EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000033556 (Gene tree)
Gene ID: 690911
Gene Symbol: Spen
Alias: LOC298604|LOC690911|RGD1564662
Full Name: spen family transcriptional repressor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 55512 bases
Position: chr5:160015454-160070965
Accession: 1589867
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000059120	RRM_5	PF13893.6	4.1e-06	1	2
ENSRNOP00000059120	RRM_5	PF13893.6	4.1e-06	2	2
ENSRNOP00000059120	RRM_1	PF00076.22	4.6e-33	1	3
ENSRNOP00000059120	RRM_1	PF00076.22	4.6e-33	2	3
ENSRNOP00000059120	RRM_1	PF00076.22	4.6e-33	3	3
ENSRNOP00000052647	RRM_1	PF00076.22	6.7e-29	1	3
ENSRNOP00000052647	RRM_1	PF00076.22	6.7e-29	2	3
ENSRNOP00000052647	RRM_1	PF00076.22	6.7e-29	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000055791	-	12019	-	ENSRNOP00000052647	3563 (aa)	-	F1M816
ENSRNOT00000067517	-	11791	-	ENSRNOP00000059120	3584 (aa)	-	F1M455

Gene Model

Click here to download ENSRNOG00000033556's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000033556's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000033556	Spen	100	80.433	ENSG00000065526	SPEN	99	97.643	Homo_sapiens
ENSRNOG00000033556	Spen	97	78.146	ENSAPOG00000009853	-	81	72.083	Acanthochromis_polyacanthus
ENSRNOG00000033556	Spen	78	81.006	ENSAPOG00000011411	si:ch1073-335m2.2	87	81.921	Acanthochromis_polyacanthus
ENSRNOG00000033556	Spen	100	79.274	ENSAMEG00000011817	SPEN	99	79.383	Ailuropoda_melanoleuca
ENSRNOG00000033556	Spen	73	74.825	ENSAOCG00000008077	si:ch1073-335m2.2	61	75.887	Amphiprion_ocellaris
ENSRNOG00000033556	Spen	72	75.887	ENSAPEG00000013515	si:ch1073-335m2.2	61	81.921	Amphiprion_percula
ENSRNOG00000033556	Spen	97	78.146	ENSAPEG00000010288	-	68	55.595	Amphiprion_percula
ENSRNOG00000033556	Spen	72	81.921	ENSATEG00000007674	si:ch1073-335m2.2	65	81.921	Anabas_testudineus
ENSRNOG00000033556	Spen	97	79.470	ENSATEG00000005627	-	68	56.371	Anabas_testudineus
ENSRNOG00000033556	Spen	98	60.352	ENSACAG00000013761	SPEN	91	61.664	Anolis_carolinensis
ENSRNOG00000033556	Spen	100	80.263	ENSANAG00000034428	SPEN	99	79.995	Aotus_nancymaae
ENSRNOG00000033556	Spen	52	77.551	ENSACLG00000021433	si:ch1073-335m2.2	86	77.551	Astatotilapia_calliptera
ENSRNOG00000033556	Spen	97	78.146	ENSACLG00000016922	-	88	66.803	Astatotilapia_calliptera
ENSRNOG00000033556	Spen	86	79.605	ENSAMXG00000012485	spen	88	48.683	Astyanax_mexicanus
ENSRNOG00000033556	Spen	100	78.966	ENSBTAG00000018729	SPEN	99	79.175	Bos_taurus
ENSRNOG00000033556	Spen	100	79.853	ENSCJAG00000008527	SPEN	99	79.695	Callithrix_jacchus
ENSRNOG00000033556	Spen	87	77.294	ENSCAFG00000016132	-	97	77.342	Canis_familiaris
ENSRNOG00000033556	Spen	100	79.757	ENSCHIG00000025070	SPEN	99	79.608	Capra_hircus
ENSRNOG00000033556	Spen	93	78.221	ENSTSYG00000036016	SPEN	99	78.658	Carlito_syrichta
ENSRNOG00000033556	Spen	99	75.837	ENSCAPG00000013803	SPEN	100	75.570	Cavia_aperea
ENSRNOG00000033556	Spen	99	75.990	ENSCPOG00000014036	SPEN	100	75.887	Cavia_porcellus
ENSRNOG00000033556	Spen	100	75.041	ENSCCAG00000020258	SPEN	99	77.364	Cebus_capucinus
ENSRNOG00000033556	Spen	95	99.074	ENSCATG00000015079	SPEN	99	98.165	Cercocebus_atys
ENSRNOG00000033556	Spen	100	76.656	ENSCLAG00000002018	SPEN	100	77.643	Chinchilla_lanigera
ENSRNOG00000033556	Spen	100	80.778	ENSCSAG00000000841	SPEN	99	80.723	Chlorocebus_sabaeus
ENSRNOG00000033556	Spen	100	79.545	ENSCANG00000034547	SPEN	99	79.545	Colobus_angolensis_palliatus
ENSRNOG00000033556	Spen	99	86.726	ENSCGRG00001007725	Spen	99	86.913	Cricetulus_griseus_chok1gshd
ENSRNOG00000033556	Spen	99	86.070	ENSCGRG00000010581	Spen	100	85.813	Cricetulus_griseus_crigri
ENSRNOG00000033556	Spen	97	81.457	ENSCSEG00000003915	-	90	46.478	Cynoglossus_semilaevis
ENSRNOG00000033556	Spen	82	82.123	ENSCVAG00000009075	si:ch1073-335m2.2	69	83.051	Cyprinodon_variegatus
ENSRNOG00000033556	Spen	97	43.732	ENSCVAG00000016346	-	89	46.588	Cyprinodon_variegatus
ENSRNOG00000033556	Spen	79	61.905	ENSDARG00000074332	si:ch1073-335m2.2	63	61.905	Danio_rerio
ENSRNOG00000033556	Spen	87	68.033	ENSDARG00000074245	spen	80	85.185	Danio_rerio
ENSRNOG00000033556	Spen	100	78.454	ENSDNOG00000041948	SPEN	99	78.618	Dasypus_novemcinctus
ENSRNOG00000033556	Spen	100	76.395	ENSDORG00000023909	Spen	99	76.989	Dipodomys_ordii
ENSRNOG00000033556	Spen	68	96.218	ENSETEG00000016692	-	65	96.234	Echinops_telfairi
ENSRNOG00000033556	Spen	95	99.074	ENSEASG00005015911	SPEN	99	99.074	Equus_asinus_asinus
ENSRNOG00000033556	Spen	95	99.074	ENSECAG00000008833	SPEN	99	99.074	Equus_caballus
ENSRNOG00000033556	Spen	72	95.349	ENSEEUG00000010255	SPEN	75	95.349	Erinaceus_europaeus
ENSRNOG00000033556	Spen	62	83.721	ENSELUG00000007726	si:ch1073-335m2.2	68	63.780	Esox_lucius
ENSRNOG00000033556	Spen	100	75.813	ENSFDAG00000010212	SPEN	100	76.714	Fukomys_damarensis
ENSRNOG00000033556	Spen	91	62.454	ENSGMOG00000008397	-	65	62.454	Gadus_morhua
ENSRNOG00000033556	Spen	80	75.500	ENSGMOG00000008156	si:ch1073-335m2.2	67	75.500	Gadus_morhua
ENSRNOG00000033556	Spen	73	81.356	ENSGAFG00000021570	si:ch1073-335m2.2	88	81.356	Gambusia_affinis
ENSRNOG00000033556	Spen	97	44.250	ENSGAFG00000015819	-	81	71.250	Gambusia_affinis
ENSRNOG00000033556	Spen	97	45.744	ENSGACG00000005341	-	69	57.152	Gasterosteus_aculeatus
ENSRNOG00000033556	Spen	80	69.524	ENSGACG00000001176	si:ch1073-335m2.2	66	81.176	Gasterosteus_aculeatus
ENSRNOG00000033556	Spen	97	95.937	ENSGAGG00000020785	SPEN	98	95.937	Gopherus_agassizii
ENSRNOG00000033556	Spen	100	80.285	ENSGGOG00000012041	SPEN	99	80.153	Gorilla_gorilla
ENSRNOG00000033556	Spen	64	82.022	ENSHBUG00000023253	si:ch1073-335m2.2	88	77.551	Haplochromis_burtoni
ENSRNOG00000033556	Spen	97	78.146	ENSHBUG00000020626	-	90	67.623	Haplochromis_burtoni
ENSRNOG00000033556	Spen	100	77.101	ENSHGLG00000019259	SPEN	98	82.394	Heterocephalus_glaber_female
ENSRNOG00000033556	Spen	89	78.979	ENSHGLG00100019294	SPEN	95	78.760	Heterocephalus_glaber_male
ENSRNOG00000033556	Spen	97	79.085	ENSIPUG00000021668	spen	87	78.205	Ictalurus_punctatus
ENSRNOG00000033556	Spen	80	67.593	ENSIPUG00000018212	si:ch1073-335m2.2	67	79.290	Ictalurus_punctatus
ENSRNOG00000033556	Spen	100	79.889	ENSSTOG00000021428	SPEN	100	80.984	Ictidomys_tridecemlineatus
ENSRNOG00000033556	Spen	100	79.747	ENSJJAG00000010882	Spen	99	80.434	Jaculus_jaculus
ENSRNOG00000033556	Spen	97	77.483	ENSKMAG00000003882	-	68	55.144	Kryptolebias_marmoratus
ENSRNOG00000033556	Spen	83	80.447	ENSKMAG00000021725	si:ch1073-335m2.2	83	81.356	Kryptolebias_marmoratus
ENSRNOG00000033556	Spen	84	40.814	ENSLBEG00000019129	-	88	40.321	Labrus_bergylta
ENSRNOG00000033556	Spen	87	81.065	ENSLBEG00000020855	si:ch1073-335m2.2	64	81.065	Labrus_bergylta
ENSRNOG00000033556	Spen	77	96.273	ENSLACG00000003258	SPEN	72	96.273	Latimeria_chalumnae
ENSRNOG00000033556	Spen	98	51.428	ENSLOCG00000007896	si:ch1073-335m2.2	99	51.845	Lepisosteus_oculatus
ENSRNOG00000033556	Spen	100	78.708	ENSLAFG00000004524	SPEN	99	78.708	Loxodonta_africana
ENSRNOG00000033556	Spen	100	80.383	ENSMFAG00000041974	SPEN	99	80.629	Macaca_fascicularis
ENSRNOG00000033556	Spen	100	80.465	ENSMMUG00000008026	SPEN	99	80.739	Macaca_mulatta
ENSRNOG00000033556	Spen	100	80.438	ENSMNEG00000042402	SPEN	99	80.711	Macaca_nemestrina
ENSRNOG00000033556	Spen	100	80.602	ENSMLEG00000039293	SPEN	99	80.793	Mandrillus_leucophaeus
ENSRNOG00000033556	Spen	78	83.832	ENSMAMG00000023870	si:ch1073-335m2.2	59	83.832	Mastacembelus_armatus
ENSRNOG00000033556	Spen	90	41.500	ENSMZEG00005021491	-	87	66.803	Maylandia_zebra
ENSRNOG00000033556	Spen	52	77.551	ENSMZEG00005011762	si:ch1073-335m2.2	86	77.551	Maylandia_zebra
ENSRNOG00000033556	Spen	100	84.290	ENSMAUG00000008318	Spen	99	84.263	Mesocricetus_auratus
ENSRNOG00000033556	Spen	100	79.940	ENSMICG00000030994	SPEN	99	80.137	Microcebus_murinus
ENSRNOG00000033556	Spen	100	87.223	ENSMOCG00000016083	Spen	99	87.251	Microtus_ochrogaster
ENSRNOG00000033556	Spen	53	80.447	ENSMMOG00000021742	si:ch1073-335m2.2	61	80.447	Mola_mola
ENSRNOG00000033556	Spen	97	78.808	ENSMALG00000008625	-	89	47.654	Monopterus_albus
ENSRNOG00000033556	Spen	100	90.570	MGP_CAROLIEiJ_G0026745	Spen	99	90.570	Mus_caroli
ENSRNOG00000033556	Spen	100	89.942	ENSMUSG00000040761	Spen	99	90.192	Mus_musculus
ENSRNOG00000033556	Spen	100	89.836	MGP_PahariEiJ_G0029076	Spen	99	89.864	Mus_pahari
ENSRNOG00000033556	Spen	100	90.114	MGP_SPRETEiJ_G0027724	Spen	99	90.419	Mus_spretus
ENSRNOG00000033556	Spen	100	78.996	ENSMPUG00000016317	SPEN	100	79.570	Mustela_putorius_furo
ENSRNOG00000033556	Spen	94	78.077	ENSMLUG00000010144	SPEN	98	95.802	Myotis_lucifugus
ENSRNOG00000033556	Spen	100	77.370	ENSNGAG00000000641	Spen	99	80.436	Nannospalax_galili
ENSRNOG00000033556	Spen	85	40.658	ENSNBRG00000022090	-	90	40.355	Neolamprologus_brichardi
ENSRNOG00000033556	Spen	69	77.551	ENSNBRG00000005733	si:ch1073-335m2.2	83	77.551	Neolamprologus_brichardi
ENSRNOG00000033556	Spen	100	80.465	ENSNLEG00000007652	SPEN	99	80.602	Nomascus_leucogenys
ENSRNOG00000033556	Spen	71	93.750	ENSMEUG00000002422	SPEN	73	93.750	Notamacropus_eugenii
ENSRNOG00000033556	Spen	94	84.375	ENSOPRG00000015800	SPEN	93	84.191	Ochotona_princeps
ENSRNOG00000033556	Spen	97	45.561	ENSONIG00000006573	-	95	80.306	Oreochromis_niloticus
ENSRNOG00000033556	Spen	100	77.473	ENSOCUG00000010840	SPEN	99	77.671	Oryctolagus_cuniculus
ENSRNOG00000033556	Spen	55	81.871	ENSORLG00000018414	si:ch1073-335m2.2	68	64.082	Oryzias_latipes
ENSRNOG00000033556	Spen	81	77.665	ENSORLG00000028894	-	59	77.665	Oryzias_latipes
ENSRNOG00000033556	Spen	55	81.871	ENSORLG00020009351	si:ch1073-335m2.2	66	64.082	Oryzias_latipes_hni
ENSRNOG00000033556	Spen	81	77.665	ENSORLG00020007735	-	65	77.665	Oryzias_latipes_hni
ENSRNOG00000033556	Spen	90	77.665	ENSORLG00015022085	-	56	77.665	Oryzias_latipes_hsok
ENSRNOG00000033556	Spen	53	81.988	ENSORLG00015005537	si:ch1073-335m2.2	66	63.673	Oryzias_latipes_hsok
ENSRNOG00000033556	Spen	95	76.119	ENSOMEG00000007639	-	67	76.119	Oryzias_melastigma
ENSRNOG00000033556	Spen	71	82.209	ENSOMEG00000004509	si:ch1073-335m2.2	61	81.707	Oryzias_melastigma
ENSRNOG00000033556	Spen	100	80.049	ENSOGAG00000025110	SPEN	99	79.923	Otolemur_garnettii
ENSRNOG00000033556	Spen	100	79.392	ENSOARG00000008477	SPEN	99	79.271	Ovis_aries
ENSRNOG00000033556	Spen	100	80.433	ENSPPAG00000035690	SPEN	100	80.268	Pan_paniscus
ENSRNOG00000033556	Spen	100	80.406	ENSPTRG00000000210	SPEN	99	80.246	Pan_troglodytes
ENSRNOG00000033556	Spen	100	79.398	ENSPANG00000006293	SPEN	99	79.535	Papio_anubis
ENSRNOG00000033556	Spen	86	83.684	ENSPKIG00000002617	SPEN	87	83.684	Paramormyrops_kingsleyae
ENSRNOG00000033556	Spen	97	48.329	ENSPKIG00000010492	si:ch1073-335m2.2	88	81.818	Paramormyrops_kingsleyae
ENSRNOG00000033556	Spen	100	87.124	ENSPEMG00000022997	Spen	100	87.566	Peromyscus_maniculatus_bairdii
ENSRNOG00000033556	Spen	90	76.119	ENSPFOG00000017986	si:ch1073-335m2.2	55	76.119	Poecilia_formosa
ENSRNOG00000033556	Spen	81	76.119	ENSPLAG00000016625	si:ch1073-335m2.2	63	76.119	Poecilia_latipinna
ENSRNOG00000033556	Spen	97	43.980	ENSPMEG00000006764	-	81	71.250	Poecilia_mexicana
ENSRNOG00000033556	Spen	85	76.119	ENSPMEG00000002674	si:ch1073-335m2.2	87	76.119	Poecilia_mexicana
ENSRNOG00000033556	Spen	74	82.486	ENSPREG00000005357	si:ch1073-335m2.2	62	82.486	Poecilia_reticulata
ENSRNOG00000033556	Spen	97	43.801	ENSPREG00000010399	-	81	71.250	Poecilia_reticulata
ENSRNOG00000033556	Spen	100	80.757	ENSPPYG00000001834	SPEN	99	80.597	Pongo_abelii
ENSRNOG00000033556	Spen	90	88.968	ENSPCAG00000009543	SPEN	92	85.627	Procavia_capensis
ENSRNOG00000033556	Spen	100	79.223	ENSPCOG00000021735	SPEN	99	78.972	Propithecus_coquereli
ENSRNOG00000033556	Spen	83	87.892	ENSPVAG00000013794	SPEN	83	87.965	Pteropus_vampyrus
ENSRNOG00000033556	Spen	97	78.146	ENSPNYG00000012379	-	88	67.623	Pundamilia_nyererei
ENSRNOG00000033556	Spen	69	77.551	ENSPNYG00000009042	si:ch1073-335m2.2	86	77.551	Pundamilia_nyererei
ENSRNOG00000033556	Spen	79	63.454	ENSPNAG00000011452	si:ch1073-335m2.2	59	63.454	Pygocentrus_nattereri
ENSRNOG00000033556	Spen	97	80.667	ENSPNAG00000020795	spen	77	75.314	Pygocentrus_nattereri
ENSRNOG00000033556	Spen	100	80.263	ENSRBIG00000039654	SPEN	100	80.307	Rhinopithecus_bieti
ENSRNOG00000033556	Spen	100	80.646	ENSRROG00000035686	SPEN	100	80.426	Rhinopithecus_roxellana
ENSRNOG00000033556	Spen	98	84.709	ENSSBOG00000028770	SPEN	99	82.282	Saimiri_boliviensis_boliviensis
ENSRNOG00000033556	Spen	82	90.698	ENSSFOG00015010267	si:ch1073-335m2.2	69	66.538	Scleropages_formosus
ENSRNOG00000033556	Spen	97	78.808	ENSSMAG00000008996	-	89	47.453	Scophthalmus_maximus
ENSRNOG00000033556	Spen	84	75.500	ENSSDUG00000008416	si:ch1073-335m2.2	66	75.124	Seriola_dumerili
ENSRNOG00000033556	Spen	97	79.470	ENSSDUG00000003476	-	81	73.140	Seriola_dumerili
ENSRNOG00000033556	Spen	79	74.627	ENSSLDG00000023347	si:ch1073-335m2.2	63	74.627	Seriola_lalandi_dorsalis
ENSRNOG00000033556	Spen	97	79.470	ENSSLDG00000012950	-	81	73.140	Seriola_lalandi_dorsalis
ENSRNOG00000033556	Spen	88	95.370	ENSSPUG00000001866	-	100	95.370	Sphenodon_punctatus
ENSRNOG00000033556	Spen	97	78.146	ENSSPAG00000006014	-	81	72.083	Stegastes_partitus
ENSRNOG00000033556	Spen	79	81.564	ENSSPAG00000012454	si:ch1073-335m2.2	80	82.486	Stegastes_partitus
ENSRNOG00000033556	Spen	85	79.729	ENSSSCG00000034484	SPEN	99	79.652	Sus_scrofa
ENSRNOG00000033556	Spen	51	82.456	ENSTRUG00000021008	si:ch1073-335m2.2	69	82.456	Takifugu_rubripes
ENSRNOG00000033556	Spen	97	43.871	ENSTRUG00000024350	-	70	54.773	Takifugu_rubripes
ENSRNOG00000033556	Spen	93	76.020	ENSTNIG00000010907	-	68	75.304	Tetraodon_nigroviridis
ENSRNOG00000033556	Spen	77	92.991	ENSTBEG00000003628	SPEN	77	92.991	Tupaia_belangeri
ENSRNOG00000033556	Spen	79	93.953	ENSTTRG00000015704	SPEN	79	93.953	Tursiops_truncatus
ENSRNOG00000033556	Spen	100	79.580	ENSUAMG00000009600	SPEN	99	79.689	Ursus_americanus
ENSRNOG00000033556	Spen	100	78.831	ENSUMAG00000021641	SPEN	99	78.858	Ursus_maritimus
ENSRNOG00000033556	Spen	95	99.074	ENSVVUG00000028951	SPEN	99	99.074	Vulpes_vulpes
ENSRNOG00000033556	Spen	97	56.452	ENSXETG00000023114	SPEN	99	56.452	Xenopus_tropicalis
ENSRNOG00000033556	Spen	71	81.356	ENSXCOG00000004516	si:ch1073-335m2.2	85	81.356	Xiphophorus_couchianus
ENSRNOG00000033556	Spen	97	44.330	ENSXMAG00000021384	-	80	69.328	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001085	RNA polymerase II transcription factor binding	-	IEA	Function
GO:0001085	RNA polymerase II transcription factor binding	-	ISO	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0003714	transcription corepressor activity	-	IEA	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0017053	transcriptional repressor complex	-	IEA	Component
GO:0017053	transcriptional repressor complex	-	ISO	Component
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0050769	positive regulation of neurogenesis	-	IEA	Process
GO:0050769	positive regulation of neurogenesis	-	ISO	Process