EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000032300 (Gene tree)
Gene ID: 497860
Gene Symbol: Rpl39l
Alias: LOC497860|MGC125234
Full Name: ribosomal protein L39-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 4107 bases
Position: chr10:5529589-5533695
Accession: 1561345
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000040295	Ribosomal_L39	PF00832.20	2.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000051564	-	499	-	ENSRNOP00000040295	51 (aa)	-	Q3ZB89

Gene Model

Click here to download ENSRNOG00000032300's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000032300's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRNOG00000034237	LOC103694169	100	94.118
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRNOG00000048073	LOC103690821	100	94.118
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRNOG00000032835	LOC103693375	100	94.118
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRNOG00000043348	Rpl39	100	94.118
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRNOG00000038654	LOC103694404	100	94.118
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRNOG00000050393	LOC103690821	100	94.118
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRNOG00000029267	LOC103692785	100	94.118

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000032300	Rpl39l	100	96.078	ENSAMEG00000019848	-	100	96.078	Ailuropoda_melanoleuca
ENSRNOG00000032300	Rpl39l	100	88.235	ENSANAG00000016436	-	100	88.235	Aotus_nancymaae
ENSRNOG00000032300	Rpl39l	100	94.118	ENSANAG00000016046	-	100	94.118	Aotus_nancymaae
ENSRNOG00000032300	Rpl39l	100	96.078	ENSANAG00000031418	-	100	96.078	Aotus_nancymaae
ENSRNOG00000032300	Rpl39l	100	94.118	ENSCAFG00020026664	-	100	94.118	Canis_lupus_dingo
ENSRNOG00000032300	Rpl39l	100	92.157	ENSCAFG00020023883	-	100	92.157	Canis_lupus_dingo
ENSRNOG00000032300	Rpl39l	100	94.118	ENSCAFG00020009904	-	100	94.118	Canis_lupus_dingo
ENSRNOG00000032300	Rpl39l	100	88.235	ENSCAFG00020027515	-	100	88.235	Canis_lupus_dingo
ENSRNOG00000032300	Rpl39l	100	92.157	ENSCAFG00020002578	-	100	92.157	Canis_lupus_dingo
ENSRNOG00000032300	Rpl39l	90	89.130	ENSTSYG00000026787	-	82	89.130	Carlito_syrichta
ENSRNOG00000032300	Rpl39l	100	94.118	ENSTSYG00000026785	-	100	94.118	Carlito_syrichta
ENSRNOG00000032300	Rpl39l	100	96.078	ENSCAPG00000007210	-	100	96.078	Cavia_aperea
ENSRNOG00000032300	Rpl39l	100	96.078	ENSCPOG00000036636	-	100	96.078	Cavia_porcellus
ENSRNOG00000032300	Rpl39l	100	94.118	ENSCLAG00000017874	-	100	94.118	Chinchilla_lanigera
ENSRNOG00000032300	Rpl39l	100	90.196	ENSCLAG00000017707	-	100	90.196	Chinchilla_lanigera
ENSRNOG00000032300	Rpl39l	100	84.314	ENSCGRG00001008057	-	100	84.314	Cricetulus_griseus_chok1gshd
ENSRNOG00000032300	Rpl39l	100	98.039	ENSCGRG00001003230	Rpl39l	100	98.039	Cricetulus_griseus_chok1gshd
ENSRNOG00000032300	Rpl39l	100	92.157	ENSCGRG00001012052	-	100	92.157	Cricetulus_griseus_chok1gshd
ENSRNOG00000032300	Rpl39l	100	92.157	ENSCGRG00000019654	-	100	92.157	Cricetulus_griseus_crigri
ENSRNOG00000032300	Rpl39l	100	98.039	ENSCGRG00000018615	Rpl39l	100	98.039	Cricetulus_griseus_crigri
ENSRNOG00000032300	Rpl39l	100	94.118	ENSDORG00000028485	-	100	94.118	Dipodomys_ordii
ENSRNOG00000032300	Rpl39l	100	92.157	ENSDORG00000027732	-	100	92.157	Dipodomys_ordii
ENSRNOG00000032300	Rpl39l	100	80.392	ENSFCAG00000044333	RPL39L	100	80.392	Felis_catus
ENSRNOG00000032300	Rpl39l	100	71.154	ENSFCAG00000038709	-	91	71.154	Felis_catus
ENSRNOG00000032300	Rpl39l	100	96.078	ENSFDAG00000021400	-	100	96.078	Fukomys_damarensis
ENSRNOG00000032300	Rpl39l	92	91.489	ENSGGOG00000040312	-	65	91.489	Gorilla_gorilla
ENSRNOG00000032300	Rpl39l	100	88.235	ENSGGOG00000036596	-	100	88.235	Gorilla_gorilla
ENSRNOG00000032300	Rpl39l	100	92.157	ENSHGLG00000020604	-	100	92.157	Heterocephalus_glaber_female
ENSRNOG00000032300	Rpl39l	100	92.157	ENSHGLG00100011216	-	100	92.157	Heterocephalus_glaber_male
ENSRNOG00000032300	Rpl39l	100	96.078	ENSSTOG00000030492	-	100	96.078	Ictidomys_tridecemlineatus
ENSRNOG00000032300	Rpl39l	100	94.118	ENSSTOG00000028051	-	100	94.118	Ictidomys_tridecemlineatus
ENSRNOG00000032300	Rpl39l	100	88.235	ENSJJAG00000010041	-	100	88.235	Jaculus_jaculus
ENSRNOG00000032300	Rpl39l	100	92.157	ENSLAFG00000028648	-	100	92.157	Loxodonta_africana
ENSRNOG00000032300	Rpl39l	100	94.118	ENSMFAG00000020492	-	100	94.118	Macaca_fascicularis
ENSRNOG00000032300	Rpl39l	100	96.078	ENSMMUG00000044527	-	100	96.078	Macaca_mulatta
ENSRNOG00000032300	Rpl39l	100	92.157	ENSMMUG00000038479	-	100	92.157	Macaca_mulatta
ENSRNOG00000032300	Rpl39l	100	94.118	ENSMMUG00000045452	-	100	94.118	Macaca_mulatta
ENSRNOG00000032300	Rpl39l	100	88.235	ENSMNEG00000001683	-	68	88.235	Macaca_nemestrina
ENSRNOG00000032300	Rpl39l	100	94.118	ENSMNEG00000000126	-	100	94.118	Macaca_nemestrina
ENSRNOG00000032300	Rpl39l	98	94.000	ENSMLEG00000000739	-	100	94.000	Mandrillus_leucophaeus
ENSRNOG00000032300	Rpl39l	100	96.078	ENSMLEG00000003517	-	100	96.078	Mandrillus_leucophaeus
ENSRNOG00000032300	Rpl39l	100	90.196	ENSMLEG00000009433	-	100	90.196	Mandrillus_leucophaeus
ENSRNOG00000032300	Rpl39l	100	94.118	ENSMLEG00000018088	-	100	94.118	Mandrillus_leucophaeus
ENSRNOG00000032300	Rpl39l	100	90.196	ENSMAUG00000002516	-	100	90.196	Mesocricetus_auratus
ENSRNOG00000032300	Rpl39l	100	98.039	ENSMAUG00000015776	Rpl39l	100	98.039	Mesocricetus_auratus
ENSRNOG00000032300	Rpl39l	100	96.078	ENSMOCG00000001545	Rpl39l	100	96.078	Microtus_ochrogaster
ENSRNOG00000032300	Rpl39l	100	96.078	ENSMOCG00000002138	-	100	96.078	Microtus_ochrogaster
ENSRNOG00000032300	Rpl39l	100	100.000	MGP_CAROLIEiJ_G0020438	Rpl39l	100	100.000	Mus_caroli
ENSRNOG00000032300	Rpl39l	100	100.000	ENSMUSG00000039209	Rpl39l	100	100.000	Mus_musculus
ENSRNOG00000032300	Rpl39l	100	100.000	MGP_SPRETEiJ_G0021332	Rpl39l	100	100.000	Mus_spretus
ENSRNOG00000032300	Rpl39l	100	90.196	ENSMLUG00000015029	-	100	90.196	Myotis_lucifugus
ENSRNOG00000032300	Rpl39l	100	90.196	ENSMLUG00000025012	-	100	90.196	Myotis_lucifugus
ENSRNOG00000032300	Rpl39l	100	94.118	ENSNGAG00000012570	Rpl39l	100	94.118	Nannospalax_galili
ENSRNOG00000032300	Rpl39l	90	89.130	ENSNGAG00000022494	-	96	89.130	Nannospalax_galili
ENSRNOG00000032300	Rpl39l	100	86.275	ENSNGAG00000008665	-	100	86.275	Nannospalax_galili
ENSRNOG00000032300	Rpl39l	100	94.118	ENSODEG00000020114	-	100	94.118	Octodon_degus
ENSRNOG00000032300	Rpl39l	100	92.157	ENSOGAG00000024799	-	100	92.157	Otolemur_garnettii
ENSRNOG00000032300	Rpl39l	100	86.275	ENSPPRG00000020779	-	100	86.275	Panthera_pardus
ENSRNOG00000032300	Rpl39l	100	88.235	ENSPTIG00000006209	-	100	88.235	Panthera_tigris_altaica
ENSRNOG00000032300	Rpl39l	98	94.000	ENSPANG00000030226	-	100	94.000	Papio_anubis
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRBIG00000010842	-	100	94.118	Rhinopithecus_bieti
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRROG00000037724	-	100	94.118	Rhinopithecus_roxellana
ENSRNOG00000032300	Rpl39l	100	94.118	ENSRROG00000023025	-	100	94.118	Rhinopithecus_roxellana
ENSRNOG00000032300	Rpl39l	100	90.196	ENSSSCG00000038385	-	69	90.196	Sus_scrofa
ENSRNOG00000032300	Rpl39l	100	84.314	ENSSSCG00000033224	-	100	84.314	Sus_scrofa
ENSRNOG00000032300	Rpl39l	100	96.078	ENSUAMG00000020990	-	100	96.078	Ursus_americanus
ENSRNOG00000032300	Rpl39l	90	91.304	ENSUAMG00000000067	-	98	91.304	Ursus_americanus
ENSRNOG00000032300	Rpl39l	100	96.078	ENSUMAG00000015280	-	100	96.078	Ursus_maritimus
ENSRNOG00000032300	Rpl39l	100	86.275	ENSVVUG00000014095	-	100	86.275	Vulpes_vulpes
ENSRNOG00000032300	Rpl39l	98	92.000	ENSVVUG00000022951	-	100	92.000	Vulpes_vulpes
ENSRNOG00000032300	Rpl39l	100	96.078	ENSVVUG00000030147	-	100	96.078	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0006412	translation	-	IEA	Process
GO:0007283	spermatogenesis	-	ISO	Process
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component