EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000032441 (Gene tree)
Gene ID: 408200
Gene Symbol: Pan2
Alias: Usp52
Full Name: poly(A) specific ribonuclease subunit PAN2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 17458 bases
Position: chr7:2718700-2736157
Accession: 1303301
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000039314	RNase_T	PF00929.24	2.5e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000050792	-	3896	XM_006240783	ENSRNOP00000039314	1193 (aa)	XP_006240845	R9PXX6

Gene Model

Click here to download ENSRNOG00000032441's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000032441's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000032441	Pan2	100	75.164	ENSAPOG00000022955	pan2	99	75.638	Acanthochromis_polyacanthus
ENSRNOG00000032441	Pan2	100	95.507	ENSAMEG00000003824	PAN2	100	95.507	Ailuropoda_melanoleuca
ENSRNOG00000032441	Pan2	99	60.943	ENSACIG00000012858	PAN2	99	61.027	Amphilophus_citrinellus
ENSRNOG00000032441	Pan2	99	74.688	ENSACIG00000013079	pan2	99	75.021	Amphilophus_citrinellus
ENSRNOG00000032441	Pan2	100	75.248	ENSAOCG00000022334	pan2	99	75.495	Amphiprion_ocellaris
ENSRNOG00000032441	Pan2	100	75.309	ENSAPEG00000022760	pan2	99	75.556	Amphiprion_percula
ENSRNOG00000032441	Pan2	99	75.415	ENSATEG00000024030	pan2	100	75.810	Anabas_testudineus
ENSRNOG00000032441	Pan2	94	84.225	ENSAPLG00000005195	PAN2	100	84.492	Anas_platyrhynchos
ENSRNOG00000032441	Pan2	100	83.556	ENSACAG00000007067	PAN2	100	83.723	Anolis_carolinensis
ENSRNOG00000032441	Pan2	100	95.826	ENSANAG00000036468	PAN2	100	96.154	Aotus_nancymaae
ENSRNOG00000032441	Pan2	100	75.700	ENSACLG00000023674	pan2	99	75.783	Astatotilapia_calliptera
ENSRNOG00000032441	Pan2	98	60.119	ENSACLG00000023821	pan2	99	60.119	Astatotilapia_calliptera
ENSRNOG00000032441	Pan2	100	74.442	ENSAMXG00000005418	pan2	99	74.690	Astyanax_mexicanus
ENSRNOG00000032441	Pan2	100	95.409	ENSBTAG00000004376	PAN2	100	95.409	Bos_taurus
ENSRNOG00000032441	Pan2	100	95.507	ENSCJAG00000011141	PAN2	100	95.507	Callithrix_jacchus
ENSRNOG00000032441	Pan2	100	95.743	ENSCAFG00000000119	PAN2	100	95.743	Canis_familiaris
ENSRNOG00000032441	Pan2	100	94.715	ENSCAFG00020024865	PAN2	100	94.715	Canis_lupus_dingo
ENSRNOG00000032441	Pan2	100	94.610	ENSCHIG00000026935	PAN2	100	94.610	Capra_hircus
ENSRNOG00000032441	Pan2	100	95.274	ENSTSYG00000006927	PAN2	100	98.077	Carlito_syrichta
ENSRNOG00000032441	Pan2	100	95.017	ENSCPOG00000014918	PAN2	100	95.017	Cavia_porcellus
ENSRNOG00000032441	Pan2	100	95.591	ENSCCAG00000036637	PAN2	100	96.154	Cebus_capucinus
ENSRNOG00000032441	Pan2	100	95.910	ENSCATG00000045076	PAN2	100	96.154	Cercocebus_atys
ENSRNOG00000032441	Pan2	100	95.017	ENSCLAG00000011700	PAN2	100	95.017	Chinchilla_lanigera
ENSRNOG00000032441	Pan2	100	95.341	ENSCSAG00000005173	PAN2	100	95.341	Chlorocebus_sabaeus
ENSRNOG00000032441	Pan2	100	85.225	ENSCPBG00000014029	PAN2	100	85.225	Chrysemys_picta_bellii
ENSRNOG00000032441	Pan2	91	45.702	ENSCSAVG00000003833	-	99	52.575	Ciona_savignyi
ENSRNOG00000032441	Pan2	100	93.184	ENSCANG00000017798	PAN2	100	93.184	Colobus_angolensis_palliatus
ENSRNOG00000032441	Pan2	100	96.992	ENSCGRG00001019707	Pan2	100	96.992	Cricetulus_griseus_chok1gshd
ENSRNOG00000032441	Pan2	100	96.017	ENSCGRG00000009996	Pan2	100	96.017	Cricetulus_griseus_crigri
ENSRNOG00000032441	Pan2	100	71.311	ENSCSEG00000021529	pan2	99	71.763	Cynoglossus_semilaevis
ENSRNOG00000032441	Pan2	100	75.436	ENSCVAG00000010197	pan2	100	75.436	Cyprinodon_variegatus
ENSRNOG00000032441	Pan2	100	73.845	ENSDARG00000074675	pan2	99	74.132	Danio_rerio
ENSRNOG00000032441	Pan2	100	95.234	ENSDNOG00000010940	PAN2	100	95.234	Dasypus_novemcinctus
ENSRNOG00000032441	Pan2	93	41.853	FBgn0033352	PAN2	96	41.853	Drosophila_melanogaster
ENSRNOG00000032441	Pan2	75	96.919	ENSETEG00000012041	PAN2	82	96.919	Echinops_telfairi
ENSRNOG00000032441	Pan2	98	59.966	ENSEBUG00000002773	pan2	98	60.222	Eptatretus_burgeri
ENSRNOG00000032441	Pan2	100	95.041	ENSEASG00005005235	PAN2	100	95.041	Equus_asinus_asinus
ENSRNOG00000032441	Pan2	100	95.993	ENSECAG00000019814	PAN2	100	95.993	Equus_caballus
ENSRNOG00000032441	Pan2	99	74.422	ENSELUG00000024604	pan2	99	74.711	Esox_lucius
ENSRNOG00000032441	Pan2	100	95.840	ENSFCAG00000012021	PAN2	100	95.840	Felis_catus
ENSRNOG00000032441	Pan2	99	84.751	ENSFALG00000000464	PAN2	99	84.422	Ficedula_albicollis
ENSRNOG00000032441	Pan2	100	94.942	ENSFDAG00000017104	PAN2	100	94.942	Fukomys_damarensis
ENSRNOG00000032441	Pan2	90	76.253	ENSFHEG00000000157	pan2	96	76.253	Fundulus_heteroclitus
ENSRNOG00000032441	Pan2	100	73.432	ENSGMOG00000007249	pan2	99	73.845	Gadus_morhua
ENSRNOG00000032441	Pan2	100	84.737	ENSGALG00000031512	PAN2	100	84.737	Gallus_gallus
ENSRNOG00000032441	Pan2	100	76.100	ENSGAFG00000000284	pan2	100	76.266	Gambusia_affinis
ENSRNOG00000032441	Pan2	100	74.361	ENSGACG00000010722	pan2	99	74.856	Gasterosteus_aculeatus
ENSRNOG00000032441	Pan2	100	84.975	ENSGAGG00000007868	PAN2	100	84.975	Gopherus_agassizii
ENSRNOG00000032441	Pan2	100	95.670	ENSGGOG00000009115	PAN2	100	96.154	Gorilla_gorilla
ENSRNOG00000032441	Pan2	100	75.557	ENSHBUG00000005234	pan2	99	75.685	Haplochromis_burtoni
ENSRNOG00000032441	Pan2	99	94.983	ENSHGLG00000005647	PAN2	99	94.983	Heterocephalus_glaber_female
ENSRNOG00000032441	Pan2	99	94.732	ENSHGLG00100014057	PAN2	99	94.732	Heterocephalus_glaber_male
ENSRNOG00000032441	Pan2	100	74.403	ENSHCOG00000007920	pan2	99	74.650	Hippocampus_comes
ENSRNOG00000032441	Pan2	100	74.669	ENSIPUG00000011065	PAN2	99	74.669	Ictalurus_punctatus
ENSRNOG00000032441	Pan2	94	96.203	ENSSTOG00000015974	PAN2	100	96.203	Ictidomys_tridecemlineatus
ENSRNOG00000032441	Pan2	99	95.230	ENSJJAG00000013044	Pan2	98	95.155	Jaculus_jaculus
ENSRNOG00000032441	Pan2	100	75.165	ENSKMAG00000006192	pan2	99	75.515	Kryptolebias_marmoratus
ENSRNOG00000032441	Pan2	93	80.112	ENSLBEG00000015763	pan2	97	80.112	Labrus_bergylta
ENSRNOG00000032441	Pan2	100	72.010	ENSLACG00000018694	PAN2	100	72.091	Latimeria_chalumnae
ENSRNOG00000032441	Pan2	100	76.587	ENSLOCG00000004333	pan2	99	76.917	Lepisosteus_oculatus
ENSRNOG00000032441	Pan2	100	93.599	ENSLAFG00000014873	PAN2	100	93.599	Loxodonta_africana
ENSRNOG00000032441	Pan2	100	95.823	ENSMFAG00000002293	PAN2	100	96.154	Macaca_fascicularis
ENSRNOG00000032441	Pan2	100	95.823	ENSMMUG00000013482	PAN2	100	95.823	Macaca_mulatta
ENSRNOG00000032441	Pan2	100	95.910	ENSMNEG00000033264	PAN2	100	96.154	Macaca_nemestrina
ENSRNOG00000032441	Pan2	100	95.993	ENSMLEG00000037388	PAN2	100	96.154	Mandrillus_leucophaeus
ENSRNOG00000032441	Pan2	100	75.825	ENSMAMG00000001624	pan2	100	76.073	Mastacembelus_armatus
ENSRNOG00000032441	Pan2	98	61.139	ENSMZEG00005026472	pan2	98	61.139	Maylandia_zebra
ENSRNOG00000032441	Pan2	100	75.700	ENSMZEG00005026462	pan2	99	75.783	Maylandia_zebra
ENSRNOG00000032441	Pan2	97	84.801	ENSMGAG00000001439	PAN2	100	84.715	Meleagris_gallopavo
ENSRNOG00000032441	Pan2	99	96.482	ENSMAUG00000012602	Pan2	99	96.482	Mesocricetus_auratus
ENSRNOG00000032441	Pan2	100	95.826	ENSMICG00000017661	PAN2	100	98.077	Microcebus_murinus
ENSRNOG00000032441	Pan2	100	96.074	ENSMOCG00000007191	Pan2	100	96.074	Microtus_ochrogaster
ENSRNOG00000032441	Pan2	99	74.958	ENSMMOG00000009313	pan2	98	75.396	Mola_mola
ENSRNOG00000032441	Pan2	100	75.411	ENSMALG00000013377	pan2	100	75.658	Monopterus_albus
ENSRNOG00000032441	Pan2	100	97.671	MGP_CAROLIEiJ_G0015930	Pan2	100	97.671	Mus_caroli
ENSRNOG00000032441	Pan2	100	98.659	ENSMUSG00000005682	Pan2	100	98.659	Mus_musculus
ENSRNOG00000032441	Pan2	100	97.754	MGP_PahariEiJ_G0031154	Pan2	100	97.754	Mus_pahari
ENSRNOG00000032441	Pan2	100	98.575	MGP_SPRETEiJ_G0016755	Pan2	100	98.575	Mus_spretus
ENSRNOG00000032441	Pan2	100	96.077	ENSMPUG00000001383	PAN2	100	96.077	Mustela_putorius_furo
ENSRNOG00000032441	Pan2	100	94.491	ENSMLUG00000006737	PAN2	100	94.491	Myotis_lucifugus
ENSRNOG00000032441	Pan2	100	96.253	ENSNGAG00000007930	Pan2	100	96.253	Nannospalax_galili
ENSRNOG00000032441	Pan2	92	86.818	ENSNBRG00000006585	pan2	99	86.818	Neolamprologus_brichardi
ENSRNOG00000032441	Pan2	100	90.207	ENSNLEG00000017499	PAN2	100	96.154	Nomascus_leucogenys
ENSRNOG00000032441	Pan2	100	91.015	ENSMEUG00000010125	PAN2	100	91.015	Notamacropus_eugenii
ENSRNOG00000032441	Pan2	100	94.855	ENSOPRG00000001468	PAN2	100	94.855	Ochotona_princeps
ENSRNOG00000032441	Pan2	100	94.532	ENSODEG00000007203	PAN2	100	94.532	Octodon_degus
ENSRNOG00000032441	Pan2	100	74.877	ENSONIG00000016732	pan2	100	75.123	Oreochromis_niloticus
ENSRNOG00000032441	Pan2	81	73.821	ENSOANG00000005151	PAN2	99	73.922	Ornithorhynchus_anatinus
ENSRNOG00000032441	Pan2	100	95.436	ENSOCUG00000007227	PAN2	100	95.436	Oryctolagus_cuniculus
ENSRNOG00000032441	Pan2	100	74.650	ENSORLG00000015195	pan2	100	74.773	Oryzias_latipes
ENSRNOG00000032441	Pan2	100	74.815	ENSORLG00020000277	pan2	100	74.938	Oryzias_latipes_hni
ENSRNOG00000032441	Pan2	100	74.733	ENSORLG00015005193	pan2	100	74.856	Oryzias_latipes_hsok
ENSRNOG00000032441	Pan2	100	75.268	ENSOMEG00000022087	pan2	98	79.275	Oryzias_melastigma
ENSRNOG00000032441	Pan2	100	94.780	ENSOGAG00000030620	PAN2	100	94.780	Otolemur_garnettii
ENSRNOG00000032441	Pan2	100	95.008	ENSOARG00000009379	PAN2	100	95.008	Ovis_aries
ENSRNOG00000032441	Pan2	100	95.993	ENSPPAG00000001208	PAN2	100	96.154	Pan_paniscus
ENSRNOG00000032441	Pan2	100	95.923	ENSPPRG00000021586	PAN2	100	95.923	Panthera_pardus
ENSRNOG00000032441	Pan2	100	92.060	ENSPTIG00000012494	PAN2	100	92.060	Panthera_tigris_altaica
ENSRNOG00000032441	Pan2	100	95.993	ENSPTRG00000052054	PAN2	100	96.154	Pan_troglodytes
ENSRNOG00000032441	Pan2	92	95.668	ENSPANG00000018906	PAN2	100	96.154	Papio_anubis
ENSRNOG00000032441	Pan2	100	75.598	ENSPKIG00000003973	pan2	99	75.598	Paramormyrops_kingsleyae
ENSRNOG00000032441	Pan2	100	81.349	ENSPSIG00000003267	PAN2	100	81.432	Pelodiscus_sinensis
ENSRNOG00000032441	Pan2	100	74.917	ENSPMGG00000023186	pan2	100	75.000	Periophthalmus_magnuspinnatus
ENSRNOG00000032441	Pan2	100	95.519	ENSPEMG00000018505	Pan2	100	95.519	Peromyscus_maniculatus_bairdii
ENSRNOG00000032441	Pan2	91	68.956	ENSPMAG00000004731	pan2	100	68.956	Petromyzon_marinus
ENSRNOG00000032441	Pan2	100	91.660	ENSPCIG00000024643	PAN2	100	91.660	Phascolarctos_cinereus
ENSRNOG00000032441	Pan2	100	75.598	ENSPFOG00000008392	pan2	99	75.763	Poecilia_formosa
ENSRNOG00000032441	Pan2	100	75.515	ENSPLAG00000009198	pan2	99	75.680	Poecilia_latipinna
ENSRNOG00000032441	Pan2	100	75.810	ENSPMEG00000001484	pan2	100	75.977	Poecilia_mexicana
ENSRNOG00000032441	Pan2	100	75.768	ENSPREG00000000900	pan2	100	75.934	Poecilia_reticulata
ENSRNOG00000032441	Pan2	89	96.890	ENSPPYG00000004656	PAN2	100	96.890	Pongo_abelii
ENSRNOG00000032441	Pan2	92	94.932	ENSPCAG00000011047	PAN2	99	94.932	Procavia_capensis
ENSRNOG00000032441	Pan2	100	95.492	ENSPCOG00000018263	PAN2	100	95.743	Propithecus_coquereli
ENSRNOG00000032441	Pan2	94	96.667	ENSPVAG00000007591	PAN2	94	96.667	Pteropus_vampyrus
ENSRNOG00000032441	Pan2	99	75.813	ENSPNYG00000002629	pan2	99	75.833	Pundamilia_nyererei
ENSRNOG00000032441	Pan2	100	75.785	ENSPNAG00000027140	pan2	99	76.033	Pygocentrus_nattereri
ENSRNOG00000032441	Pan2	100	95.826	ENSRBIG00000029591	PAN2	100	95.826	Rhinopithecus_bieti
ENSRNOG00000032441	Pan2	100	95.743	ENSRROG00000041950	PAN2	100	95.743	Rhinopithecus_roxellana
ENSRNOG00000032441	Pan2	100	95.826	ENSSBOG00000027343	PAN2	100	96.154	Saimiri_boliviensis_boliviensis
ENSRNOG00000032441	Pan2	92	90.143	ENSSHAG00000000122	PAN2	100	91.038	Sarcophilus_harrisii
ENSRNOG00000032441	Pan2	99	76.222	ENSSFOG00015017740	pan2	99	76.553	Scleropages_formosus
ENSRNOG00000032441	Pan2	100	74.276	ENSSMAG00000020901	pan2	100	74.524	Scophthalmus_maximus
ENSRNOG00000032441	Pan2	100	75.329	ENSSDUG00000001840	pan2	99	75.802	Seriola_dumerili
ENSRNOG00000032441	Pan2	100	75.268	ENSSLDG00000013866	pan2	100	75.497	Seriola_lalandi_dorsalis
ENSRNOG00000032441	Pan2	92	93.820	ENSSARG00000013350	PAN2	92	93.820	Sorex_araneus
ENSRNOG00000032441	Pan2	92	85.236	ENSSPUG00000004270	PAN2	99	85.236	Sphenodon_punctatus
ENSRNOG00000032441	Pan2	100	75.411	ENSSPAG00000019970	pan2	100	75.535	Stegastes_partitus
ENSRNOG00000032441	Pan2	100	95.405	ENSSSCG00000000393	PAN2	100	95.405	Sus_scrofa
ENSRNOG00000032441	Pan2	100	75.041	ENSTRUG00000014260	pan2	99	75.288	Takifugu_rubripes
ENSRNOG00000032441	Pan2	100	75.062	ENSTNIG00000012537	pan2	99	75.535	Tetraodon_nigroviridis
ENSRNOG00000032441	Pan2	80	95.853	ENSTTRG00000007150	PAN2	80	95.853	Tursiops_truncatus
ENSRNOG00000032441	Pan2	100	95.594	ENSUAMG00000026522	PAN2	100	95.594	Ursus_americanus
ENSRNOG00000032441	Pan2	100	95.278	ENSUMAG00000017020	PAN2	100	95.278	Ursus_maritimus
ENSRNOG00000032441	Pan2	78	98.030	ENSVPAG00000007309	PAN2	85	98.030	Vicugna_pacos
ENSRNOG00000032441	Pan2	100	95.659	ENSVVUG00000021878	PAN2	100	95.659	Vulpes_vulpes
ENSRNOG00000032441	Pan2	99	77.972	ENSXETG00000009434	pan2	100	78.125	Xenopus_tropicalis
ENSRNOG00000032441	Pan2	100	71.867	ENSXCOG00000014391	pan2	100	72.033	Xiphophorus_couchianus
ENSRNOG00000032441	Pan2	100	75.602	ENSXMAG00000011661	pan2	100	75.768	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	-	ISO	Function
GO:0000175	3'-5'-exoribonuclease activity	-	ISS	Function
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	IEA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	-	IEA	Component
GO:0000932	P-body	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISS	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	-	IEA	Process
GO:0031251	PAN complex	21873635.	IBA	Component
GO:0031251	PAN complex	-	IEA	Component
GO:0031251	PAN complex	-	ISO	Component
GO:0031251	PAN complex	-	ISS	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process