74.503	ENSSSCG00000015569	SWT1	100	72.044	Sus_scrofa
ENSRNOG00000032258	Swt1	63	54.367	ENSTGUG00000003718	-	100	54.367	Taeniopygia_guttata
ENSRNOG00000032258	Swt1	71	34.763	ENSTRUG00000006420	swt1	70	34.763	Takifugu_rubripes
ENSRNOG00000032258	Swt1	52	83.871	ENSTBEG00000016891	-	54	83.871	Tupaia_belangeri
ENSRNOG00000032258	Swt1	98	69.637	ENSTTRG00000005914	SWT1	100	68.647	Tursiops_truncatus
ENSRNOG00000032258	Swt1	98	69.724	ENSUAMG00000020937	SWT1	99	72.222	Ursus_americanus
ENSRNOG00000032258	Swt1	98	70.055	ENSUMAG00000021918	SWT1	100	70.055	Ursus_maritimus
ENSRNOG00000032258	Swt1	90	80.378	ENSVPAG00000011855	SWT1	92	80.378	Vicugna_pacos
ENSRNOG00000032258	Swt1	98	70.673	ENSVVUG00000009182	SWT1	100	70.452	Vulpes_vulpes
ENSRNOG00000032258	Swt1	71	32.895	ENSXMAG00000023472	-	69	32.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	21873635.	IBA	Process