EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000032776 (Gene tree)
Gene ID: 116650
Gene Symbol: Srp54a
Alias: Srp54
Full Name: signal recognition particle 54A
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 37441 bases
Position: chr6:75996643-76034083
Accession: 621390
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000048945	SRP54	PF00448.22	8.8e-78	1	1
ENSRNOP00000048945	SRP54_N	PF02881.19	1.7e-20	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000052076	-	2142	XM_006240097	ENSRNOP00000048945	504 (aa)	XP_006240159	Q6AYB5

Gene Model

Click here to download ENSRNOG00000032776's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000032776's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000032776	Srp54a	100	99.603	ENSG00000100883	SRP54	100	100.000	Homo_sapiens
ENSRNOG00000032776	Srp54a	100	95.833	ENSAPOG00000011314	srp54	100	95.833	Acanthochromis_polyacanthus
ENSRNOG00000032776	Srp54a	100	99.603	ENSAMEG00000015544	SRP54	100	99.603	Ailuropoda_melanoleuca
ENSRNOG00000032776	Srp54a	89	94.655	ENSACIG00000022831	srp54	97	94.655	Amphilophus_citrinellus
ENSRNOG00000032776	Srp54a	100	95.833	ENSAOCG00000019401	srp54	100	95.833	Amphiprion_ocellaris
ENSRNOG00000032776	Srp54a	100	95.833	ENSAPEG00000001977	srp54	100	95.833	Amphiprion_percula
ENSRNOG00000032776	Srp54a	100	96.230	ENSATEG00000013877	srp54	100	96.230	Anabas_testudineus
ENSRNOG00000032776	Srp54a	94	98.734	ENSAPLG00000010125	SRP54	95	98.734	Anas_platyrhynchos
ENSRNOG00000032776	Srp54a	100	98.214	ENSACAG00000002103	-	100	98.214	Anolis_carolinensis
ENSRNOG00000032776	Srp54a	65	81.873	ENSACAG00000001124	-	100	81.873	Anolis_carolinensis
ENSRNOG00000032776	Srp54a	86	95.161	ENSACAG00000010631	-	100	95.161	Anolis_carolinensis
ENSRNOG00000032776	Srp54a	100	99.603	ENSANAG00000022133	SRP54	100	99.603	Aotus_nancymaae
ENSRNOG00000032776	Srp54a	100	96.032	ENSACLG00000015866	srp54	100	96.032	Astatotilapia_calliptera
ENSRNOG00000032776	Srp54a	100	95.635	ENSAMXG00000032669	SRP54	100	95.635	Astyanax_mexicanus
ENSRNOG00000032776	Srp54a	100	99.603	ENSBTAG00000019085	SRP54	100	99.603	Bos_taurus
ENSRNOG00000032776	Srp54a	98	71.687	WBGene00009012	F21D5.7	100	71.687	Caenorhabditis_elegans
ENSRNOG00000032776	Srp54a	100	99.603	ENSCJAG00000006581	SRP54	100	99.603	Callithrix_jacchus
ENSRNOG00000032776	Srp54a	100	99.603	ENSCAFG00000013331	SRP54	100	99.603	Canis_familiaris
ENSRNOG00000032776	Srp54a	100	99.603	ENSCAFG00020023427	SRP54	100	99.603	Canis_lupus_dingo
ENSRNOG00000032776	Srp54a	100	99.603	ENSCHIG00000026345	SRP54	100	99.603	Capra_hircus
ENSRNOG00000032776	Srp54a	94	88.632	ENSTSYG00000035333	-	93	88.632	Carlito_syrichta
ENSRNOG00000032776	Srp54a	100	99.802	ENSTSYG00000002680	-	100	99.802	Carlito_syrichta
ENSRNOG00000032776	Srp54a	94	64.286	ENSCAPG00000008780	SRP54	100	64.286	Cavia_aperea
ENSRNOG00000032776	Srp54a	100	99.206	ENSCPOG00000003691	SRP54	100	99.206	Cavia_porcellus
ENSRNOG00000032776	Srp54a	90	99.286	ENSCCAG00000024179	SRP54	100	99.523	Cebus_capucinus
ENSRNOG00000032776	Srp54a	100	99.603	ENSCATG00000034083	SRP54	100	99.603	Cercocebus_atys
ENSRNOG00000032776	Srp54a	100	99.603	ENSCLAG00000015076	SRP54	100	99.603	Chinchilla_lanigera
ENSRNOG00000032776	Srp54a	100	99.603	ENSCSAG00000015575	SRP54	100	99.603	Chlorocebus_sabaeus
ENSRNOG00000032776	Srp54a	95	87.526	ENSCHOG00000008986	SRP54	100	87.526	Choloepus_hoffmanni
ENSRNOG00000032776	Srp54a	100	98.810	ENSCPBG00000026195	SRP54	100	98.810	Chrysemys_picta_bellii
ENSRNOG00000032776	Srp54a	100	81.548	ENSCING00000007380	-	100	81.548	Ciona_intestinalis
ENSRNOG00000032776	Srp54a	100	99.603	ENSCANG00000028532	SRP54	100	99.603	Colobus_angolensis_palliatus
ENSRNOG00000032776	Srp54a	100	99.603	ENSCGRG00001009525	-	100	99.603	Cricetulus_griseus_chok1gshd
ENSRNOG00000032776	Srp54a	76	99.481	ENSCGRG00000009453	-	89	99.481	Cricetulus_griseus_crigri
ENSRNOG00000032776	Srp54a	100	95.040	ENSCSEG00000012392	srp54	100	95.040	Cynoglossus_semilaevis
ENSRNOG00000032776	Srp54a	100	95.833	ENSCVAG00000010395	srp54	100	95.833	Cyprinodon_variegatus
ENSRNOG00000032776	Srp54a	100	96.032	ENSDARG00000098367	srp54	100	96.032	Danio_rerio
ENSRNOG00000032776	Srp54a	100	99.603	ENSDNOG00000032525	SRP54	100	99.603	Dasypus_novemcinctus
ENSRNOG00000032776	Srp54a	89	85.045	ENSDORG00000005159	-	97	85.045	Dipodomys_ordii
ENSRNOG00000032776	Srp54a	96	77.732	FBgn0010747	Srp54k	98	77.309	Drosophila_melanogaster
ENSRNOG00000032776	Srp54a	100	98.413	ENSETEG00000016307	-	100	98.413	Echinops_telfairi
ENSRNOG00000032776	Srp54a	83	58.134	ENSETEG00000012102	-	99	58.134	Echinops_telfairi
ENSRNOG00000032776	Srp54a	100	87.103	ENSEBUG00000009437	-	100	87.103	Eptatretus_burgeri
ENSRNOG00000032776	Srp54a	100	99.603	ENSEASG00005002057	SRP54	100	99.603	Equus_asinus_asinus
ENSRNOG00000032776	Srp54a	99	99.398	ENSECAG00000018042	SRP54	98	99.398	Equus_caballus
ENSRNOG00000032776	Srp54a	100	83.730	ENSEEUG00000001511	SRP54	100	83.730	Erinaceus_europaeus
ENSRNOG00000032776	Srp54a	100	95.238	ENSELUG00000003395	srp54	100	95.238	Esox_lucius
ENSRNOG00000032776	Srp54a	100	99.405	ENSFCAG00000032033	SRP54	100	99.405	Felis_catus
ENSRNOG00000032776	Srp54a	100	98.810	ENSFALG00000005995	SRP54	100	98.810	Ficedula_albicollis
ENSRNOG00000032776	Srp54a	100	99.603	ENSFDAG00000016767	SRP54	100	99.603	Fukomys_damarensis
ENSRNOG00000032776	Srp54a	100	95.437	ENSFHEG00000004263	srp54	100	95.437	Fundulus_heteroclitus
ENSRNOG00000032776	Srp54a	95	89.958	ENSGMOG00000011391	srp54	100	89.958	Gadus_morhua
ENSRNOG00000032776	Srp54a	100	98.810	ENSGALG00000023135	SRP54	100	98.810	Gallus_gallus
ENSRNOG00000032776	Srp54a	100	96.032	ENSGAFG00000011586	srp54	100	96.032	Gambusia_affinis
ENSRNOG00000032776	Srp54a	100	95.437	ENSGACG00000004181	srp54	100	95.437	Gasterosteus_aculeatus
ENSRNOG00000032776	Srp54a	100	98.810	ENSGAGG00000014766	SRP54	100	98.810	Gopherus_agassizii
ENSRNOG00000032776	Srp54a	100	99.603	ENSGGOG00000002926	SRP54	100	99.603	Gorilla_gorilla
ENSRNOG00000032776	Srp54a	100	96.032	ENSHBUG00000005678	srp54	100	96.032	Haplochromis_burtoni
ENSRNOG00000032776	Srp54a	100	99.603	ENSHGLG00000002850	SRP54	100	99.603	Heterocephalus_glaber_female
ENSRNOG00000032776	Srp54a	100	68.911	ENSHGLG00100007281	-	100	68.911	Heterocephalus_glaber_male
ENSRNOG00000032776	Srp54a	100	99.603	ENSHGLG00100005263	SRP54	100	99.603	Heterocephalus_glaber_male
ENSRNOG00000032776	Srp54a	100	94.048	ENSHCOG00000021127	srp54	100	94.048	Hippocampus_comes
ENSRNOG00000032776	Srp54a	100	95.238	ENSIPUG00000001420	srp54	100	95.238	Ictalurus_punctatus
ENSRNOG00000032776	Srp54a	100	99.603	ENSSTOG00000016023	SRP54	100	99.603	Ictidomys_tridecemlineatus
ENSRNOG00000032776	Srp54a	100	94.444	ENSJJAG00000013417	-	100	94.444	Jaculus_jaculus
ENSRNOG00000032776	Srp54a	87	76.364	ENSJJAG00000016404	-	100	76.364	Jaculus_jaculus
ENSRNOG00000032776	Srp54a	100	95.437	ENSKMAG00000007707	srp54	100	95.437	Kryptolebias_marmoratus
ENSRNOG00000032776	Srp54a	100	95.833	ENSLBEG00000018690	srp54	100	95.833	Labrus_bergylta
ENSRNOG00000032776	Srp54a	100	95.833	ENSLBEG00000021122	srp54	100	95.833	Labrus_bergylta
ENSRNOG00000032776	Srp54a	100	96.230	ENSLACG00000017890	SRP54	100	96.230	Latimeria_chalumnae
ENSRNOG00000032776	Srp54a	100	96.825	ENSLOCG00000009440	srp54	100	96.825	Lepisosteus_oculatus
ENSRNOG00000032776	Srp54a	100	99.603	ENSLAFG00000012007	SRP54	100	99.603	Loxodonta_africana
ENSRNOG00000032776	Srp54a	100	99.603	ENSMFAG00000044371	SRP54	100	99.603	Macaca_fascicularis
ENSRNOG00000032776	Srp54a	100	99.603	ENSMMUG00000015073	FAM177A1	100	99.603	Macaca_mulatta
ENSRNOG00000032776	Srp54a	100	99.603	ENSMNEG00000006947	SRP54	100	99.603	Macaca_nemestrina
ENSRNOG00000032776	Srp54a	100	99.603	ENSMLEG00000042251	SRP54	100	99.603	Mandrillus_leucophaeus
ENSRNOG00000032776	Srp54a	100	96.032	ENSMAMG00000004803	srp54	100	96.032	Mastacembelus_armatus
ENSRNOG00000032776	Srp54a	100	96.032	ENSMZEG00005027528	srp54	100	96.032	Maylandia_zebra
ENSRNOG00000032776	Srp54a	100	94.071	ENSMGAG00000012481	SRP54	100	94.071	Meleagris_gallopavo
ENSRNOG00000032776	Srp54a	100	99.802	ENSMAUG00000014447	-	100	99.802	Mesocricetus_auratus
ENSRNOG00000032776	Srp54a	100	99.603	ENSMICG00000010270	SRP54	100	99.603	Microcebus_murinus
ENSRNOG00000032776	Srp54a	87	99.773	ENSMOCG00000000948	-	100	99.773	Microtus_ochrogaster
ENSRNOG00000032776	Srp54a	89	94.183	ENSMMOG00000020303	srp54	98	94.183	Mola_mola
ENSRNOG00000032776	Srp54a	100	99.405	ENSMODG00000012925	-	100	99.405	Monodelphis_domestica
ENSRNOG00000032776	Srp54a	100	99.405	ENSMODG00000023150	-	100	99.405	Monodelphis_domestica
ENSRNOG00000032776	Srp54a	89	94.643	ENSMALG00000009163	srp54	99	94.643	Monopterus_albus
ENSRNOG00000032776	Srp54a	100	99.802	MGP_CAROLIEiJ_G0017754	-	100	99.802	Mus_caroli
ENSRNOG00000032776	Srp54a	100	99.802	ENSMUSG00000073079	Srp54a	100	100.000	Mus_musculus
ENSRNOG00000032776	Srp54a	100	99.802	ENSMUSG00000112449	Srp54b	100	99.802	Mus_musculus
ENSRNOG00000032776	Srp54a	100	99.008	ENSMUSG00000079108	Srp54c	100	99.008	Mus_musculus
ENSRNOG00000032776	Srp54a	100	99.802	MGP_PahariEiJ_G0029510	-	100	99.802	Mus_pahari
ENSRNOG00000032776	Srp54a	100	99.603	ENSMPUG00000016302	SRP54	100	99.603	Mustela_putorius_furo
ENSRNOG00000032776	Srp54a	100	99.008	ENSMLUG00000008958	SRP54	100	99.008	Myotis_lucifugus
ENSRNOG00000032776	Srp54a	100	89.683	ENSNGAG00000019806	-	100	89.683	Nannospalax_galili
ENSRNOG00000032776	Srp54a	87	95.682	ENSNBRG00000006000	srp54	100	95.682	Neolamprologus_brichardi
ENSRNOG00000032776	Srp54a	100	99.603	ENSNLEG00000003496	SRP54	100	99.603	Nomascus_leucogenys
ENSRNOG00000032776	Srp54a	67	100.000	ENSMEUG00000000138	-	76	100.000	Notamacropus_eugenii
ENSRNOG00000032776	Srp54a	58	100.000	ENSOPRG00000014502	-	60	100.000	Ochotona_princeps
ENSRNOG00000032776	Srp54a	100	99.603	ENSODEG00000004865	SRP54	100	99.603	Octodon_degus
ENSRNOG00000032776	Srp54a	100	96.032	ENSONIG00000011768	srp54	100	96.032	Oreochromis_niloticus
ENSRNOG00000032776	Srp54a	100	99.603	ENSOANG00000014051	SRP54	100	99.603	Ornithorhynchus_anatinus
ENSRNOG00000032776	Srp54a	100	99.008	ENSOCUG00000007838	SRP54	100	99.008	Oryctolagus_cuniculus
ENSRNOG00000032776	Srp54a	100	95.833	ENSORLG00000010027	srp54	100	95.833	Oryzias_latipes
ENSRNOG00000032776	Srp54a	100	95.833	ENSORLG00020001878	srp54	100	95.833	Oryzias_latipes_hni
ENSRNOG00000032776	Srp54a	100	95.833	ENSORLG00015021866	srp54	100	95.833	Oryzias_latipes_hsok
ENSRNOG00000032776	Srp54a	100	95.635	ENSOMEG00000020952	srp54	100	95.635	Oryzias_melastigma
ENSRNOG00000032776	Srp54a	100	99.603	ENSOGAG00000012188	SRP54	100	99.603	Otolemur_garnettii
ENSRNOG00000032776	Srp54a	100	99.603	ENSOARG00000007160	SRP54	100	99.603	Ovis_aries
ENSRNOG00000032776	Srp54a	100	99.603	ENSPPAG00000017434	SRP54	100	99.603	Pan_paniscus
ENSRNOG00000032776	Srp54a	100	98.413	ENSPPRG00000014047	SRP54	100	98.413	Panthera_pardus
ENSRNOG00000032776	Srp54a	100	99.405	ENSPTIG00000000744	SRP54	96	99.405	Panthera_tigris_altaica
ENSRNOG00000032776	Srp54a	100	99.603	ENSPTRG00000006259	FAM177A1	100	99.603	Pan_troglodytes
ENSRNOG00000032776	Srp54a	100	99.603	ENSPANG00000023853	SRP54	100	99.603	Papio_anubis
ENSRNOG00000032776	Srp54a	100	95.635	ENSPKIG00000001953	srp54	100	95.635	Paramormyrops_kingsleyae
ENSRNOG00000032776	Srp54a	100	98.611	ENSPSIG00000006476	SRP54	100	98.611	Pelodiscus_sinensis
ENSRNOG00000032776	Srp54a	91	93.043	ENSPMGG00000004127	srp54	99	93.043	Periophthalmus_magnuspinnatus
ENSRNOG00000032776	Srp54a	100	86.905	ENSPEMG00000019634	-	100	86.905	Peromyscus_maniculatus_bairdii
ENSRNOG00000032776	Srp54a	100	88.690	ENSPMAG00000006078	-	100	88.690	Petromyzon_marinus
ENSRNOG00000032776	Srp54a	100	99.405	ENSPCIG00000016175	SRP54	100	99.405	Phascolarctos_cinereus
ENSRNOG00000032776	Srp54a	100	96.032	ENSPFOG00000008870	srp54	100	96.032	Poecilia_formosa
ENSRNOG00000032776	Srp54a	100	96.032	ENSPLAG00000009889	srp54	100	96.032	Poecilia_latipinna
ENSRNOG00000032776	Srp54a	100	96.032	ENSPMEG00000008601	srp54	100	96.032	Poecilia_mexicana
ENSRNOG00000032776	Srp54a	100	96.032	ENSPREG00000004505	srp54	100	96.032	Poecilia_reticulata
ENSRNOG00000032776	Srp54a	100	94.444	ENSPPYG00000005739	SRP54	100	94.444	Pongo_abelii
ENSRNOG00000032776	Srp54a	100	95.437	ENSPCAG00000006268	SRP54	100	95.437	Procavia_capensis
ENSRNOG00000032776	Srp54a	100	97.624	ENSPCOG00000022473	SRP54	100	97.624	Propithecus_coquereli
ENSRNOG00000032776	Srp54a	63	100.000	ENSPVAG00000010056	SRP54	82	100.000	Pteropus_vampyrus
ENSRNOG00000032776	Srp54a	100	96.032	ENSPNYG00000009717	srp54	100	96.032	Pundamilia_nyererei
ENSRNOG00000032776	Srp54a	100	95.833	ENSPNAG00000008544	srp54	100	95.833	Pygocentrus_nattereri
ENSRNOG00000032776	Srp54a	100	99.603	ENSRROG00000041292	SRP54	100	99.603	Rhinopithecus_roxellana
ENSRNOG00000032776	Srp54a	86	53.061	YPR088C	SRP54	95	48.276	Saccharomyces_cerevisiae
ENSRNOG00000032776	Srp54a	94	99.578	ENSSBOG00000035145	SRP54	100	99.578	Saimiri_boliviensis_boliviensis
ENSRNOG00000032776	Srp54a	68	99.708	ENSSHAG00000000671	SRP54	100	99.708	Sarcophilus_harrisii
ENSRNOG00000032776	Srp54a	100	96.230	ENSSFOG00015013920	srp54	100	96.230	Scleropages_formosus
ENSRNOG00000032776	Srp54a	100	89.888	ENSSMAG00000002441	srp54	100	89.888	Scophthalmus_maximus
ENSRNOG00000032776	Srp54a	100	95.635	ENSSDUG00000018586	srp54	100	95.635	Seriola_dumerili
ENSRNOG00000032776	Srp54a	100	95.437	ENSSLDG00000010476	srp54	100	95.437	Seriola_lalandi_dorsalis
ENSRNOG00000032776	Srp54a	100	99.603	ENSSARG00000002744	SRP54	100	99.603	Sorex_araneus
ENSRNOG00000032776	Srp54a	100	98.810	ENSSPUG00000013101	SRP54	100	98.810	Sphenodon_punctatus
ENSRNOG00000032776	Srp54a	100	95.833	ENSSPAG00000002354	srp54	100	95.833	Stegastes_partitus
ENSRNOG00000032776	Srp54a	100	99.603	ENSSSCG00000001955	SRP54	100	99.603	Sus_scrofa
ENSRNOG00000032776	Srp54a	94	98.734	ENSTGUG00000011945	-	95	98.734	Taeniopygia_guttata
ENSRNOG00000032776	Srp54a	100	95.040	ENSTRUG00000007057	srp54	100	95.040	Takifugu_rubripes
ENSRNOG00000032776	Srp54a	100	94.643	ENSTNIG00000002589	srp54	100	94.643	Tetraodon_nigroviridis
ENSRNOG00000032776	Srp54a	89	91.051	ENSTBEG00000011409	SRP54	100	91.051	Tupaia_belangeri
ENSRNOG00000032776	Srp54a	100	89.683	ENSTTRG00000000928	SRP54	100	89.683	Tursiops_truncatus
ENSRNOG00000032776	Srp54a	52	99.237	ENSUAMG00000012385	SRP54	100	99.237	Ursus_americanus
ENSRNOG00000032776	Srp54a	100	99.603	ENSUMAG00000011234	SRP54	100	99.603	Ursus_maritimus
ENSRNOG00000032776	Srp54a	94	99.367	ENSVPAG00000005668	SRP54	100	99.367	Vicugna_pacos
ENSRNOG00000032776	Srp54a	100	99.603	ENSVVUG00000019962	SRP54	100	99.603	Vulpes_vulpes
ENSRNOG00000032776	Srp54a	100	82.249	ENSXETG00000012290	srp54	100	82.249	Xenopus_tropicalis
ENSRNOG00000032776	Srp54a	88	95.937	ENSXCOG00000004658	srp54	96	95.937	Xiphophorus_couchianus
ENSRNOG00000032776	Srp54a	100	96.032	ENSXMAG00000018315	srp54	100	96.032	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0003924	GTPase activity	-	ISO	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005525	GTP binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	-	IEA	Component
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	-	IEA	Process
GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	-	ISO	Process
GO:0006617	SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	-	ISO	Process
GO:0008144	drug binding	-	IEA	Function
GO:0008144	drug binding	-	ISO	Function
GO:0008150	biological_process	-	ND	Process
GO:0008312	7S RNA binding	-	IEA	Function
GO:0008312	7S RNA binding	-	ISO	Function
GO:0016607	nuclear speck	-	IEA	Component
GO:0019003	GDP binding	-	IEA	Function
GO:0019003	GDP binding	-	ISO	Function
GO:0030942	endoplasmic reticulum signal peptide binding	-	IEA	Function
GO:0030942	endoplasmic reticulum signal peptide binding	-	ISO	Function
GO:0042493	response to drug	-	IEA	Process
GO:0042493	response to drug	-	ISO	Process
GO:0043021	ribonucleoprotein complex binding	-	IEA	Function
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0045047	protein targeting to ER	-	ISO	Process