EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000032735 (Gene tree)
Gene ID: 56763
Gene Symbol: Srek1
Alias: Sfrs12|Srrp86|Srsf12
Full Name: splicing regulatory glutamic acid and lysine rich protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 31693 bases
Position: chr2:33809807-33841499
Accession: 621696
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000049050	RRM_1	PF00076.22	8.8e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000040533	-	2105	XM_006231892	ENSRNOP00000049050	610 (aa)	XP_006231954	G3V9I9

Gene Model

Click here to download ENSRNOG00000032735's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000032735's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000032735	Srek1	75	95.322	ENSCSAG00000015908	-	90	93.275	Chlorocebus_sabaeus
ENSRNOG00000032735	Srek1	81	95.344	MGP_CAROLIEiJ_G0018855	Srek1	100	95.344	Mus_caroli
ENSRNOG00000032735	Srek1	97	95.286	ENSMUSG00000032621	Srek1	100	98.726	Mus_musculus
ENSRNOG00000032735	Srek1	81	95.142	MGP_SPRETEiJ_G0019734	Srek1	100	95.142	Mus_spretus
ENSRNOG00000032735	Srek1	54	80.723	ENSOGAG00000030859	-	99	79.217	Otolemur_garnettii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	14559993.	IPI	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component