EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000033195 (Gene tree)
Gene ID: 170912
Gene Symbol: A1cf
Alias: A1cft|Acf|Apobec-1
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 88709 bases
Position: chr1:250426158-250514866
Accession: 619834
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000062802	DND1_DSRM	PF14709.7	5.9e-26	1	1
ENSRNOP00000062802	RRM_1	PF00076.22	4.7e-40	1	3
ENSRNOP00000062802	RRM_1	PF00076.22	4.7e-40	2	3
ENSRNOP00000062802	RRM_1	PF00076.22	4.7e-40	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000067643	-	4350	XM_006231272	ENSRNOP00000062802	586 (aa)	XP_006231334	F1LNL0

Gene Model

Click here to download ENSRNOG00000033195's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000033195's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000033195	A1cf	53	52.885	ENSRNOG00000011910	Hnrnpr	50	53.016
ENSRNOG00000033195	A1cf	52	53.074	ENSRNOG00000000204	Syncrip	56	52.698
ENSRNOG00000033195	A1cf	76	70.382	ENSRNOG00000025823	Rbm46	77	70.382
ENSRNOG00000033195	A1cf	75	57.082	ENSRNOG00000002408	Rbm47	77	57.082

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000033195	A1cf	100	93.526	ENSG00000148584	A1CF	100	98.010	Homo_sapiens
ENSRNOG00000033195	A1cf	100	73.613	ENSAPOG00000008259	a1cf	100	73.445	Acanthochromis_polyacanthus
ENSRNOG00000033195	A1cf	100	90.924	ENSAMEG00000000523	A1CF	100	91.261	Ailuropoda_melanoleuca
ENSRNOG00000033195	A1cf	100	75.702	ENSACIG00000008632	a1cf	100	77.025	Amphilophus_citrinellus
ENSRNOG00000033195	A1cf	100	74.295	ENSAOCG00000023744	a1cf	93	85.629	Amphiprion_ocellaris
ENSRNOG00000033195	A1cf	100	73.159	ENSAPEG00000009537	a1cf	100	73.813	Amphiprion_percula
ENSRNOG00000033195	A1cf	100	76.073	ENSATEG00000013720	a1cf	100	77.393	Anabas_testudineus
ENSRNOG00000033195	A1cf	100	85.570	ENSAPLG00000002964	A1CF	100	85.403	Anas_platyrhynchos
ENSRNOG00000033195	A1cf	100	83.333	ENSACAG00000015269	A1CF	100	83.673	Anolis_carolinensis
ENSRNOG00000033195	A1cf	100	93.867	ENSANAG00000019974	A1CF	100	93.526	Aotus_nancymaae
ENSRNOG00000033195	A1cf	100	74.172	ENSACLG00000017428	a1cf	100	75.662	Astatotilapia_calliptera
ENSRNOG00000033195	A1cf	100	71.405	ENSAMXG00000018180	a1cf	100	71.736	Astyanax_mexicanus
ENSRNOG00000033195	A1cf	100	92.845	ENSBTAG00000021195	A1CF	100	93.680	Bos_taurus
ENSRNOG00000033195	A1cf	100	92.941	ENSCJAG00000005045	A1CF	100	92.605	Callithrix_jacchus
ENSRNOG00000033195	A1cf	100	90.084	ENSCAFG00000015581	A1CF	100	91.092	Canis_familiaris
ENSRNOG00000033195	A1cf	100	90.084	ENSCAFG00020026421	A1CF	98	93.939	Canis_lupus_dingo
ENSRNOG00000033195	A1cf	100	90.924	ENSCHIG00000020411	A1CF	100	90.924	Capra_hircus
ENSRNOG00000033195	A1cf	94	92.419	ENSTSYG00000001755	A1CF	100	92.780	Carlito_syrichta
ENSRNOG00000033195	A1cf	100	82.972	ENSCAPG00000017386	A1CF	100	82.972	Cavia_aperea
ENSRNOG00000033195	A1cf	100	91.429	ENSCPOG00000009807	A1CF	100	91.261	Cavia_porcellus
ENSRNOG00000033195	A1cf	100	92.773	ENSCCAG00000018168	A1CF	100	92.437	Cebus_capucinus
ENSRNOG00000033195	A1cf	100	94.037	ENSCATG00000043715	A1CF	100	93.526	Cercocebus_atys
ENSRNOG00000033195	A1cf	100	91.946	ENSCLAG00000010424	A1CF	100	91.946	Chinchilla_lanigera
ENSRNOG00000033195	A1cf	100	92.437	ENSCSAG00000007032	A1CF	100	91.933	Chlorocebus_sabaeus
ENSRNOG00000033195	A1cf	98	87.973	ENSCHOG00000009089	A1CF	98	88.144	Choloepus_hoffmanni
ENSRNOG00000033195	A1cf	100	85.570	ENSCPBG00000026464	A1CF	100	85.403	Chrysemys_picta_bellii
ENSRNOG00000033195	A1cf	100	92.437	ENSCANG00000038032	A1CF	100	91.933	Colobus_angolensis_palliatus
ENSRNOG00000033195	A1cf	100	94.958	ENSCGRG00001017413	A1cf	100	94.958	Cricetulus_griseus_chok1gshd
ENSRNOG00000033195	A1cf	100	94.118	ENSCGRG00000017332	A1cf	100	94.118	Cricetulus_griseus_crigri
ENSRNOG00000033195	A1cf	100	74.129	ENSCSEG00000002361	a1cf	100	74.461	Cynoglossus_semilaevis
ENSRNOG00000033195	A1cf	100	75.083	ENSCVAG00000010520	a1cf	100	76.568	Cyprinodon_variegatus
ENSRNOG00000033195	A1cf	100	78.078	ENSDARG00000002968	a1cf	100	79.595	Danio_rerio
ENSRNOG00000033195	A1cf	100	90.756	ENSDNOG00000002829	A1CF	100	90.756	Dasypus_novemcinctus
ENSRNOG00000033195	A1cf	82	92.029	ENSETEG00000012527	A1CF	81	92.029	Echinops_telfairi
ENSRNOG00000033195	A1cf	100	92.127	ENSEASG00005012924	A1CF	100	92.462	Equus_asinus_asinus
ENSRNOG00000033195	A1cf	100	91.625	ENSECAG00000010424	A1CF	100	91.960	Equus_caballus
ENSRNOG00000033195	A1cf	78	79.739	ENSEEUG00000000013	A1CF	97	80.856	Erinaceus_europaeus
ENSRNOG00000033195	A1cf	100	77.704	ENSELUG00000003159	a1cf	100	77.537	Esox_lucius
ENSRNOG00000033195	A1cf	100	90.801	ENSFCAG00000011179	A1CF	100	91.141	Felis_catus
ENSRNOG00000033195	A1cf	100	85.544	ENSFALG00000013183	A1CF	100	85.374	Ficedula_albicollis
ENSRNOG00000033195	A1cf	100	92.675	ENSFDAG00000019371	A1CF	100	92.675	Fukomys_damarensis
ENSRNOG00000033195	A1cf	100	69.802	ENSFHEG00000019652	a1cf	96	82.812	Fundulus_heteroclitus
ENSRNOG00000033195	A1cf	100	70.462	ENSGMOG00000018943	a1cf	100	70.462	Gadus_morhua
ENSRNOG00000033195	A1cf	95	84.602	ENSGALG00000003765	A1CF	97	84.425	Gallus_gallus
ENSRNOG00000033195	A1cf	100	70.333	ENSGAFG00000014868	a1cf	100	71.333	Gambusia_affinis
ENSRNOG00000033195	A1cf	100	72.742	ENSGACG00000010241	a1cf	100	72.742	Gasterosteus_aculeatus
ENSRNOG00000033195	A1cf	94	85.080	ENSGAGG00000016508	A1CF	97	84.902	Gopherus_agassizii
ENSRNOG00000033195	A1cf	100	92.437	ENSGGOG00000009670	A1CF	100	92.437	Gorilla_gorilla
ENSRNOG00000033195	A1cf	100	75.041	ENSHBUG00000021959	a1cf	100	77.025	Haplochromis_burtoni
ENSRNOG00000033195	A1cf	100	92.101	ENSHGLG00000008955	A1CF	100	92.101	Heterocephalus_glaber_female
ENSRNOG00000033195	A1cf	100	91.429	ENSHGLG00100000518	A1CF	100	91.429	Heterocephalus_glaber_male
ENSRNOG00000033195	A1cf	100	68.943	ENSHCOG00000017669	a1cf	100	71.753	Hippocampus_comes
ENSRNOG00000033195	A1cf	89	80.597	ENSIPUG00000010367	a1cf	96	80.597	Ictalurus_punctatus
ENSRNOG00000033195	A1cf	100	74.959	ENSKMAG00000006568	a1cf	100	75.772	Kryptolebias_marmoratus
ENSRNOG00000033195	A1cf	99	73.399	ENSLBEG00000020994	a1cf	98	74.713	Labrus_bergylta
ENSRNOG00000033195	A1cf	100	81.387	ENSLACG00000008061	A1CF	100	81.049	Latimeria_chalumnae
ENSRNOG00000033195	A1cf	100	79.333	ENSLOCG00000006302	a1cf	100	79.333	Lepisosteus_oculatus
ENSRNOG00000033195	A1cf	100	91.092	ENSLAFG00000015462	A1CF	100	91.092	Loxodonta_africana
ENSRNOG00000033195	A1cf	100	94.037	ENSMFAG00000035948	A1CF	100	93.526	Macaca_fascicularis
ENSRNOG00000033195	A1cf	100	94.037	ENSMMUG00000007077	A1CF	100	93.526	Macaca_mulatta
ENSRNOG00000033195	A1cf	100	93.867	ENSMNEG00000031454	A1CF	100	93.356	Macaca_nemestrina
ENSRNOG00000033195	A1cf	100	92.773	ENSMLEG00000037223	A1CF	100	92.269	Mandrillus_leucophaeus
ENSRNOG00000033195	A1cf	100	73.632	ENSMAMG00000010402	a1cf	100	75.828	Mastacembelus_armatus
ENSRNOG00000033195	A1cf	100	74.875	ENSMZEG00005013245	a1cf	100	75.874	Maylandia_zebra
ENSRNOG00000033195	A1cf	100	84.925	ENSMGAG00000001507	A1CF	100	84.757	Meleagris_gallopavo
ENSRNOG00000033195	A1cf	100	94.454	ENSMAUG00000007422	A1cf	100	94.454	Mesocricetus_auratus
ENSRNOG00000033195	A1cf	100	92.034	ENSMICG00000003377	A1CF	100	92.373	Microcebus_murinus
ENSRNOG00000033195	A1cf	100	94.454	ENSMOCG00000021536	A1cf	100	94.454	Microtus_ochrogaster
ENSRNOG00000033195	A1cf	100	68.325	ENSMMOG00000009422	a1cf	100	68.988	Mola_mola
ENSRNOG00000033195	A1cf	92	89.054	ENSMODG00000016478	A1CF	97	90.787	Monodelphis_domestica
ENSRNOG00000033195	A1cf	100	73.142	ENSMALG00000012992	a1cf	100	73.142	Monopterus_albus
ENSRNOG00000033195	A1cf	100	98.126	MGP_CAROLIEiJ_G0022873	A1cf	100	98.126	Mus_caroli
ENSRNOG00000033195	A1cf	100	98.126	ENSMUSG00000052595	A1cf	100	98.126	Mus_musculus
ENSRNOG00000033195	A1cf	100	97.104	MGP_PahariEiJ_G0014366	A1cf	100	97.104	Mus_pahari
ENSRNOG00000033195	A1cf	100	97.615	MGP_SPRETEiJ_G0023792	A1cf	100	97.615	Mus_spretus
ENSRNOG00000033195	A1cf	100	85.042	ENSMPUG00000016971	A1CF	100	85.042	Mustela_putorius_furo
ENSRNOG00000033195	A1cf	100	90.756	ENSMLUG00000016071	A1CF	100	90.756	Myotis_lucifugus
ENSRNOG00000033195	A1cf	100	93.782	ENSNGAG00000015136	A1cf	100	93.782	Nannospalax_galili
ENSRNOG00000033195	A1cf	100	75.372	ENSNBRG00000001712	a1cf	100	77.355	Neolamprologus_brichardi
ENSRNOG00000033195	A1cf	100	93.109	ENSNLEG00000012028	A1CF	100	93.109	Nomascus_leucogenys
ENSRNOG00000033195	A1cf	94	87.027	ENSMEUG00000015909	A1CF	100	86.847	Notamacropus_eugenii
ENSRNOG00000033195	A1cf	88	80.952	ENSOPRG00000010667	A1CF	97	80.943	Ochotona_princeps
ENSRNOG00000033195	A1cf	100	75.702	ENSONIG00000019105	a1cf	100	76.860	Oreochromis_niloticus
ENSRNOG00000033195	A1cf	78	88.017	ENSOANG00000007360	A1CF	99	88.017	Ornithorhynchus_anatinus
ENSRNOG00000033195	A1cf	100	91.667	ENSOCUG00000011587	A1CF	100	92.347	Oryctolagus_cuniculus
ENSRNOG00000033195	A1cf	100	72.059	ENSORLG00000013342	a1cf	100	71.683	Oryzias_latipes
ENSRNOG00000033195	A1cf	100	72.757	ENSORLG00020000586	a1cf	100	72.801	Oryzias_latipes_hni
ENSRNOG00000033195	A1cf	100	72.594	ENSORLG00015018569	a1cf	100	72.638	Oryzias_latipes_hsok
ENSRNOG00000033195	A1cf	100	73.964	ENSOMEG00000013531	a1cf	100	73.964	Oryzias_melastigma
ENSRNOG00000033195	A1cf	100	90.084	ENSOGAG00000012884	A1CF	100	90.420	Otolemur_garnettii
ENSRNOG00000033195	A1cf	100	90.924	ENSOARG00000013695	A1CF	100	90.924	Ovis_aries
ENSRNOG00000033195	A1cf	97	90.295	ENSPPAG00000028115	A1CF	100	93.927	Pan_paniscus
ENSRNOG00000033195	A1cf	100	89.580	ENSPPRG00000012180	A1CF	100	89.916	Panthera_pardus
ENSRNOG00000033195	A1cf	100	89.580	ENSPTIG00000021223	A1CF	100	89.916	Panthera_tigris_altaica
ENSRNOG00000033195	A1cf	100	93.526	ENSPTRG00000002508	A1CF	100	93.526	Pan_troglodytes
ENSRNOG00000033195	A1cf	100	94.037	ENSPANG00000021988	A1CF	100	93.526	Papio_anubis
ENSRNOG00000033195	A1cf	100	78.203	ENSPKIG00000025176	a1cf	100	78.369	Paramormyrops_kingsleyae
ENSRNOG00000033195	A1cf	100	86.565	ENSPSIG00000010318	A1CF	100	86.054	Pelodiscus_sinensis
ENSRNOG00000033195	A1cf	88	72.727	ENSPMGG00000013359	a1cf	99	69.204	Periophthalmus_magnuspinnatus
ENSRNOG00000033195	A1cf	100	95.126	ENSPEMG00000015021	A1cf	100	95.126	Peromyscus_maniculatus_bairdii
ENSRNOG00000033195	A1cf	100	86.735	ENSPCIG00000002175	A1CF	100	86.565	Phascolarctos_cinereus
ENSRNOG00000033195	A1cf	100	74.267	ENSPFOG00000006683	a1cf	100	75.733	Poecilia_formosa
ENSRNOG00000033195	A1cf	100	74.430	ENSPFOG00000007437	-	100	75.896	Poecilia_formosa
ENSRNOG00000033195	A1cf	100	75.413	ENSPLAG00000001210	-	100	76.898	Poecilia_latipinna
ENSRNOG00000033195	A1cf	100	75.413	ENSPLAG00000000026	a1cf	100	76.898	Poecilia_latipinna
ENSRNOG00000033195	A1cf	100	67.881	ENSPMEG00000000921	a1cf	100	69.371	Poecilia_mexicana
ENSRNOG00000033195	A1cf	100	66.993	ENSPMEG00000015529	-	100	68.464	Poecilia_mexicana
ENSRNOG00000033195	A1cf	100	73.941	ENSPREG00000016298	a1cf	100	75.407	Poecilia_reticulata
ENSRNOG00000033195	A1cf	100	94.208	ENSPPYG00000002819	A1CF	100	94.208	Pongo_abelii
ENSRNOG00000033195	A1cf	79	72.258	ENSPCAG00000006463	A1CF	70	87.755	Procavia_capensis
ENSRNOG00000033195	A1cf	100	90.940	ENSPCOG00000024172	A1CF	100	91.443	Propithecus_coquereli
ENSRNOG00000033195	A1cf	100	74.225	ENSPNYG00000017944	a1cf	100	76.183	Pundamilia_nyererei
ENSRNOG00000033195	A1cf	100	79.530	ENSPNAG00000007704	a1cf	100	79.530	Pygocentrus_nattereri
ENSRNOG00000033195	A1cf	100	86.265	ENSRBIG00000042892	A1CF	100	91.650	Rhinopithecus_bieti
ENSRNOG00000033195	A1cf	100	92.773	ENSRROG00000041398	A1CF	100	92.269	Rhinopithecus_roxellana
ENSRNOG00000033195	A1cf	100	92.605	ENSSBOG00000021930	A1CF	100	93.241	Saimiri_boliviensis_boliviensis
ENSRNOG00000033195	A1cf	100	86.735	ENSSHAG00000005096	A1CF	100	86.565	Sarcophilus_harrisii
ENSRNOG00000033195	A1cf	100	78.824	ENSSFOG00015011774	a1cf	100	78.824	Scleropages_formosus
ENSRNOG00000033195	A1cf	100	73.290	ENSSMAG00000013271	a1cf	100	73.616	Scophthalmus_maximus
ENSRNOG00000033195	A1cf	100	74.959	ENSSDUG00000013930	a1cf	100	75.954	Seriola_dumerili
ENSRNOG00000033195	A1cf	100	70.067	ENSSLDG00000004290	a1cf	100	71.070	Seriola_lalandi_dorsalis
ENSRNOG00000033195	A1cf	95	82.796	ENSSARG00000005940	A1CF	96	82.796	Sorex_araneus
ENSRNOG00000033195	A1cf	95	84.183	ENSSPUG00000006797	A1CF	95	84.183	Sphenodon_punctatus
ENSRNOG00000033195	A1cf	100	91.597	ENSSSCG00000010431	A1CF	100	91.597	Sus_scrofa
ENSRNOG00000033195	A1cf	100	84.615	ENSTGUG00000005090	A1CF	100	84.448	Taeniopygia_guttata
ENSRNOG00000033195	A1cf	100	72.920	ENSTRUG00000001982	a1cf	100	72.920	Takifugu_rubripes
ENSRNOG00000033195	A1cf	100	73.333	ENSTNIG00000003580	a1cf	100	73.333	Tetraodon_nigroviridis
ENSRNOG00000033195	A1cf	97	85.237	ENSTTRG00000013190	A1CF	95	85.237	Tursiops_truncatus
ENSRNOG00000033195	A1cf	100	92.504	ENSUAMG00000020065	A1CF	100	92.675	Ursus_americanus
ENSRNOG00000033195	A1cf	100	90.924	ENSUMAG00000011162	A1CF	100	91.092	Ursus_maritimus
ENSRNOG00000033195	A1cf	87	88.499	ENSVPAG00000006130	A1CF	86	88.499	Vicugna_pacos
ENSRNOG00000033195	A1cf	100	92.334	ENSVVUG00000002504	A1CF	100	92.504	Vulpes_vulpes
ENSRNOG00000033195	A1cf	100	76.167	ENSXETG00000006611	a1cf	100	75.833	Xenopus_tropicalis
ENSRNOG00000033195	A1cf	100	76.578	ENSXCOG00000003302	a1cf	100	77.575	Xiphophorus_couchianus
ENSRNOG00000033195	A1cf	100	75.574	ENSXMAG00000016703	a1cf	100	76.557	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0003725	double-stranded RNA binding	-	ISS	Function
GO:0003727	single-stranded RNA binding	-	IEA	Function
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0003727	single-stranded RNA binding	-	ISS	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	11870221.	IDA	Function
GO:0005515	protein binding	10781591.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005720	nuclear heterochromatin	11870221.	IDA	Component
GO:0005737	cytoplasm	11870221.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007566	embryo implantation	-	IEA	Process
GO:0007566	embryo implantation	-	ISO	Process
GO:0010609	mRNA localization resulting in posttranscriptional regulation of gene expression	21873635.	IBA	Process
GO:0010609	mRNA localization resulting in posttranscriptional regulation of gene expression	-	IEA	Process
GO:0010609	mRNA localization resulting in posttranscriptional regulation of gene expression	-	ISO	Process
GO:0016554	cytidine to uridine editing	21873635.	IBA	Process
GO:0016554	cytidine to uridine editing	-	IEA	Process
GO:0016554	cytidine to uridine editing	10669759.	IMP	Process
GO:0016554	cytidine to uridine editing	-	ISO	Process
GO:0016554	cytidine to uridine editing	12896982.	TAS	Process
GO:0016556	mRNA modification	21873635.	IBA	Process
GO:0016556	mRNA modification	-	IEA	Process
GO:0016556	mRNA modification	-	ISO	Process
GO:0030895	apolipoprotein B mRNA editing enzyme complex	21873635.	IBA	Component
GO:0030895	apolipoprotein B mRNA editing enzyme complex	-	IEA	Component
GO:0030895	apolipoprotein B mRNA editing enzyme complex	-	ISO	Component
GO:0030895	apolipoprotein B mRNA editing enzyme complex	-	ISS	Component
GO:0045293	mRNA editing complex	16820530.	IDA	Component
GO:0050714	positive regulation of protein secretion	20541607.	IMP	Process
GO:0050821	protein stabilization	-	ISO	Process
GO:0050821	protein stabilization	-	ISS	Process